MGE detailed information
MGE type: Prophage MGE length: 58773 bp
Accession: NZ_LT992465 Location: 53712..112484 Organism: Staphylococcus aureus isolate 6_LA_232 Replicon: chromosome
Accession: NZ_LT992465 Location: 53712..112484 Organism: Staphylococcus aureus isolate 6_LA_232 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE62_RS00280 () | 49604..50053 | + | 450 | WP_001019333.1 | acetyl-CoA carboxylase biotin carboxyl carrier protein subunit | - |
| DXE62_RS00285 () | 50067..51428 | + | 1362 | WP_000942734.1 | acetyl-CoA carboxylase biotin carboxylase subunit | - |
| DXE62_RS00290 () | 51428..52180 | + | 753 | WP_001217224.1 | 5-oxoprolinase subunit PxpA | - |
| DXE62_RS00295 () | 52192..53424 | + | 1233 | WP_000533225.1 | divalent metal cation transporter | - |
| DXE62_RS00300 () | 53712..54425 | + | 714 | Protein_58 | Fic family protein | - |
| DXE62_RS00305 () | 54530..55735 | - | 1206 | WP_000264184.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| DXE62_RS00310 () | 55845..56459 | + | 615 | WP_000191461.1 | hypothetical protein | - |
| DXE62_RS00315 () | 56456..56602 | - | 147 | WP_001013104.1 | hypothetical protein | - |
| DXE62_RS00320 () | 56832..57416 | - | 585 | WP_000825948.1 | hypothetical protein | - |
| DXE62_RS00325 () | 57434..57895 | - | 462 | WP_000525004.1 | hypothetical protein | Toxin Detail |
| DXE62_RS00330 () | 57908..58231 | - | 324 | WP_114637613.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| DXE62_RS00335 () | 58395..58643 | + | 249 | WP_000272859.1 | helix-turn-helix domain-containing protein | - |
| DXE62_RS00340 () | 58656..59099 | + | 444 | WP_000435362.1 | hypothetical protein | - |
| DXE62_RS14715 () | 59114..59263 | + | 150 | WP_000771849.1 | hypothetical protein | - |
| DXE62_RS00345 () | 59304..59516 | - | 213 | WP_000362644.1 | hypothetical protein | - |
| DXE62_RS00350 () | 59587..59730 | + | 144 | WP_000939498.1 | hypothetical protein | - |
| DXE62_RS00355 () | 59720..59929 | - | 210 | WP_000642492.1 | hypothetical protein | - |
| DXE62_RS00360 () | 59985..60230 | + | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| DXE62_RS00365 () | 60199..60564 | - | 366 | WP_001128433.1 | hypothetical protein | - |
| DXE62_RS00370 () | 60619..60835 | + | 217 | Protein_73 | hypothetical protein | - |
| DXE62_RS00375 () | 60862..61125 | + | 264 | WP_001124195.1 | IS3 family transposase ISVa4 | Transposase |
| DXE62_RS00380 () | 61137..61298 | + | 162 | WP_001285949.1 | DUF1270 domain-containing protein | - |
| DXE62_RS00385 () | 61377..61700 | + | 324 | WP_000174994.1 | hypothetical protein | - |
| DXE62_RS00390 () | 61715..62077 | + | 363 | WP_031775157.1 | hypothetical protein | - |
| DXE62_RS00395 () | 62074..63240 | + | 1167 | WP_031795549.1 | DUF2800 domain-containing protein | - |
| DXE62_RS00400 () | 63266..63823 | + | 558 | WP_000645042.1 | DUF2815 family protein | - |
| DXE62_RS00405 () | 63892..65844 | + | 1953 | WP_078098872.1 | DNA polymerase | - |
| DXE62_RS00410 () | 65857..66041 | + | 185 | Protein_81 | DUF3113 family protein | - |
| DXE62_RS00415 () | 66041..66442 | + | 402 | WP_000113974.1 | PVL family protein | - |
| DXE62_RS00420 () | 66442..66696 | + | 255 | WP_000022727.1 | DUF3310 domain-containing protein | - |
| DXE62_RS00425 () | 66696..66944 | + | 249 | WP_001802342.1 | hypothetical protein | - |
| DXE62_RS00430 () | 66958..67164 | + | 207 | WP_000693989.1 | hypothetical protein | - |
| DXE62_RS00435 () | 67167..67574 | + | 408 | WP_000695771.1 | hypothetical protein | - |
| DXE62_RS00440 () | 67571..67765 | + | 195 | WP_000983950.1 | hypothetical protein | - |
| DXE62_RS00445 () | 67762..68199 | + | 438 | WP_000982714.1 | hypothetical protein | - |
| DXE62_RS00450 () | 68196..68561 | + | 366 | WP_001105602.1 | hypothetical protein | - |
| DXE62_RS00455 () | 68554..68802 | + | 249 | WP_031795590.1 | DUF1024 family protein | - |
| DXE62_RS00460 () | 68795..69331 | + | 537 | WP_000185680.1 | dUTPase | - |
| DXE62_RS00465 () | 69368..69574 | + | 207 | WP_031795553.1 | DUF1381 domain-containing protein | - |
| DXE62_RS00470 () | 69571..69723 | + | 153 | WP_000595213.1 | transcriptional activator RinB | - |
| DXE62_RS00475 () | 69791..69991 | + | 201 | WP_031794940.1 | DUF1514 family protein | - |
| DXE62_RS00480 () | 70043..72490 | + | 2448 | WP_031795554.1 | virulence-associated E family protein | - |
| DXE62_RS00485 () | 72593..72697 | - | 105 | WP_011447017.1 | hypothetical protein | - |
| DXE62_RS00490 () | 72831..73121 | + | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| DXE62_RS00495 () | 73102..74469 | + | 1368 | WP_078098871.1 | DEAD/DEAH box helicase | - |
| DXE62_RS00500 () | 74482..74919 | + | 438 | WP_031795556.1 | transcriptional regulator | - |
| DXE62_RS00505 () | 75076..75390 | + | 315 | WP_031775147.1 | HNH endonuclease | - |
| DXE62_RS00510 () | 75518..75823 | + | 306 | WP_000778933.1 | P27 family phage terminase small subunit | - |
| DXE62_RS00515 () | 75813..77504 | + | 1692 | WP_000153538.1 | terminase large subunit | - |
| DXE62_RS00520 () | 77509..78747 | + | 1239 | WP_001100659.1 | phage portal protein | - |
| DXE62_RS00525 () | 78731..79504 | + | 774 | WP_000061862.1 | Clp protease ClpP | - |
| DXE62_RS00530 () | 79516..80679 | + | 1164 | WP_001142738.1 | phage major capsid protein | - |
| DXE62_RS00535 () | 80748..81026 | + | 279 | WP_000050973.1 | head-tail connector protein | - |
| DXE62_RS00540 () | 81038..81370 | + | 333 | WP_000395498.1 | hypothetical protein | - |
| DXE62_RS00545 () | 81367..81768 | + | 402 | WP_000110017.1 | hypothetical protein | - |
| DXE62_RS00550 () | 81769..82164 | + | 396 | WP_031863976.1 | DUF3168 domain-containing protein | - |
| DXE62_RS00555 () | 82199..82840 | + | 642 | WP_031865961.1 | tail protein | - |
| DXE62_RS00560 () | 82931..83386 | + | 456 | WP_000169128.1 | Ig domain-containing protein | - |
| DXE62_RS00565 () | 83444..83794 | + | 351 | WP_000589165.1 | hypothetical protein | - |
| DXE62_RS00570 () | 83836..83994 | + | 159 | WP_000438833.1 | hypothetical protein | - |
| DXE62_RS00575 () | 84008..90208 | + | 6201 | WP_114637614.1 | phage tail tape measure protein | - |
| DXE62_RS00580 () | 90208..91032 | + | 825 | WP_031918864.1 | phage tail family protein | - |
| DXE62_RS00585 () | 91041..92624 | + | 1584 | WP_000384474.1 | prophage endopeptidase tail family protein | - |
| DXE62_RS00590 () | 92624..92914 | + | 291 | WP_000179860.1 | hypothetical protein | - |
| DXE62_RS00595 () | 92930..94840 | + | 1911 | WP_000429551.1 | minor structural protein | - |
| DXE62_RS00600 () | 94840..96306 | + | 1467 | WP_000067142.1 | BppU family phage baseplate upper protein | - |
| DXE62_RS00605 () | 96306..96695 | + | 390 | WP_001166598.1 | DUF2977 domain-containing protein | - |
| DXE62_RS00610 () | 96688..96852 | + | 165 | WP_000916021.1 | XkdX family protein | - |
| DXE62_RS00615 () | 96898..97197 | + | 300 | WP_031861265.1 | DUF2951 family protein | - |
| DXE62_RS00620 () | 97333..97635 | + | 303 | WP_000339141.1 | phage holin | - |
| DXE62_RS00625 () | 97647..99101 | + | 1455 | WP_114637615.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DXE62_RS00635 () | 99839..100348 | + | 510 | Protein_125 | Fic family protein | - |
| DXE62_RS00640 () | 100763..101515 | + | 753 | WP_001807829.1 | Enterotoxin type A | VF |
| DXE62_RS00645 () | 101718..101987 | - | 270 | WP_000829750.1 | hypothetical protein | - |
| DXE62_RS00650 () | 102301..102987 | + | 687 | WP_000579272.1 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase | - |
| DXE62_RS00655 () | 103007..103534 | + | 528 | WP_000524902.1 | YqeG family HAD IIIA-type phosphatase | - |
| DXE62_RS00660 () | 103535..104635 | + | 1101 | WP_001280151.1 | ribosome biogenesis GTPase YqeH | - |
| DXE62_RS00665 () | 104649..105455 | + | 807 | WP_000666746.1 | shikimate dehydrogenase | - |
| DXE62_RS00670 () | 105459..105749 | + | 291 | WP_000955234.1 | ribosome assembly RNA-binding protein YhbY | - |
| DXE62_RS00675 () | 105752..106321 | + | 570 | WP_000725164.1 | nicotinate (nicotinamide) nucleotide adenylyltransferase | - |
| DXE62_RS00680 () | 106311..106895 | + | 585 | WP_001019324.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| DXE62_RS00685 () | 106896..107249 | + | 354 | WP_001088020.1 | ribosome silencing factor | - |
| DXE62_RS00690 () | 107252..107968 | + | 717 | WP_000084838.1 | class I SAM-dependent methyltransferase | - |
| DXE62_RS00695 () | 108008..108694 | + | 687 | WP_001825349.1 | ComEA family DNA-binding protein | - |
| DXE62_RS00700 () | 108786..109247 | + | 462 | WP_000439690.1 | ComE operon protein 2 | - |
| DXE62_RS00705 () | 109252..111453 | + | 2202 | WP_001807826.1 | DNA internalization-related competence protein ComEC/Rec2 | - |
| DXE62_RS00710 () | 111510..112484 | + | 975 | WP_001282570.1 | DNA polymerase III subunit delta | - |
| DXE62_RS00715 () | 112529..112780 | - | 252 | WP_001274017.1 | 30S ribosomal protein S20 | - |
| DXE62_RS00720 () | 113126..114949 | + | 1824 | WP_000368338.1 | translation elongation factor 4 | - |
| DXE62_RS00730 () | 115571..116695 | + | 1125 | WP_000218095.1 | oxygen-independent coproporphyrinogen III oxidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|