MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 108842 bp
Accession: NZ_LT963405 Location: 1..108842 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP3
Accession: NZ_LT963405 Location: 1..108842 Organism: Pseudomonas syringae pv. avii isolate CFBP3846 Replicon: plasmid PP3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H38_RS30350 () | 321..647 | - | 327 | WP_003319696.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| C6H38_RS30355 () | 644..868 | - | 225 | WP_015060676.1 | antitoxin MazE family protein | Antitoxin Detail |
| C6H38_RS30360 () | 1114..1749 | + | 636 | WP_060402215.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H38_RS30370 () | 2921..3289 | + | 369 | WP_003348806.1 | hypothetical protein | - |
| C6H38_RS30375 () | 3351..4013 | - | 663 | Protein_5 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C6H38_RS30380 () | 4085..4738 | - | 654 | WP_044311043.1 | type III effector HopAZ1 | - |
| C6H38_RS30390 () | 5835..6788 | + | 954 | Protein_8 | IS630 family transposase ISPsy1 | Transposase |
| C6H38_RS30395 () | 6875..7897 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30400 () | 7894..8703 | + | 810 | WP_104698139.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30405 () | 8748..8876 | + | 129 | Protein_11 | IS630 family transposase | - |
| C6H38_RS30410 () | 9090..9764 | + | 675 | WP_044310922.1 | TetR/AcrR family transcriptional regulator | - |
| C6H38_RS30415 () | 9751..10107 | + | 357 | WP_052810475.1 | DoxX family protein | - |
| C6H38_RS30420 () | 10370..11291 | - | 922 | Protein_14 | Crotonyl-CoA reductase | VF |
| C6H38_RS30425 () | 11357..12507 | + | 1151 | WP_099160136.1 | IS3 family transposase ISPpu22 | Transposase |
| C6H38_RS30435 () | 12801..13124 | + | 324 | WP_060402122.1 | hypothetical protein | - |
| C6H38_RS30440 () | 13499..15547 | - | 2049 | WP_080439451.1 | S9 family peptidase | - |
| C6H38_RS30445 () | 15760..16692 | - | 933 | WP_060413761.1 | IS5 family transposase ISPssy | Transposase |
| C6H38_RS30450 () | 17044..17493 | + | 450 | WP_032634065.1 | HIT domain-containing protein | - |
| C6H38_RS30455 () | 17577..17846 | + | 270 | WP_080336774.1 | hypothetical protein | - |
| C6H38_RS30460 () | 17945..18748 | - | 804 | Protein_21 | IS630 family transposase ISPsy25 | Transposase |
| C6H38_RS30465 () | 18844..19227 | + | 384 | Protein_22 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30470 () | 19276..20085 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30475 () | 20082..21104 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30480 () | 21615..22436 | + | 822 | WP_005735297.1 | C58 family peptidase | - |
| C6H38_RS30490 () | 23280..24437 | + | 1158 | Protein_26 | hypothetical protein | - |
| C6H38_RS32775 () | 24818..24955 | + | 138 | WP_164989721.1 | hypothetical protein | - |
| C6H38_RS30500 () | 25095..25523 | + | 429 | WP_060402544.1 | GntR family transcriptional regulator | - |
| C6H38_RS30510 () | 25877..26779 | + | 903 | WP_099160141.1 | hypothetical protein | - |
| C6H38_RS30515 () | 26796..27023 | + | 228 | WP_004666670.1 | hypothetical protein | - |
| C6H38_RS30520 () | 27421..28734 | + | 1314 | WP_103724615.1 | replication initiation protein | - |
| C6H38_RS30525 () | 28894..29358 | + | 465 | WP_060402276.1 | hypothetical protein | - |
| C6H38_RS30530 () | 29346..29576 | + | 231 | WP_024421120.1 | hypothetical protein | - |
| C6H38_RS30535 () | 29666..30205 | + | 540 | WP_057442572.1 | hypothetical protein | - |
| C6H38_RS30540 () | 30281..30886 | - | 606 | WP_005759898.1 | hypothetical protein | - |
| C6H38_RS32780 () | 30886..31059 | - | 174 | WP_005759896.1 | hypothetical protein | - |
| C6H38_RS30545 () | 31242..31433 | - | 192 | WP_010208571.1 | hypothetical protein | - |
| C6H38_RS30550 () | 31433..31642 | - | 210 | WP_060412430.1 | helix-turn-helix domain-containing protein | - |
| C6H38_RS30560 () | 31818..33050 | - | 1233 | WP_104698134.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS32855 () | 33147..33863 | + | 717 | Protein_40 | relaxase | - |
| C6H38_RS30565 () | 33864..34970 | + | 1107 | Protein_41 | relaxase | - |
| C6H38_RS30570 () | 35096..35524 | + | 429 | WP_060409988.1 | GntR family transcriptional regulator | - |
| C6H38_RS30575 () | 35934..37247 | + | 1314 | WP_060414204.1 | replication initiation protein | - |
| C6H38_RS30580 () | 37472..37765 | + | 294 | WP_060412109.1 | HU family DNA-binding protein | - |
| C6H38_RS30595 () | 38201..41227 | - | 3027 | WP_104698140.1 | Tn3 family transposase TnpA_ISPsy30 | Transposase |
| C6H38_RS30600 () | 41217..41630 | - | 414 | Protein_46 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| C6H38_RS32330 () | 42876..43544 | - | 669 | WP_060413323.1 | restriction endonuclease | - |
| C6H38_RS30610 () | 43926..45299 | + | 1374 | WP_060413324.1 | hypothetical protein | - |
| C6H38_RS30615 () | 45326..46723 | - | 1398 | Protein_50 | Methyl-accepting chemotaxis protein McpQ | VF |
| C6H38_RS30620 () | 46950..47411 | + | 462 | Protein_51 | IS21 family transposase ISAri1 | Transposase |
| C6H38_RS30625 () | 47460..48582 | - | 1123 | Protein_52 | IS21 family transposase ISPpu27 | Transposase |
| C6H38_RS30630 () | 49185..49883 | - | 699 | WP_104698141.1 | RES family NAD+ phosphorylase | - |
| C6H38_RS30635 () | 49877..50278 | - | 402 | WP_057415300.1 | hypothetical protein | - |
| C6H38_RS30640 () | 50441..50713 | - | 273 | WP_057415299.1 | hypothetical protein | - |
| C6H38_RS30645 () | 50807..51442 | - | 636 | WP_060413583.1 | recombinase family protein | - |
| C6H38_RS30650 () | 51449..54415 | - | 2967 | WP_060402558.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| C6H38_RS30655 () | 54419..54979 | - | 561 | WP_005737570.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| C6H38_RS30670 () | 55725..56957 | - | 1233 | WP_104698134.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30680 () | 57233..57898 | + | 666 | WP_032641726.1 | hypothetical protein | - |
| C6H38_RS32335 () | 58054..58218 | + | 165 | WP_004666862.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| C6H38_RS30690 () | 58574..58897 | + | 324 | WP_003425054.1 | DUF190 domain-containing protein | - |
| C6H38_RS30695 () | 59139..60453 | + | 1315 | Protein_63 | voltage-gated chloride channel family protein | - |
| C6H38_RS30705 () | 60949..61272 | + | 324 | WP_003425060.1 | DUF190 domain-containing protein | - |
| C6H38_RS30710 () | 61315..61581 | + | 267 | WP_003317536.1 | hypothetical protein | - |
| C6H38_RS32605 () | 61676..62017 | + | 342 | WP_003317535.1 | hypothetical protein | - |
| C6H38_RS30720 () | 62091..63374 | + | 1284 | WP_003317534.1 | phosphopyruvate hydratase | - |
| C6H38_RS30725 () | 63490..64035 | + | 546 | WP_003317533.1 | inorganic diphosphatase | - |
| C6H38_RS30730 () | 64035..64637 | + | 603 | WP_003317532.1 | uracil-DNA glycosylase | - |
| C6H38_RS30735 () | 64646..65815 | - | 1170 | WP_010428856.1 | TDT family transporter | - |
| C6H38_RS30740 () | 65933..66829 | + | 897 | WP_003317531.1 | LysR family transcriptional regulator | - |
| C6H38_RS30745 () | 66987..67979 | + | 993 | WP_003317529.1 | YncE family protein | - |
| C6H38_RS30750 () | 68309..68689 | + | 381 | WP_003317528.1 | hypothetical protein | - |
| C6H38_RS30760 () | 69404..70366 | - | 963 | WP_060413825.1 | tyrosine-type recombinase/integrase | - |
| C6H38_RS30765 () | 70691..70939 | + | 249 | WP_005618754.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| C6H38_RS30770 () | 70952..71302 | + | 351 | WP_058398778.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H38_RS30775 () | 71433..72206 | - | 774 | WP_058398777.1 | Oxygen regulatory protein NreC | VF |
| C6H38_RS30780 () | 72315..72716 | + | 402 | Protein_78 | polyamine ABC transporter substrate-binding protein | - |
| C6H38_RS30785 () | 72765..73574 | - | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30790 () | 73571..74593 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30795 () | 74746..74940 | - | 195 | WP_054086142.1 | hypothetical protein | - |
| C6H38_RS30800 () | 74937..75227 | - | 291 | WP_046835519.1 | hypothetical protein | - |
| C6H38_RS30805 () | 75301..75666 | - | 366 | WP_054999222.1 | hypothetical protein | - |
| C6H38_RS30810 () | 75651..76043 | - | 393 | WP_060414197.1 | hypothetical protein | - |
| C6H38_RS30815 () | 76057..77109 | - | 1053 | WP_060414198.1 | Type IV secretion system protein VirB11 | VF |
| C6H38_RS30820 () | 77119..78498 | - | 1380 | WP_060414199.1 | Type IV secretion system protein virB10 | VF |
| C6H38_RS30825 () | 78485..79294 | - | 810 | WP_057433468.1 | P-type conjugative transfer protein VirB9 | - |
| C6H38_RS30830 () | 79284..80072 | - | 789 | WP_060414200.1 | type IV secretion system protein | - |
| C6H38_RS30835 () | 80109..80414 | - | 306 | WP_080439482.1 | conjugal transfer protein | - |
| C6H38_RS30840 () | 80482..81414 | - | 933 | WP_053480218.1 | type IV secretion system protein | - |
| C6H38_RS30845 () | 81425..81778 | - | 354 | WP_053480219.1 | hypothetical protein | - |
| C6H38_RS30850 () | 81811..82497 | - | 687 | WP_053480220.1 | P-type DNA transfer protein VirB5 | - |
| C6H38_RS30855 () | 82494..85046 | - | 2553 | WP_174171212.1 | conjugal transfer protein | - |
| C6H38_RS30860 () | 84982..85383 | - | 402 | Protein_94 | VirB3 family type IV secretion system protein | - |
| C6H38_RS30865 () | 85396..85731 | - | 336 | WP_053480986.1 | hypothetical protein | - |
| C6H38_RS30870 () | 85731..86438 | - | 708 | WP_099265512.1 | Type IV secretion system protein virB1 | VF |
| C6H38_RS30875 () | 86829..87476 | - | 648 | WP_019740455.1 | XRE family transcriptional regulator | - |
| C6H38_RS30885 () | 87978..88607 | + | 630 | WP_024421519.1 | Sporulation initiation inhibitor protein Soj | VF |
| C6H38_RS30890 () | 88604..88834 | + | 231 | WP_019742104.1 | hypothetical protein | - |
| C6H38_RS30895 () | 88888..89397 | - | 510 | WP_019742103.1 | GNAT family N-acetyltransferase | - |
| C6H38_RS30900 () | 89394..89675 | - | 282 | WP_019742102.1 | DUF1778 domain-containing protein | - |
| C6H38_RS30910 () | 89959..90594 | + | 636 | WP_065348699.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H38_RS30915 () | 90687..90872 | + | 186 | Protein_103 | arylsulfatase regulator | - |
| C6H38_RS30920 () | 90959..91981 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30925 () | 91978..92787 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H38_RS30930 () | 92835..92927 | + | 93 | Protein_106 | arylsulfatase regulator | - |
| C6H38_RS30935 () | 93141..93824 | + | 684 | WP_080439508.1 | Mobilization protein A | Relaxase |
| C6H38_RS30940 () | 93790..94179 | + | 390 | Protein_108 | IS5 family transposase IS52 | Transposase |
| C6H38_RS30950 () | 94548..95621 | + | 1074 | WP_099160138.1 | IS630 family transposase ISPsy1 | Transposase |
| C6H38_RS30965 () | 96528..97760 | + | 1233 | WP_104698134.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS32340 () | 98035..98316 | + | 282 | WP_060402147.1 | hypothetical protein | - |
| C6H38_RS30980 () | 98297..99526 | + | 1230 | WP_015062536.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS30995 () | 100543..101049 | - | 507 | Protein_113 | DNA polymerase V subunit UmuC | - |
| C6H38_RS31000 () | 101093..102541 | - | 1449 | WP_005622074.1 | FAD-binding oxidoreductase | - |
| C6H38_RS31005 () | 102580..103545 | - | 966 | WP_024420007.1 | isopenicillin N synthase family oxygenase | - |
| C6H38_RS31010 () | 103757..104030 | - | 274 | Protein_116 | IS21 family transposase ISPst3 | Transposase |
| C6H38_RS31015 () | 104174..104683 | - | 510 | WP_005735414.1 | peptide deformylase | - |
| C6H38_RS31025 () | 104971..106200 | - | 1230 | WP_104698143.1 | IS91 family transposase IS801 | Transposase |
| C6H38_RS31035 () | 106934..107914 | + | 981 | WP_060402216.1 | IS5 family transposase ISPa41 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|