Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 37342..37789 | Replicon | plasmid PP3 |
Accession | NZ_LT963412 | ||
Organism | Pseudomonas syringae isolate CFBP3840 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A3M4C5F0 |
Locus tag | C6H39_RS30250 | Protein ID | WP_003348606.1 |
Coordinates | 37342..37614 (-) | Length | 91 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A3M4C5H0 |
Locus tag | C6H39_RS30255 | Protein ID | WP_005730485.1 |
Coordinates | 37604..37789 (-) | Length | 62 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C6H39_RS30210 | 32788..33069 | - | 282 | WP_015062535.1 | hypothetical protein | - |
C6H39_RS31675 | 33139..33294 | + | 156 | WP_158662094.1 | hypothetical protein | - |
C6H39_RS30215 | 33297..33524 | + | 228 | WP_004642455.1 | hypothetical protein | - |
C6H39_RS30220 | 33600..34175 | - | 576 | WP_060402810.1 | recombinase family protein | - |
C6H39_RS30225 | 34720..35541 | + | 822 | WP_005735297.1 | C58 family peptidase | - |
C6H39_RS30230 | 35580..35768 | + | 189 | Protein_39 | helix-turn-helix domain-containing protein | - |
C6H39_RS32210 | 35772..35984 | + | 213 | Protein_40 | DUF4158 domain-containing protein | - |
C6H39_RS30240 | 35982..36313 | + | 332 | Protein_41 | Tn3 family transposase | - |
C6H39_RS30245 | 36418..37131 | - | 714 | WP_053479514.1 | UPF0149 family protein | - |
C6H39_RS30250 | 37342..37614 | - | 273 | WP_003348606.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C6H39_RS30255 | 37604..37789 | - | 186 | WP_005730485.1 | hypothetical protein | Antitoxin |
C6H39_RS30260 | 37840..38118 | - | 279 | WP_053479513.1 | hypothetical protein | - |
C6H39_RS30265 | 38211..38846 | - | 636 | WP_054068142.1 | recombinase family protein | - |
C6H39_RS30275 | 39379..39741 | - | 363 | WP_005730278.1 | hypothetical protein | - |
C6H39_RS30280 | 39732..40413 | - | 682 | Protein_48 | AAA family ATPase | - |
C6H39_RS30285 | 40725..41213 | + | 489 | WP_024421281.1 | hypothetical protein | - |
C6H39_RS30290 | 41398..41673 | + | 276 | Protein_50 | transposase | - |
C6H39_RS30295 | 42034..42306 | - | 273 | WP_057430853.1 | hypothetical protein | - |
C6H39_RS32215 | 42403..42597 | - | 195 | Protein_52 | helix-turn-helix domain-containing protein | - |
C6H39_RS32220 | 42622..42720 | - | 99 | Protein_53 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..86369 | 86369 | |
- | flank | IS/Tn | - | - | 31578..32786 | 1208 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3M4C5F0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A3M4C5H0 |