MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 171405 bp
Accession: NZ_OU659121 Location: 1..171405 Organism: Providencia alcalifaciens strain 2019-04-28369-1-2 isolate 2019-04-28369-1-2 Replicon: plasmid 2
Accession: NZ_OU659121 Location: 1..171405 Organism: Providencia alcalifaciens strain 2019-04-28369-1-2 isolate 2019-04-28369-1-2 Replicon: plasmid 2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LDO76_RS19300 | 529..657 | - | 129 | WP_224051107.1 | helix-turn-helix domain-containing protein | - |
LDO76_RS19305 | 634..858 | + | 225 | Protein_1 | zinc ribbon domain-containing protein | - |
LDO76_RS19310 (NVI2019_PLFLNFOB_03875) | 1875..2624 | + | 750 | WP_224051108.1 | hypothetical protein | VF |
LDO76_RS19315 | 2645..3456 | + | 812 | Protein_3 | Cytolethal distending toxin subunit B | VF |
LDO76_RS19320 (NVI2019_PLFLNFOB_03878) | 3471..4019 | + | 549 | WP_224051109.1 | hypothetical protein | VF |
LDO76_RS19325 | 5360..6308 | + | 949 | Protein_5 | ISNCY family transposase ISPlu22 | Transposase |
LDO76_RS19330 (NVI2019_PLFLNFOB_03882) | 6552..8198 | - | 1647 | WP_224051110.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
LDO76_RS19335 (NVI2019_PLFLNFOB_03883) | 9154..10101 | + | 948 | WP_224051111.1 | ISNCY family transposase ISPlu15 | VF |
LDO76_RS19340 | 11186..11386 | + | 201 | WP_154635416.1 | zinc ribbon domain-containing protein | - |
LDO76_RS19345 (NVI2019_PLFLNFOB_03884) | 11951..12676 | + | 726 | WP_051420265.1 | tyrosine-type recombinase/integrase | - |
LDO76_RS19350 (NVI2019_PLFLNFOB_03885) | 13512..14726 | + | 1215 | WP_224051126.1 | AAA family ATPase | - |
LDO76_RS19355 (NVI2019_PLFLNFOB_03886) | 14716..15714 | + | 999 | WP_282563851.1 | ParB family protein | - |
LDO76_RS19360 (NVI2019_PLFLNFOB_03887) | 15901..16839 | + | 939 | WP_051420266.1 | RepA family replication protein | - |
LDO76_RS19365 | 17662..18556 | - | 895 | Protein_13 | DDE-type integrase/transposase/recombinase | - |
LDO76_RS19370 | 18610..18833 | - | 224 | Protein_14 | transposase | - |
LDO76_RS19375 (NVI2019_PLFLNFOB_03890) | 19453..28431 | + | 8979 | WP_224051112.1 | TcdA/TcdB catalytic glycosyltransferase domain-containing protein | - |
LDO76_RS19380 | 28521..28808 | - | 288 | Protein_16 | IS3 family transposase ISBrsa1 | Transposase |
LDO76_RS19385 (NVI2019_PLFLNFOB_03892) | 28875..29983 | + | 1109 | WP_155250254.1 | IS3 family transposase ISYal1 | Transposase |
LDO76_RS19390 (NVI2019_PLFLNFOB_03893) | 30083..31237 | - | 1155 | WP_155250252.1 | hypothetical protein | VF |
LDO76_RS19395 (NVI2019_PLFLNFOB_03894) | 31321..33012 | - | 1692 | WP_224051113.1 | Secreted effector protein SptP | VF |
LDO76_RS19400 (NVI2019_PLFLNFOB_03895) | 33042..33413 | - | 372 | WP_036979473.1 | Chaperone protein sicP | VF |
LDO76_RS19405 | 34025..34150 | - | 126 | Protein_21 | IS200/IS605 family transposase | - |
LDO76_RS19410 | 34144..34725 | - | 582 | Protein_22 | transposase | - |
LDO76_RS19420 (NVI2019_PLFLNFOB_03898) | 35966..36911 | - | 946 | Protein_24 | IS3 family transposase IS911 | Transposase |
LDO76_RS19425 (NVI2019_PLFLNFOB_03899) | 37296..37943 | + | 648 | WP_224061291.1 | hypothetical protein | - |
LDO76_RS19430 | 38673..38884 | - | 212 | Protein_26 | IS3 family transposase | - |
LDO76_RS19435 (NVI2019_PLFLNFOB_03900) | 39479..40240 | + | 762 | WP_036979246.1 | Invasion protein InvF | VF |
LDO76_RS19440 (NVI2019_PLFLNFOB_03901) | 40230..41957 | + | 1728 | WP_036979259.1 | Type 3 secretion system secretin | VF |
LDO76_RS19445 (NVI2019_PLFLNFOB_03902) | 41947..43056 | + | 1110 | WP_036961031.1 | Protein MxiC | VF |
LDO76_RS19450 (NVI2019_PLFLNFOB_03903) | 43094..45184 | + | 2091 | WP_036979247.1 | Invasion protein InvA | VF |
LDO76_RS19455 (NVI2019_PLFLNFOB_03904) | 45202..45669 | + | 468 | WP_282563852.1 | Surface presentation of antigens protein SpaK | VF |
LDO76_RS19460 (NVI2019_PLFLNFOB_03905) | 45606..46892 | + | 1287 | WP_036979250.1 | putative ATP synthase SpaL | VF |
LDO76_RS19465 (NVI2019_PLFLNFOB_03906) | 46879..47334 | + | 456 | WP_036961022.1 | hypothetical protein | VF |
LDO76_RS19470 (NVI2019_PLFLNFOB_03907) | 47322..48218 | + | 897 | WP_224051116.1 | hypothetical protein | VF |
LDO76_RS19475 (NVI2019_PLFLNFOB_03908) | 48218..49123 | + | 906 | WP_036979254.1 | Surface presentation of antigens protein SpaO | VF |
LDO76_RS19480 (NVI2019_PLFLNFOB_03909) | 49126..49788 | + | 663 | Protein_36 | Surface presentation of antigens protein SpaP | VF |
LDO76_RS19490 (NVI2019_PLFLNFOB_03911) | 49827..50945 | + | 1119 | WP_282563853.1 | Surface presentation of antigens protein SpaR | VF |
LDO76_RS19495 (NVI2019_PLFLNFOB_03912) | 50872..51933 | + | 1062 | WP_282490723.1 | Surface presentation of antigens protein SpaS | VF |
LDO76_RS19500 (NVI2019_PLFLNFOB_03913) | 52073..52573 | + | 501 | WP_036979256.1 | Chaperone protein SicA | VF |
LDO76_RS19505 (NVI2019_PLFLNFOB_03914) | 52576..54354 | + | 1779 | WP_051420268.1 | Cell invasion protein SipB | VF |
LDO76_RS19510 (NVI2019_PLFLNFOB_03915) | 54379..55605 | + | 1227 | WP_036979257.1 | Cell invasion protein SipC | VF |
LDO76_RS19515 (NVI2019_PLFLNFOB_03916) | 55700..56767 | + | 1068 | WP_051420269.1 | Cell invasion protein SipD | VF |
LDO76_RS19520 (NVI2019_PLFLNFOB_03917) | 56788..64020 | + | 7233 | WP_224061292.1 | hypothetical protein | VF |
LDO76_RS19525 (NVI2019_PLFLNFOB_03918) | 64120..64362 | + | 243 | WP_036978984.1 | hypothetical protein | - |
LDO76_RS19530 (NVI2019_PLFLNFOB_03919) | 64413..64922 | - | 510 | WP_051420270.1 | hypothetical protein | VF |
LDO76_RS19535 (NVI2019_PLFLNFOB_03920) | 65342..67021 | + | 1680 | WP_051420271.1 | Transcriptional regulator HilA | VF |
LDO76_RS19540 (NVI2019_PLFLNFOB_03921) | 67032..67556 | + | 525 | WP_282563854.1 | hypothetical protein | VF |
LDO76_RS19545 (NVI2019_PLFLNFOB_03922) | 67568..68212 | + | 645 | WP_224051118.1 | hypothetical protein | - |
LDO76_RS19550 (NVI2019_PLFLNFOB_03923) | 68549..69790 | + | 1242 | WP_282563855.1 | Protein PrgH | VF |
LDO76_RS19555 (NVI2019_PLFLNFOB_03924) | 69811..70059 | + | 249 | WP_036978978.1 | Protein PrgI | VF |
LDO76_RS19560 (NVI2019_PLFLNFOB_03925) | 70086..70424 | + | 339 | WP_282563856.1 | hypothetical protein | VF |
LDO76_RS19565 (NVI2019_PLFLNFOB_03926) | 70394..71143 | + | 750 | WP_036978976.1 | Lipoprotein PrgK | VF |
LDO76_RS19570 (NVI2019_PLFLNFOB_03927) | 71136..71738 | + | 603 | WP_224051119.1 | Oxygen-regulated invasion protein OrgA | VF |
LDO76_RS19575 (NVI2019_PLFLNFOB_03928) | 71695..72456 | + | 762 | WP_282563857.1 | Oxygen-regulated invasion protein OrgB | VF |
LDO76_RS19580 (NVI2019_PLFLNFOB_03929) | 72381..72818 | + | 438 | WP_051420274.1 | hypothetical protein | VF |
LDO76_RS19585 (NVI2019_PLFLNFOB_03930) | 73163..73570 | + | 408 | WP_282563858.1 | hypothetical protein | - |
LDO76_RS19590 (NVI2019_PLFLNFOB_03931) | 73729..74571 | - | 843 | WP_036983325.1 | hypothetical protein | VF |
LDO76_RS19595 (NVI2019_PLFLNFOB_03932) | 74789..75088 | - | 300 | WP_036978971.1 | hypothetical protein | - |
LDO76_RS19600 (NVI2019_PLFLNFOB_03933) | 75167..75478 | - | 312 | WP_036978970.1 | hypothetical protein | - |
LDO76_RS19610 (NVI2019_PLFLNFOB_03936) | 77931..79622 | + | 1692 | WP_224051120.1 | putative E3 ubiquitin-protein ligase ipaH7.8 | VF |
LDO76_RS19615 (NVI2019_PLFLNFOB_03938) | 79990..81201 | + | 1212 | Protein_61 | IS3 family transposase ISAlg | Transposase |
LDO76_RS19620 (NVI2019_PLFLNFOB_03939) | 81569..81940 | + | 372 | WP_224051121.1 | Chaperone protein sicP | VF |
LDO76_RS19625 (NVI2019_PLFLNFOB_03940) | 81970..83658 | + | 1689 | WP_224051122.1 | Secreted effector protein SptP | VF |
LDO76_RS19630 (NVI2019_PLFLNFOB_03941) | 84323..84712 | - | 390 | WP_224051123.1 | type II secretion system pilot lipoprotein GspS | - |
LDO76_RS19635 (NVI2019_PLFLNFOB_03942) | 84760..85563 | - | 804 | WP_282563859.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
LDO76_RS19640 (NVI2019_PLFLNFOB_03943) | 85673..86185 | - | 513 | WP_224051125.1 | Type II secretion system protein M | VF |
LDO76_RS19645 (NVI2019_PLFLNFOB_03944) | 86178..87296 | - | 1119 | WP_282563830.1 | Type II secretion system protein L | VF |
LDO76_RS19650 (NVI2019_PLFLNFOB_03945) | 87230..88309 | - | 1080 | WP_282563831.1 | Putative type II secretion system protein K | VF |
LDO76_RS19655 (NVI2019_PLFLNFOB_03946) | 88309..88902 | - | 594 | WP_224051071.1 | Type II secretion system protein J | VF |
LDO76_RS19660 (NVI2019_PLFLNFOB_03947) | 88887..89264 | - | 378 | WP_282563832.1 | Type II secretion system protein I | VF |
LDO76_RS19665 (NVI2019_PLFLNFOB_03948) | 89216..89770 | - | 555 | WP_282563833.1 | Putative type II secretion system protein H | VF |
LDO76_RS19670 (NVI2019_PLFLNFOB_03949) | 89725..90234 | - | 510 | WP_282564490.1 | Type II secretion system protein G | VF |
LDO76_RS19675 (NVI2019_PLFLNFOB_03950) | 90262..91482 | - | 1221 | Protein_73 | Type II secretion system protein F | VF |
LDO76_RS19680 (NVI2019_PLFLNFOB_03951) | 91442..92989 | - | 1548 | WP_282563834.1 | Type II secretion system protein E | VF |
LDO76_RS19685 (NVI2019_PLFLNFOB_03952) | 92971..94929 | - | 1959 | WP_282563861.1 | Secretin PulD | VF |
LDO76_RS19690 (NVI2019_PLFLNFOB_03953) | 94957..95784 | - | 828 | WP_224051078.1 | Type II secretion system protein C | VF |
LDO76_RS19695 (NVI2019_PLFLNFOB_03954) | 95902..98559 | - | 2658 | WP_224051079.1 | Metalloprotease StcE | VF |
LDO76_RS19700 | 99281..100304 | - | 1024 | Protein_78 | IS630 family transposase | - |
LDO76_RS19710 (NVI2019_PLFLNFOB_03956) | 102094..102960 | + | 867 | WP_224051081.1 | Effector protein YopJ | VF |
LDO76_RS19715 (NVI2019_PLFLNFOB_03957) | 103739..104350 | + | 612 | WP_282563836.1 | hypothetical protein | VF |
LDO76_RS19720 (NVI2019_PLFLNFOB_03958) | 104431..109572 | + | 5142 | WP_263422647.1 | hypothetical protein | VF |
LDO76_RS19730 (NVI2019_PLFLNFOB_03962) | 111406..112653 | + | 1248 | WP_282563837.1 | hypothetical protein | VF |
LDO76_RS19735 (NVI2019_PLFLNFOB_03963) | 112836..114047 | - | 1212 | Protein_84 | IS3 family transposase ISAlg | Transposase |
LDO76_RS19740 (NVI2019_PLFLNFOB_03965) | 114071..115297 | - | 1227 | WP_282563838.1 | hypothetical protein | VF |
LDO76_RS19745 | 116207..117153 | + | 947 | Protein_86 | IS3 family transposase | - |
LDO76_RS19750 | 117168..117419 | + | 252 | Protein_87 | helix-turn-helix domain-containing protein | - |
LDO76_RS19755 (NVI2019_PLFLNFOB_03966) | 117791..118069 | - | 279 | WP_036979198.1 | ribbon-helix-helix protein, CopG family | - |
LDO76_RS19760 (NVI2019_PLFLNFOB_03967) | 118021..118707 | - | 687 | WP_282563839.1 | AAA family ATPase | - |
LDO76_RS19765 (NVI2019_PLFLNFOB_03969) | 119310..120521 | + | 1212 | Protein_90 | IS3 family transposase ISAlg | Transposase |
LDO76_RS19770 (NVI2019_PLFLNFOB_03970) | 120567..120914 | + | 348 | WP_051420173.1 | ParB/Srx family N-terminal domain-containing protein | - |
LDO76_RS21080 | 120935..121057 | + | 123 | WP_263422648.1 | hypothetical protein | - |
LDO76_RS19775 (NVI2019_PLFLNFOB_03971) | 121412..121708 | + | 297 | WP_282563840.1 | hypothetical protein | - |
LDO76_RS19780 (NVI2019_PLFLNFOB_03972) | 121651..122184 | + | 534 | WP_282563841.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
LDO76_RS19785 | 122184..122608 | + | 425 | Protein_95 | recombinase family protein | - |
LDO76_RS19790 (NVI2019_PLFLNFOB_03974) | 122780..123031 | + | 252 | WP_036974972.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
LDO76_RS19795 (NVI2019_PLFLNFOB_03975) | 123021..123302 | + | 282 | WP_036979529.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
LDO76_RS19800 | 123531..123833 | + | 303 | Protein_98 | recombinase family protein | - |
LDO76_RS19810 (NVI2019_PLFLNFOB_03977) | 124078..124347 | + | 270 | WP_036979554.1 | plasmid partitioning/stability family protein | - |
LDO76_RS19815 (NVI2019_PLFLNFOB_03978) | 124542..124820 | + | 279 | WP_230087585.1 | S24 family peptidase | - |
LDO76_RS19820 (NVI2019_PLFLNFOB_03979) | 124933..126201 | + | 1269 | WP_036979530.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
LDO76_RS19825 (NVI2019_PLFLNFOB_03980) | 126408..126734 | + | 327 | WP_036979532.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
LDO76_RS19830 (NVI2019_PLFLNFOB_03981) | 126721..126993 | + | 273 | WP_036979555.1 | helix-turn-helix transcriptional regulator | - |
LDO76_RS19835 (NVI2019_PLFLNFOB_03982) | 127088..127297 | + | 210 | WP_036979533.1 | hypothetical protein | - |
LDO76_RS19840 (NVI2019_PLFLNFOB_03983) | 128053..128304 | + | 252 | WP_036979535.1 | hypothetical protein | - |
LDO76_RS19845 (NVI2019_PLFLNFOB_03984) | 128346..128708 | + | 363 | WP_282563842.1 | hypothetical protein | - |
LDO76_RS19850 (NVI2019_PLFLNFOB_03985) | 128776..129018 | + | 243 | WP_224055086.1 | hypothetical protein | - |
LDO76_RS19855 (NVI2019_PLFLNFOB_03986) | 129062..129508 | + | 447 | WP_051459499.1 | hypothetical protein | - |
LDO76_RS19860 (NVI2019_PLFLNFOB_03987) | 129539..129871 | + | 333 | WP_051420258.1 | N-6 DNA methylase | - |
LDO76_RS21250 | 129860..130186 | - | 327 | WP_282563843.1 | hypothetical protein | - |
LDO76_RS19865 (NVI2019_PLFLNFOB_03988) | 130240..130515 | - | 276 | WP_036979539.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
LDO76_RS19870 (NVI2019_PLFLNFOB_03989) | 130454..130747 | - | 294 | WP_282563844.1 | DUF6290 family protein | - |
LDO76_RS19875 | 131311..131735 | - | 425 | Protein_113 | transglycosylase SLT domain-containing protein | - |
LDO76_RS19880 (NVI2019_PLFLNFOB_03991) | 132202..132462 | + | 261 | WP_051420257.1 | relaxosome protein TraM | - |
LDO76_RS21085 | 132475..132633 | + | 159 | WP_282564770.1 | hypothetical protein | - |
LDO76_RS19885 | 132719..132934 | + | 216 | WP_282563845.1 | hypothetical protein | - |
LDO76_RS19890 (NVI2019_PLFLNFOB_03992) | 133814..134005 | + | 192 | WP_036979543.1 | TraY domain-containing protein | - |
LDO76_RS19895 (NVI2019_PLFLNFOB_03993) | 134331..134627 | + | 297 | WP_282563846.1 | type IV conjugative transfer system pilin TraA | - |
LDO76_RS19900 (NVI2019_PLFLNFOB_03994) | 134649..134954 | + | 306 | WP_036979544.1 | type IV conjugative transfer system protein TraL | - |
LDO76_RS19905 (NVI2019_PLFLNFOB_03995) | 134969..135538 | + | 570 | WP_224051089.1 | type IV conjugative transfer system protein TraE | - |
LDO76_RS19910 (NVI2019_PLFLNFOB_03997) | 135767..136114 | + | 348 | WP_224051090.1 | hypothetical protein | - |
LDO76_RS21255 | 136227..136727 | + | 501 | Protein_122 | TrbI/VirB10 family protein | - |
LDO76_RS19925 (NVI2019_PLFLNFOB_04000) | 137139..137626 | + | 488 | Protein_123 | transcription/translation regulatory transformer protein RfaH | - |
LDO76_RS19930 (NVI2019_PLFLNFOB_04001) | 137740..138081 | + | 342 | WP_224051091.1 | TraV family lipoprotein | - |
LDO76_RS19935 (NVI2019_PLFLNFOB_04002) | 138083..140440 | + | 2358 | WP_224051092.1 | type IV secretion system protein TraC | - |
LDO76_RS19940 (NVI2019_PLFLNFOB_04003) | 140468..140794 | + | 327 | WP_224051093.1 | hypothetical protein | - |
LDO76_RS19945 (NVI2019_PLFLNFOB_04004) | 140770..141195 | + | 426 | WP_071992439.1 | type-F conjugative transfer system protein TrbI | - |
LDO76_RS19950 | 141206..141847 | + | 642 | Protein_128 | type-F conjugative transfer system protein TraW | - |
LDO76_RS19955 (NVI2019_PLFLNFOB_04007) | 141835..142830 | + | 996 | Protein_129 | conjugal transfer pilus assembly protein TraU | - |
LDO76_RS19960 (NVI2019_PLFLNFOB_04009) | 142845..143480 | + | 636 | WP_282563847.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
LDO76_RS19965 (NVI2019_PLFLNFOB_04010) | 143462..144289 | + | 828 | WP_051420221.1 | hypothetical protein | - |
LDO76_RS19970 (NVI2019_PLFLNFOB_04011) | 144479..145330 | + | 852 | WP_282563862.1 | conjugal transfer protein TraN | - |
LDO76_RS19975 (NVI2019_PLFLNFOB_04012) | 145300..145596 | + | 297 | WP_282563840.1 | hypothetical protein | - |
LDO76_RS19980 (NVI2019_PLFLNFOB_04013) | 145539..146072 | + | 534 | WP_282563841.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
LDO76_RS19985 | 146104..146385 | + | 282 | WP_036978103.1 | hypothetical protein | - |
LDO76_RS19995 (NVI2019_PLFLNFOB_04015) | 146913..147191 | + | 279 | WP_036978105.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
LDO76_RS20000 (NVI2019_PLFLNFOB_04016) | 147191..147505 | + | 315 | WP_036978107.1 | HigA family addiction module antitoxin | Antitoxin Detail |
LDO76_RS20010 (NVI2019_PLFLNFOB_04019) | 148587..149695 | + | 1109 | Protein_138 | conjugal transfer protein TraH | - |
LDO76_RS20020 | 151108..152249 | - | 1142 | Protein_139 | IS256 family transposase | - |
LDO76_RS20030 (NVI2019_PLFLNFOB_04024) | 152919..153482 | - | 564 | WP_224051097.1 | hypothetical protein | - |
LDO76_RS20035 (NVI2019_PLFLNFOB_04025) | 153492..154688 | - | 1197 | WP_224051098.1 | hypothetical protein | - |
LDO76_RS20040 (NVI2019_PLFLNFOB_04026) | 154706..157357 | - | 2652 | WP_224051099.1 | Outer membrane usher protein FimD | VF |
LDO76_RS20045 (NVI2019_PLFLNFOB_04027) | 157314..158042 | - | 729 | WP_224051100.1 | molecular chaperone | - |
LDO76_RS20050 (NVI2019_PLFLNFOB_04028) | 158058..158729 | - | 672 | WP_224051101.1 | Chaperone protein FimC | VF |
LDO76_RS20055 (NVI2019_PLFLNFOB_04029) | 158803..159342 | - | 540 | WP_224051102.1 | fimbrial protein | - |
LDO76_RS20060 (NVI2019_PLFLNFOB_04031) | 159896..160243 | + | 348 | WP_282563848.1 | hypothetical protein | - |
LDO76_RS20070 (NVI2019_PLFLNFOB_04033) | 160475..160996 | + | 522 | WP_282563849.1 | Fic family protein | - |
LDO76_RS20075 | 161045..162186 | - | 1142 | Protein_148 | IS256 family transposase | - |
LDO76_RS19295 (NVI2019_PLFLNFOB_04036) | 162564..171362 | - | 8799 | WP_282564771.1 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
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