TAfinder detailed results
Overview
| Job ID | 9mizKMmBqU | ||
| Sequence name | Escherichia coli strain DH5alpha chromosome, complete genome. | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | - (T176) | Predicted domain | PRK09831 |
| Locus tag | C1467_RS19545 | Length | 150 a.a. |
| Coordinates | 3752827..3753279 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS19495 | 3748598..3749056 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| C1467_RS19500 | 3749317..3750774 | + | 1458 | WP_001293016.1 | cytosol nonspecific dipeptidase | - |
| C1467_RS19505 | 3750831..3751445 | - | 615 | WP_000602112.1 | peptide chain release factor H | - |
| C1467_RS19510 | 3751442..3752581 | - | 1140 | WP_000528869.1 | RNA ligase RtcB family protein | - |
| C1467_RS19520 | 3752827..3753279 | - | 453 | WP_001059857.1 | GNAT family N-acetyltransferase | Toxin |
| C1467_RS19525 | 3753276..3754331 | - | 1056 | WP_001226182.1 | DNA polymerase IV | - |
| C1467_RS19530 | 3754402..3755325 | - | 924 | WP_001232561.1 | putative lateral flagellar export/assembly protein LafU | - |
| C1467_RS19535 | 3755328..3756191 | - | 864 | WP_001169518.1 | flagellar motor stator protein MotA | - |
| C1467_RS19540 | 3756204..3756920 | - | 717 | WP_000938729.1 | FliA/WhiG family RNA polymerase sigma factor | - |
| C1467_RS19545 | 3756940..3757407 | - | 468 | WP_000725257.1 | flagellar basal body-associated FliL family protein | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
PRK09831 (E-value: 1.1e-93, Score:309.1)
PRK10514 (E-value: 2.4e-12, Score:44.8)
PF00583 (GNAT) (E-value: 2.8e-06, Score:24.9)
PRK10562 (E-value: 0.00012, Score:20.2)
PF13508 (Acetyltransf_7) (E-value: 0.0019, Score:15.2)
PRK07922 (E-value: 0.0039, Score:15)
COG1246 (ArgA) (E-value: 0.0031, Score:14.4)
PF13527 (Acetyltransf_9) (E-value: 1.1, Score:6.2)
PF13527 (Acetyltransf_9) (E-value: 1.4, Score:5.8)
Sequences
Orphan Toxin
Download Length: Molecular weight: 17590.19 Da Isoelectric Point: 9.6557
>WP_001059857.1 Orphan_TA_89 Toxin
MNNIQIRDYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRV
AVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFE
RYGFQTVKQQRVECRGEWFINFYMRYKQQH*
MNNIQIRDYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRV
AVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFE
RYGFQTVKQQRVECRGEWFINFYMRYKQQH*
Download Length: 453 bp
>WP_001059857.1 Orphan_TA_89 Toxin
TTAATGTTGCTGTTTATAACGCATATAAAAATTAATAAACCACTCTCCCCGACATTCAAC
GCGTTGCTGCTTAACTGTCTGAAAACCATAACGTTCAAAAAAGGGTTTTGCGGTTATGCT
TGCGTCCACCGTAAGTTCGGATTCAGACTTAATCAAAGGTTTTAACAAGGCGCTGGCAAC
CCCGCGGCGGGTGTATTCAGGGTCAACAAATAACATATCGATATGACGTTCAATGCGGGA
AATAAAACCAACCGGTTGTGCATTAATGACTGCAACCCGCACTTGTGATTTCGCGAGTTT
CTCCTTCCAGCGAGATTCGTCAATCTGCGCCCAGGCGGCAATTTGTTGTGGTGAATAATG
CTGACTGGCAGTCATCGTAACCGCTCTAATGAAAATAGCGCATAGTTGCTGAAAATCGCC
AGGCTGATAGTCTCTTATTTGTATGTTATTCAT
TTAATGTTGCTGTTTATAACGCATATAAAAATTAATAAACCACTCTCCCCGACATTCAAC
GCGTTGCTGCTTAACTGTCTGAAAACCATAACGTTCAAAAAAGGGTTTTGCGGTTATGCT
TGCGTCCACCGTAAGTTCGGATTCAGACTTAATCAAAGGTTTTAACAAGGCGCTGGCAAC
CCCGCGGCGGGTGTATTCAGGGTCAACAAATAACATATCGATATGACGTTCAATGCGGGA
AATAAAACCAACCGGTTGTGCATTAATGACTGCAACCCGCACTTGTGATTTCGCGAGTTT
CTCCTTCCAGCGAGATTCGTCAATCTGCGCCCAGGCGGCAATTTGTTGTGGTGAATAATG
CTGACTGGCAGTCATCGTAACCGCTCTAATGAAAATAGCGCATAGTTGCTGAAAATCGCC
AGGCTGATAGTCTCTTATTTGTATGTTATTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T176 | Vibrio cholerae O1 biovar El Tor str. N16961 |
39.394 |
40 |
0.172 |
| T165 | Vibrio cholerae O1 biovar El Tor str. N16961 |
39.394 |
40 |
0.172 |