MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 81323 bp
Accession: NZ_LT963398 Location: 1..81323 Organism: Pseudomonas cerasi isolate PL963 Replicon: plasmid PP3
Accession: NZ_LT963398 Location: 1..81323 Organism: Pseudomonas cerasi isolate PL963 Replicon: plasmid PP3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6H34_RS28810 () | 220..1242 | - | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS28815 () | 1395..1649 | + | 255 | WP_054098585.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| C6H34_RS28820 () | 1646..1993 | + | 348 | WP_054098586.1 | type II toxin-antitoxin system ChpB family toxin | - |
| C6H34_RS28825 () | 2039..2293 | + | 255 | WP_057411422.1 | hypothetical protein | - |
| C6H34_RS28830 () | 2320..2556 | + | 237 | WP_054098588.1 | hypothetical protein | - |
| C6H34_RS28835 () | 2659..2871 | + | 213 | WP_060402979.1 | hypothetical protein | - |
| C6H34_RS30880 () | 2903..3397 | + | 495 | WP_157893875.1 | hypothetical protein | - |
| C6H34_RS28850 () | 3485..4714 | + | 1230 | WP_065348575.1 | IS91 family transposase IS801 | Transposase |
| C6H34_RS28860 () | 4896..5024 | - | 129 | Protein_9 | IS256 family transposase ISPsy17 | Transposase |
| C6H34_RS28865 () | 5096..6670 | - | 1575 | WP_065348574.1 | diguanylate cyclase | - |
| C6H34_RS28870 () | 7109..7894 | - | 786 | Protein_11 | IS66 family transposase ISPsy43 | VF |
| C6H34_RS28875 () | 8418..8732 | + | 315 | WP_065348583.1 | hypothetical protein | - |
| C6H34_RS28880 () | 8758..9720 | - | 963 | WP_065348573.1 | IS91 family transposase ISTha3 | Transposase |
| C6H34_RS28885 () | 10052..10300 | + | 249 | WP_011152898.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| C6H34_RS28890 () | 10313..10663 | + | 351 | WP_065348564.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C6H34_RS28895 () | 10770..11174 | - | 405 | WP_065348582.1 | DUF4279 domain-containing protein | - |
| C6H34_RS30885 () | 11372..11779 | - | 408 | WP_065348563.1 | hypothetical protein | - |
| C6H34_RS28900 () | 11776..14541 | - | 2766 | WP_065348562.1 | RHS repeat-associated core domain-containing protein | - |
| C6H34_RS28905 () | 14538..16058 | - | 1521 | WP_083188265.1 | RHS repeat protein | - |
| C6H34_RS28910 () | 16539..16817 | + | 279 | Protein_20 | nucleotide-binding protein | - |
| C6H34_RS28920 () | 17182..18159 | + | 978 | WP_065348561.1 | IS5 family transposase ISPssy | Transposase |
| C6H34_RS28925 () | 18617..19281 | + | 665 | Protein_22 | Mobilization protein A | Relaxase |
| C6H34_RS28930 () | 19278..19805 | - | 528 | WP_003348567.1 | hypothetical protein | - |
| C6H34_RS28935 () | 19945..20238 | - | 294 | WP_003348565.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H34_RS28945 () | 20510..20803 | - | 294 | WP_003348560.1 | HU family DNA-binding protein | - |
| C6H34_RS28950 () | 21029..22342 | - | 1314 | WP_065348560.1 | replication initiation protein | - |
| C6H34_RS28955 () | 22753..23181 | - | 429 | WP_024420281.1 | GntR family transcriptional regulator | - |
| C6H34_RS28960 () | 23259..23519 | - | 261 | Protein_28 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H34_RS30890 () | 23553..23717 | - | 165 | WP_004666862.1 | hypothetical protein | - |
| C6H34_RS28965 () | 23873..24538 | - | 666 | WP_065348558.1 | type III effector AvrRps4 | - |
| C6H34_RS28975 () | 25151..27358 | - | 2208 | WP_065348557.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C6H34_RS28980 () | 27345..28430 | - | 1086 | WP_065348556.1 | thioredoxin fold domain-containing protein | - |
| C6H34_RS28985 () | 28522..28722 | + | 201 | WP_020309477.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| C6H34_RS28990 () | 28719..29096 | + | 378 | WP_065348555.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| C6H34_RS28995 () | 29086..30288 | - | 1203 | WP_020325421.1 | hypothetical protein | - |
| C6H34_RS29000 () | 30380..31030 | - | 651 | WP_065348554.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C6H34_RS29005 () | 31027..31272 | - | 246 | WP_003344389.1 | hypothetical protein | - |
| C6H34_RS29010 () | 31375..33519 | - | 2145 | WP_065348553.1 | DotA/TraY family protein | - |
| C6H34_RS29015 () | 33550..34152 | - | 603 | WP_058886769.1 | conjugal transfer protein TraX | - |
| C6H34_RS29020 () | 34142..35356 | - | 1215 | WP_002556016.1 | conjugal transfer protein TraW | - |
| C6H34_RS29025 () | 35368..35757 | - | 390 | WP_005740376.1 | hypothetical protein | - |
| C6H34_RS29030 () | 35779..36015 | - | 237 | WP_005740377.1 | hypothetical protein | - |
| C6H34_RS29035 () | 36039..39098 | - | 3060 | Protein_43 | ATP-binding protein | - |
| C6H34_RS29040 () | 39073..39654 | - | 582 | WP_104685823.1 | conjugal transfer protein TraT | - |
| C6H34_RS29045 () | 39918..40118 | + | 201 | WP_002556012.1 | hypothetical protein | - |
| C6H34_RS29050 () | 40096..40371 | + | 276 | WP_054072925.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C6H34_RS29055 () | 40415..40810 | - | 396 | WP_005740383.1 | hypothetical protein | - |
| C6H34_RS29060 () | 40886..41428 | - | 543 | WP_065348550.1 | conjugal transfer protein TraQ | - |
| C6H34_RS29065 () | 41437..42150 | - | 714 | WP_065348549.1 | conjugal transfer protein TraP | - |
| C6H34_RS29070 () | 42147..43505 | - | 1359 | WP_065348548.1 | conjugal transfer protein TraO | - |
| C6H34_RS29075 () | 43511..44570 | - | 1060 | Protein_51 | hypothetical protein | VF |
| C6H34_RS29080 () | 44614..45318 | - | 705 | WP_065348546.1 | DotI/IcmL/TraM family protein | - |
| C6H34_RS29085 () | 45315..45668 | - | 354 | WP_010214729.1 | hypothetical protein | - |
| C6H34_RS29090 () | 45694..50175 | - | 4482 | WP_065348580.1 | DNA primase | - |
| C6H34_RS29095 () | 50179..50460 | - | 282 | WP_010208375.1 | IcmT/TraK family protein | - |
| C6H34_RS29100 () | 50489..50734 | - | 246 | WP_004666892.1 | hypothetical protein | - |
| C6H34_RS29105 () | 50771..51268 | - | 498 | WP_054998780.1 | Cardiolipin synthase B | VF |
| C6H34_RS29110 () | 51348..51596 | - | 249 | WP_053486299.1 | hypothetical protein | - |
| C6H34_RS29115 () | 51745..52977 | + | 1233 | WP_083188273.1 | IS91 family transposase IS801 | Transposase |
| C6H34_RS29135 () | 54500..54829 | + | 330 | WP_003381772.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C6H34_RS29140 () | 54756..55040 | + | 285 | WP_083188269.1 | type II toxin-antitoxin system YafQ family toxin | - |
| C6H34_RS29145 () | 55095..56117 | + | 1023 | WP_002551322.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS29150 () | 56114..56923 | + | 810 | WP_005741073.1 | IS21 family transposase ISPsy4 | Transposase |
| C6H34_RS29160 () | 57431..58051 | + | 621 | WP_065348714.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H34_RS29165 () | 58077..58373 | - | 297 | WP_057446100.1 | hypothetical protein | - |
| C6H34_RS29170 () | 58384..58605 | - | 222 | WP_057446101.1 | hypothetical protein | - |
| C6H34_RS29175 () | 58640..59056 | - | 417 | WP_065348715.1 | TraR/DksA family transcriptional regulator | - |
| C6H34_RS29180 () | 59092..59316 | - | 225 | WP_024421145.1 | carbon storage regulator | - |
| C6H34_RS29185 () | 59449..59952 | + | 504 | WP_020339809.1 | hypothetical protein | - |
| C6H34_RS29190 () | 60140..60385 | - | 246 | WP_065348716.1 | hypothetical protein | - |
| C6H34_RS29200 () | 61482..62468 | + | 987 | WP_044310862.1 | hypothetical protein | - |
| C6H34_RS29210 () | 63481..63768 | - | 288 | WP_019740373.1 | hypothetical protein | - |
| C6H34_RS29215 () | 63765..64403 | - | 639 | WP_019740374.1 | ParA family protein | - |
| C6H34_RS29220 () | 64831..65622 | - | 792 | Protein_74 | IS91 family transposase IS801 | Transposase |
| C6H34_RS29225 () | 65680..66360 | - | 681 | WP_157893879.1 | hypothetical protein | - |
| C6H34_RS30900 () | 66354..66611 | - | 258 | WP_157893880.1 | hypothetical protein | - |
| C6H34_RS29235 () | 67421..67747 | - | 327 | Protein_77 | hypothetical protein | - |
| C6H34_RS29240 () | 67752..68396 | - | 645 | Protein_78 | type IA DNA topoisomerase | - |
| C6H34_RS29245 () | 68395..68583 | - | 189 | Protein_79 | transglycosylase SLT domain-containing protein | - |
| C6H34_RS29250 () | 68933..69163 | - | 231 | WP_053486254.1 | helix-turn-helix domain-containing protein | - |
| C6H34_RS29255 () | 69251..69916 | + | 666 | WP_024668590.1 | LexA family transcriptional regulator | - |
| C6H34_RS29265 () | 70187..70651 | - | 465 | WP_065348720.1 | hypothetical protein | - |
| C6H34_RS29270 () | 71094..71348 | - | 255 | WP_003381801.1 | hypothetical protein | - |
| C6H34_RS29275 () | 71384..72016 | - | 633 | WP_003381804.1 | ParA family protein | - |
| C6H34_RS29280 () | 72315..72956 | + | 642 | WP_065348659.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| C6H34_RS29285 () | 73104..74099 | + | 996 | WP_065348660.1 | hypothetical protein | - |
| C6H34_RS29290 () | 74103..75134 | + | 1032 | WP_044394051.1 | hypothetical protein | - |
| C6H34_RS29295 () | 76272..77648 | + | 1377 | WP_065348661.1 | multidrug transporter MatE | - |
| C6H34_RS29300 () | 77731..78918 | + | 1188 | WP_065348662.1 | AMP-binding protein | - |
| C6H34_RS29305 () | 79174..79446 | - | 273 | WP_080439281.1 | integrase | - |
| C6H34_RS29310 () | 79403..79720 | + | 318 | Protein_91 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| C6H34_RS29315 () | 79811..80687 | + | 877 | Protein_92 | IS3 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|