MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86369 bp
Accession: NZ_LT963412 Location: 1..86369 Organism: Pseudomonas syringae isolate CFBP3840 Replicon: plasmid PP3
Accession: NZ_LT963412 Location: 1..86369 Organism: Pseudomonas syringae isolate CFBP3840 Replicon: plasmid PP3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H39_RS30000 () | 82..702 | - | 621 | WP_010204550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H39_RS30005 () | 910..1248 | + | 339 | WP_054071658.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H39_RS30010 () | 1248..1535 | + | 288 | WP_005622028.1 | helix-turn-helix domain-containing protein | - |
| C6H39_RS30015 () | 1597..2010 | + | 414 | WP_060403414.1 | hypothetical protein | - |
| C6H39_RS30040 () | 3723..4223 | + | 501 | WP_031598893.1 | Protein hcp1 | VF |
| C6H39_RS30045 () | 4247..4771 | + | 525 | WP_080719055.1 | DUF2778 domain-containing protein | - |
| C6H39_RS30060 () | 5306..5536 | - | 231 | WP_031598890.1 | carbon storage regulator | - |
| C6H39_RS30065 () | 5587..6141 | - | 555 | WP_031598886.1 | hypothetical protein | - |
| C6H39_RS30070 () | 6378..6866 | - | 489 | WP_024421281.1 | hypothetical protein | - |
| C6H39_RS30075 () | 7187..7867 | + | 681 | WP_005730279.1 | AAA family ATPase | - |
| C6H39_RS30080 () | 7858..8220 | + | 363 | WP_099456686.1 | hypothetical protein | - |
| C6H39_RS30085 () | 8718..9215 | - | 498 | WP_060402988.1 | GNAT family N-acetyltransferase | - |
| C6H39_RS30090 () | 9212..9493 | - | 282 | WP_060402987.1 | DUF1778 domain-containing protein | - |
| C6H39_RS30095 () | 9659..10627 | - | 969 | WP_060402986.1 | hypothetical protein | - |
| C6H39_RS30100 () | 11004..13094 | - | 2091 | Protein_14 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H39_RS30105 () | 13081..14166 | - | 1086 | WP_060404100.1 | thioredoxin fold domain-containing protein | - |
| C6H39_RS30110 () | 14259..14459 | + | 201 | WP_004644067.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| C6H39_RS30115 () | 14456..14833 | + | 378 | WP_003344395.1 | PIN domain-containing protein | Toxin Detail |
| C6H39_RS30120 () | 14823..16025 | - | 1203 | WP_044424879.1 | hypothetical protein | - |
| C6H39_RS30125 () | 16118..16777 | - | 660 | WP_044424882.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6H39_RS30130 () | 16764..18908 | - | 2145 | WP_060404099.1 | hypothetical protein | VF |
| C6H39_RS30135 () | 19039..19617 | - | 579 | WP_004642775.1 | conjugal transfer protein TraX | - |
| C6H39_RS30140 () | 19607..20821 | - | 1215 | WP_060404098.1 | conjugal transfer protein TraW | - |
| C6H39_RS30145 () | 20864..21100 | - | 237 | WP_007247241.1 | hypothetical protein | - |
| C6H39_RS30150 () | 21124..24180 | - | 3057 | WP_104721073.1 | conjugal transfer protein | - |
| C6H39_RS30155 () | 24155..24766 | - | 612 | WP_104721066.1 | conjugal transfer protein TraT | - |
| C6H39_RS30160 () | 24848..25243 | - | 396 | WP_005740383.1 | hypothetical protein | - |
| C6H39_RS30165 () | 25319..25861 | - | 543 | WP_003344373.1 | conjugal transfer protein TraQ | - |
| C6H39_RS30170 () | 25870..26580 | - | 711 | WP_010209696.1 | conjugal transfer protein TraP | - |
| C6H39_RS30175 () | 26577..27935 | - | 1359 | WP_104721074.1 | conjugal transfer protein TraO | - |
| C6H39_RS30180 () | 27941..28651 | - | 711 | Protein_30 | hypothetical protein | VF |
| C6H39_RS30190 () | 29158..29586 | + | 429 | WP_024420281.1 | GntR family transcriptional regulator | - |
| C6H39_RS30195 () | 29997..31310 | + | 1314 | WP_099456608.1 | replication initiation protein | - |
| C6H39_RS30205 () | 31578..32807 | - | 1230 | WP_015062536.1 | IS91 family transposase IS801 | Transposase |
| C6H39_RS30210 () | 32788..33069 | - | 282 | WP_015062535.1 | hypothetical protein | - |
| C6H39_RS31675 () | 33139..33294 | + | 156 | WP_158662094.1 | hypothetical protein | - |
| C6H39_RS30215 () | 33297..33524 | + | 228 | WP_004642455.1 | hypothetical protein | - |
| C6H39_RS30220 () | 33600..34175 | - | 576 | WP_060402810.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H39_RS30225 () | 34720..35541 | + | 822 | WP_005735297.1 | C58 family peptidase | - |
| C6H39_RS30230 () | 35580..35768 | + | 189 | Protein_39 | helix-turn-helix domain-containing protein | - |
| C6H39_RS32210 () | 35772..35984 | + | 213 | Protein_40 | DUF4158 domain-containing protein | - |
| C6H39_RS30240 () | 35982..36313 | + | 332 | Protein_41 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| C6H39_RS30245 () | 36418..37131 | - | 714 | WP_053479514.1 | UPF0149 family protein | - |
| C6H39_RS30250 () | 37342..37614 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H39_RS30255 () | 37604..37789 | - | 186 | WP_005730485.1 | hypothetical protein | Antitoxin Detail |
| C6H39_RS30260 () | 37840..38118 | - | 279 | WP_053479513.1 | hypothetical protein | - |
| C6H39_RS30265 () | 38211..38846 | - | 636 | WP_054068142.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H39_RS30275 () | 39379..39741 | - | 363 | WP_005730278.1 | hypothetical protein | - |
| C6H39_RS30280 () | 39732..40413 | - | 682 | Protein_48 | AAA family ATPase | - |
| C6H39_RS30285 () | 40725..41213 | + | 489 | WP_024421281.1 | hypothetical protein | - |
| C6H39_RS30290 () | 41398..41673 | + | 276 | Protein_50 | IS110 family transposase ISPsy16 | Transposase |
| C6H39_RS30295 () | 42034..42306 | - | 273 | WP_057430853.1 | hypothetical protein | - |
| C6H39_RS32215 () | 42403..42597 | - | 195 | Protein_52 | helix-turn-helix domain-containing protein | - |
| C6H39_RS32220 () | 42622..42720 | - | 99 | Protein_53 | hypothetical protein | - |
| C6H39_RS30305 () | 42892..43188 | + | 297 | WP_004666829.1 | coronamic acid biosynthesis protein CmaL | - |
| C6H39_RS30310 () | 43241..44254 | - | 1014 | WP_005741118.1 | IS30 family transposase IS1394 | Transposase |
| C6H39_RS30315 () | 44311..45369 | - | 1059 | Protein_56 | IS630 family transposase ISPsy32 | Transposase |
| C6H39_RS30320 () | 45781..46393 | - | 613 | Protein_57 | LysE family transporter | - |
| C6H39_RS30325 () | 46569..47549 | - | 981 | WP_010207043.1 | IS5 family transposase ISPsy2 | Transposase |
| C6H39_RS30330 () | 47636..48739 | - | 1104 | WP_004663854.1 | IS5 family transposase ISPsy19 | Transposase |
| C6H39_RS30335 () | 48889..49866 | + | 978 | WP_010213957.1 | IS5 family transposase IS52 | Transposase |
| C6H39_RS30340 () | 50001..50629 | - | 629 | Protein_61 | alanyl-tRNA editing protein | - |
| C6H39_RS30345 () | 50635..51339 | - | 705 | WP_161937987.1 | Thioesterase PikA5 | VF |
| C6H39_RS30350 () | 51406..51828 | - | 423 | WP_004666824.1 | hypothetical protein | - |
| C6H39_RS30355 () | 51838..52767 | - | 930 | WP_004666823.1 | chlorinating enzyme | - |
| C6H39_RS30360 () | 52754..54541 | - | 1788 | WP_010204585.1 | L-allo-isoleucine:holo-[CmaA peptidyl-carrier protein] ligase | - |
| C6H39_RS30365 () | 54538..55386 | - | 849 | WP_005734270.1 | alpha/beta fold hydrolase | - |
| C6H39_RS30370 () | 55397..55627 | - | 231 | WP_010204582.1 | hypothetical protein | VF |
| C6H39_RS30375 () | 55829..56171 | + | 343 | Protein_68 | response regulator transcription factor | - |
| C6H39_RS30380 () | 56171..57751 | - | 1581 | WP_010207047.1 | HAMP domain-containing histidine kinase | - |
| C6H39_RS30385 () | 57748..58344 | - | 597 | WP_004666817.1 | response regulator transcription factor | - |
| C6H39_RS30390 () | 58526..59506 | - | 981 | WP_010207043.1 | IS5 family transposase ISPsy2 | Transposase |
| C6H39_RS30395 () | 59619..60362 | - | 744 | WP_004666814.1 | Thioesterase PikA5 | VF |
| C6H39_RS30400 () | 60418..61623 | - | 1206 | WP_010207037.1 | crotonyl-CoA carboxylase/reductase | - |
| C6H39_RS30405 () | 61673..62116 | - | 444 | WP_004666812.1 | PaaI family thioesterase | - |
| C6H39_RS30410 () | 62113..68313 | - | 6201 | WP_057431271.1 | Narbonolide/10-deoxymethynolide synthase PikA1, modules 1 and 2 | VF |
| C6H39_RS30415 () | 68319..76342 | - | 8024 | Protein_76 | Narbonolide/10-deoxymethynolide synthase PikA2, modules 3 and 4 | VF |
| C6H39_RS30420 () | 76374..77792 | - | 1419 | WP_010207030.1 | acyl--CoA ligase | - |
| C6H39_RS30425 () | 77789..78322 | - | 534 | WP_004666808.1 | hypothetical protein | - |
| C6H39_RS30430 () | 78319..79464 | - | 1146 | WP_020313334.1 | beta-ketoacyl-[acyl-carrier-protein] synthase family protein | - |
| C6H39_RS30435 () | 79458..79955 | - | 498 | WP_004666806.1 | hypothetical protein | VF |
| C6H39_RS30440 () | 79967..80218 | - | 252 | WP_004666805.1 | acyl carrier protein | - |
| C6H39_RS30445 () | 80305..81834 | - | 1530 | WP_004666804.1 | acyl--CoA ligase | - |
| C6H39_RS30450 () | 82417..83394 | + | 978 | WP_010213957.1 | IS5 family transposase IS52 | Transposase |
| C6H39_RS30455 () | 83558..84061 | - | 504 | WP_020339809.1 | hypothetical protein | - |
| C6H39_RS30460 () | 84152..85225 | + | 1074 | WP_007247680.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H39_RS30465 () | 85376..85606 | + | 231 | WP_004668066.1 | carbon storage regulator | - |
| C6H39_RS30470 () | 85629..86045 | + | 417 | WP_054090699.1 | TraR/DksA family transcriptional regulator | - |
| C6H39_RS30475 () | 86080..86310 | + | 231 | WP_054090700.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|