MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 132884 bp
Accession: NZ_LT992492 Location: 2310264..2443147 Organism: Vibrio cholerae strain 4295STDY6534248 Replicon: chromosome
Accession: NZ_LT992492 Location: 2310264..2443147 Organism: Vibrio cholerae strain 4295STDY6534248 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DG169_RS10835 () | 2306031..2306555 | + | 525 | WP_001226222.1 | inosine/xanthosine triphosphatase | - |
| DG169_RS10840 () | 2306633..2306944 | - | 312 | WP_000250616.1 | trp operon repressor | - |
| DG169_RS10845 () | 2306999..2308945 | - | 1947 | WP_000197615.1 | murein transglycosylase | - |
| DG169_RS10850 () | 2309307..2310974 | + | 1668 | WP_000852865.1 | energy-dependent translational throttle protein EttA | - |
| DG169_RS10855 () | 2311145..2311516 | + | 372 | WP_000570783.1 | PilZ domain-containing protein | - |
| DG169_RS10860 () | 2311583..2312710 | - | 1128 | WP_000257629.1 | T-protein | VF |
| DG169_RS10865 () | 2312723..2313796 | - | 1074 | WP_000747937.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| DG169_RS10870 () | 2314038..2315714 | + | 1677 | WP_000364257.1 | Sensor histidine kinase BtsS | VF |
| DG169_RS10875 () | 2315724..2316437 | + | 714 | WP_000947378.1 | Transcriptional regulatory protein BtsR | VF |
| DG169_RS10880 () | 2316464..2317456 | - | 993 | WP_000529115.1 | beta-N-acetylhexosaminidase | - |
| DG169_RS10885 () | 2317562..2318674 | + | 1113 | WP_000840717.1 | anhydro-N-acetylmuramic acid kinase | - |
| DG169_RS10890 () | 2318692..2319615 | + | 924 | WP_000180252.1 | N-acetylmuramic acid 6-phosphate etherase | - |
| DG169_RS10895 () | 2319639..2321435 | - | 1797 | WP_000544193.1 | sodium:proton antiporter | - |
| DG169_RS10900 () | 2321454..2321795 | - | 342 | WP_001883835.1 | DUF2799 domain-containing protein | - |
| DG169_RS10905 () | 2322048..2323532 | + | 1485 | WP_000964317.1 | carbon starvation protein A | - |
| DG169_RS10910 () | 2323669..2324631 | - | 963 | WP_001883831.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| DG169_RS10915 () | 2324666..2325100 | - | 435 | WP_001068088.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| DG169_RS10920 () | 2325263..2325778 | - | 516 | WP_000071968.1 | Lipoprotein signal peptidase | VF |
| DG169_RS10925 () | 2325794..2328643 | - | 2850 | WP_000006088.1 | isoleucine--tRNA ligase | - |
| DG169_RS10930 () | 2328674..2329642 | - | 969 | WP_000420406.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DG169_RS10935 () | 2329711..2331273 | - | 1563 | WP_001911253.1 | murein biosynthesis integral membrane protein MurJ | - |
| DG169_RS10940 () | 2331531..2331791 | + | 261 | WP_000002742.1 | 30S ribosomal protein S20 | - |
| DG169_RS10945 () | 2331860..2332162 | - | 303 | WP_001053149.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| DG169_RS10950 () | 2332385..2333275 | - | 891 | WP_000018876.1 | Transcriptional activator protein NhaR | VF |
| DG169_RS10955 () | 2333670..2334818 | + | 1149 | WP_000609761.1 | Na/Pi cotransporter family protein | - |
| DG169_RS10960 () | 2334911..2335762 | - | 852 | WP_001250353.1 | thymidylate synthase | - |
| DG169_RS10965 () | 2335772..2336587 | - | 816 | WP_001135560.1 | prolipoprotein diacylglyceryl transferase | - |
| DG169_RS10970 () | 2336616..2337410 | - | 795 | WP_001019422.1 | sulfite exporter TauE/SafE family protein | - |
| DG169_RS10975 () | 2337420..2339666 | - | 2247 | WP_000952226.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| DG169_RS10980 () | 2339669..2340187 | - | 519 | WP_001911254.1 | RNA pyrophosphohydrolase | - |
| DG169_RS10985 () | 2340818..2341483 | + | 666 | WP_000801223.1 | DNA mismatch repair endonuclease MutH | - |
| DG169_RS10990 () | 2341700..2342734 | + | 1035 | WP_001200442.1 | NADP(H)-dependent aldo-keto reductase | - |
| DG169_RS10995 () | 2342772..2343023 | - | 252 | WP_001249919.1 | hypothetical protein | - |
| DG169_RS11000 () | 2343601..2344935 | - | 1335 | WP_000107102.1 | Transcriptional regulatory protein ZraR | VF |
| DG169_RS11005 () | 2345209..2346741 | - | 1533 | WP_000128764.1 | lysine--tRNA ligase | - |
| DG169_RS11015 () | 2348040..2349353 | - | 1314 | WP_000815019.1 | branched-chain amino acid transport system II carrier protein | - |
| DG169_RS11020 () | 2349662..2350384 | + | 723 | WP_000856169.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| DG169_RS11025 () | 2350472..2351743 | + | 1272 | WP_000597951.1 | ATP-dependent RNA helicase SrmB | - |
| DG169_RS11030 () | 2351865..2353454 | - | 1590 | WP_000013192.1 | peptide chain release factor 3 | - |
| DG169_RS11035 () | 2353711..2354358 | - | 648 | WP_000854920.1 | LexA family transcriptional regulator | - |
| DG169_RS11040 () | 2354476..2354727 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| DG169_RS11045 () | 2354783..2355652 | + | 870 | WP_001205851.1 | hypothetical protein | - |
| DG169_RS11050 () | 2355693..2356301 | + | 609 | WP_001918295.1 | hypothetical protein | - |
| DG169_RS11055 () | 2356288..2356836 | + | 549 | WP_000848909.1 | lytic transglycosylase domain-containing protein | - |
| DG169_RS11060 () | 2356833..2357132 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| DG169_RS11065 () | 2357129..2357662 | + | 534 | WP_000566752.1 | hypothetical protein | - |
| DG169_RS11070 () | 2357717..2358148 | + | 432 | WP_001883790.1 | hypothetical protein | - |
| DG169_RS11075 () | 2358181..2361750 | - | 3570 | WP_000263682.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| DG169_RS11080 () | 2361754..2363142 | - | 1389 | WP_000755290.1 | conjugal transfer protein TraH | - |
| DG169_RS11085 () | 2363145..2364089 | - | 945 | WP_001260106.1 | thioredoxin family protein | - |
| DG169_RS11090 () | 2364824..2368630 | + | 3807 | WP_000838535.1 | response regulator | - |
| DG169_RS11095 () | 2368636..2369565 | + | 930 | WP_001271628.1 | Response regulator PleD | VF |
| DG169_RS11100 () | 2369828..2370535 | - | 708 | WP_000989527.1 | hypothetical protein | - |
| DG169_RS11105 () | 2370626..2371699 | - | 1074 | WP_001207588.1 | toprim domain-containing protein | - |
| DG169_RS11110 () | 2371791..2372132 | - | 342 | WP_001014427.1 | hypothetical protein | - |
| DG169_RS11115 () | 2372132..2372629 | - | 498 | WP_000791199.1 | DNA repair protein RadC | - |
| DG169_RS11120 () | 2372711..2374366 | - | 1656 | WP_001016321.1 | VWA domain-containing protein | - |
| DG169_RS11125 () | 2374436..2374876 | - | 441 | WP_001192020.1 | hypothetical protein | - |
| DG169_RS11130 () | 2374938..2375891 | - | 954 | WP_000027442.1 | DUF3150 domain-containing protein | - |
| DG169_RS11135 () | 2375990..2376757 | - | 768 | WP_000970192.1 | hypothetical protein | - |
| DG169_RS11140 () | 2376757..2377716 | - | 960 | WP_000139693.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| DG169_RS11145 () | 2377926..2378942 | - | 1017 | WP_000862954.1 | YqaJ viral recombinase family protein | - |
| DG169_RS19800 () | 2379003..2379146 | - | 144 | WP_000167275.1 | hypothetical protein | - |
| DG169_RS11150 () | 2379228..2380046 | - | 819 | WP_000414661.1 | phage recombination protein Bet | - |
| DG169_RS11155 () | 2380126..2380545 | - | 420 | WP_000795987.1 | single-stranded DNA-binding protein | - |
| DG169_RS11160 () | 2380561..2380887 | - | 327 | WP_000455721.1 | hypothetical protein | - |
| DG169_RS11165 () | 2381255..2381857 | + | 603 | WP_000035786.1 | hypothetical protein | - |
| DG169_RS11170 () | 2381990..2382673 | + | 684 | WP_001082329.1 | endonuclease | - |
| DG169_RS11175 () | 2382786..2383850 | + | 1065 | WP_000852158.1 | hypothetical protein | - |
| DG169_RS11180 () | 2383850..2384935 | + | 1086 | WP_000678781.1 | hypothetical protein | - |
| DG169_RS11185 () | 2384942..2385622 | + | 681 | WP_000838013.1 | hypothetical protein | - |
| DG169_RS11190 () | 2385715..2389413 | - | 3699 | WP_000805218.1 | conjugal transfer protein TraN | - |
| DG169_RS11195 () | 2389416..2390444 | - | 1029 | WP_000735887.1 | TraU family protein | - |
| DG169_RS11200 () | 2390428..2391552 | - | 1125 | WP_025989328.1 | pilus assembly protein | - |
| DG169_RS11205 () | 2391563..2392075 | - | 513 | WP_001166556.1 | S26 family signal peptidase | - |
| DG169_RS11210 () | 2392059..2392406 | - | 348 | WP_001044650.1 | hypothetical protein | - |
| DG169_RS11215 () | 2392399..2394798 | - | 2400 | WP_000648041.1 | type IV secretion system protein TraC | - |
| DG169_RS11220 () | 2394798..2395490 | - | 693 | WP_001228924.1 | DsbC family protein | - |
| DG169_RS11225 () | 2395622..2396560 | - | 939 | WP_000356587.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| DG169_RS11230 () | 2396553..2397344 | - | 792 | WP_000095577.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| DG169_RS11235 () | 2397565..2397951 | - | 387 | WP_000180225.1 | hypothetical protein | - |
| DG169_RS11240 () | 2397948..2398520 | - | 573 | WP_139057167.1 | type IV conjugative transfer system lipoprotein TraV | - |
| DG169_RS11245 () | 2398595..2399884 | - | 1290 | WP_001883765.1 | TraB/VirB10 family protein | - |
| DG169_RS11250 () | 2399887..2400783 | - | 897 | WP_032467354.1 | type-F conjugative transfer system secretin TraK | - |
| DG169_RS11255 () | 2400767..2401393 | - | 627 | WP_000667169.1 | hypothetical protein | - |
| DG169_RS11260 () | 2401390..2401671 | - | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| DG169_RS11265 () | 2401852..2402175 | + | 324 | WP_000118545.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| DG169_RS11270 () | 2402172..2402450 | + | 279 | WP_000058216.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DG169_RS11275 () | 2402476..2403111 | - | 636 | WP_000033753.1 | DUF4400 domain-containing protein | - |
| DG169_RS11280 () | 2403098..2403658 | - | 561 | WP_000546510.1 | hypothetical protein | - |
| DG169_RS11285 () | 2403668..2405488 | - | 1821 | WP_000661887.1 | conjugative transfer system coupling protein TraD | - |
| DG169_RS11290 () | 2405537..2407687 | - | 2151 | WP_000475917.1 | TraI domain-containing protein | - |
| DG169_RS11295 () | 2407842..2410493 | - | 2652 | WP_000494309.1 | AAA family ATPase | - |
| DG169_RS11300 () | 2410537..2412567 | - | 2031 | WP_197708382.1 | protease Lon-related BREX system protein BrxL | - |
| DG169_RS11305 () | 2412629..2415286 | - | 2658 | WP_001167232.1 | BREX-1 system phosphatase PglZ type A | - |
| DG169_RS11310 () | 2415286..2418858 | - | 3573 | WP_001090323.1 | BREX-1 system adenine-specific DNA-methyltransferase PglX | - |
| DG169_RS11315 () | 2418862..2419620 | - | 759 | WP_000605305.1 | hypothetical protein | - |
| DG169_RS11320 () | 2419617..2420786 | - | 1170 | WP_000595812.1 | AAA family ATPase | - |
| DG169_RS11325 () | 2420797..2424474 | - | 3678 | WP_000687849.1 | BREX system P-loop protein BrxC | - |
| DG169_RS11330 () | 2424493..2425077 | - | 585 | WP_000645939.1 | DUF1788 domain-containing protein | - |
| DG169_RS11335 () | 2425074..2425673 | - | 600 | WP_001080201.1 | DUF1819 family protein | - |
| DG169_RS11340 () | 2425683..2426609 | - | 927 | WP_001883760.1 | WYL domain-containing protein | - |
| DG169_RS11345 () | 2426678..2426992 | - | 315 | WP_000284109.1 | hypothetical protein | - |
| DG169_RS11350 () | 2427066..2427974 | - | 909 | WP_000196207.1 | DNA polymerase III subunit epsilon | - |
| DG169_RS11355 () | 2428357..2428614 | - | 258 | WP_000182836.1 | hypothetical protein | - |
| DG169_RS11360 () | 2428613..2429062 | + | 450 | WP_000116661.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| DG169_RS11365 () | 2429070..2429303 | + | 234 | Protein_2130 | DNA polymerase V subunit UmuC | - |
| DG169_RS11375 () | 2429988..2431295 | - | 1308 | Protein_2131 | Tn3 family transposase TnpA_ISShfr9 | Transposase |
| DG169_RS11380 () | 2431433..2432011 | - | 579 | Protein_2132 | Tn3 family transposase TnpA_IS3000 | Transposase |
| DG169_RS11385 () | 2432421..2433458 | + | 1038 | Protein_2133 | translesion error-prone DNA polymerase V subunit UmuC | - |
| DG169_RS11390 () | 2433469..2433912 | - | 444 | WP_000348526.1 | hypothetical protein | - |
| DG169_RS11395 () | 2434377..2435351 | + | 975 | WP_000497805.1 | ParM/StbA family protein | - |
| DG169_RS11400 () | 2435354..2435623 | + | 270 | WP_001267005.1 | hypothetical protein | - |
| DG169_RS11405 () | 2435625..2436866 | + | 1242 | WP_001218617.1 | Prophage integrase IntS ; Integrase | Integrase |
| DG169_RS11410 () | 2436883..2437077 | - | 195 | WP_000127614.1 | DNA-binding protein | - |
| DG169_RS11420 () | 2437961..2440018 | + | 2058 | WP_000160066.1 | hypothetical protein | VF |
| DG169_RS11425 () | 2440007..2440456 | - | 450 | WP_000214238.1 | [Ribosomal protein S18]-alanine N-acetyltransferase | VF |
| DG169_RS11430 () | 2440453..2440860 | - | 408 | WP_000953212.1 | DNA polymerase III subunit psi | - |
| DG169_RS11435 () | 2440971..2441474 | - | 504 | WP_000908540.1 | N-acetyltransferase | - |
| DG169_RS11440 () | 2441458..2441985 | - | 528 | WP_000932672.1 | SCP2 domain-containing protein | - |
| DG169_RS11445 () | 2442218..2444272 | + | 2055 | WP_001111411.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| DG169_RS11450 () | 2444380..2445393 | + | 1014 | WP_000421327.1 | U32 family peptidase | - |
| DG169_RS11455 () | 2445405..2446283 | + | 879 | WP_000872504.1 | U32 family peptidase | - |
| DG169_RS11460 () | 2446336..2447673 | - | 1338 | WP_000981941.1 | sodium-coupled multidrug efflux MATE transporter VcrM | - |
| DG169_RS11465 () | 2447720..2448127 | - | 408 | WP_000887847.1 | MarR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|