MGE detailed information
MGE type: Prophage MGE length: 45867 bp
Accession: NZ_LT906474 Location: 2248614..2294480 Organism: Escherichia coli strain NCTC122 Replicon: chromosome
Accession: NZ_LT906474 Location: 2248614..2294480 Organism: Escherichia coli strain NCTC122 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV98_RS11360 () | 2244513..2245733 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| CKV98_RS11365 () | 2245858..2246553 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CKV98_RS11370 () | 2246506..2247798 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CKV98_RS11375 () | 2247957..2248571 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CKV98_RS11380 () | 2248614..2249468 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| CKV98_RS11385 () | 2249470..2250087 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CKV98_RS11390 () | 2250098..2252521 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| CKV98_RS11395 () | 2252582..2255008 | - | 2427 | WP_000041675.1 | dimethyl sulfoxide reductase subunit A | - |
| CKV98_RS11400 () | 2255207..2255512 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| CKV98_RS11405 () | 2255620..2256330 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CKV98_RS11410 () | 2256333..2256893 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CKV98_RS11415 () | 2256928..2257269 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| CKV98_RS11420 () | 2257404..2257730 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| CKV98_RS11430 () | 2257936..2259150 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CKV98_RS11435 () | 2259162..2260181 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| CKV98_RS11440 () | 2260239..2260367 | + | 129 | WP_001389342.1 | hypothetical protein | - |
| CKV98_RS11445 () | 2260369..2261649 | - | 1281 | WP_000876986.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CKV98_RS11450 () | 2261684..2261935 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CKV98_RS11455 () | 2262008..2264479 | - | 2472 | WP_081508834.1 | exonuclease | - |
| CKV98_RS11460 () | 2264572..2264763 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| CKV98_RS11465 () | 2264760..2264948 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| CKV98_RS11475 () | 2265516..2265734 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| CKV98_RS11485 () | 2265894..2266049 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| CKV98_RS11490 () | 2266216..2266623 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| CKV98_RS11495 () | 2266707..2266937 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| CKV98_RS11500 () | 2266921..2267343 | + | 423 | Protein_2113 | hypothetical protein | - |
| CKV98_RS23825 () | 2267561..2267848 | + | 288 | Protein_2114 | hypothetical protein | - |
| CKV98_RS11530 () | 2269842..2271155 | + | 1314 | WP_000589005.1 | ISNCY family transposase ISCARN112 | Transposase |
| CKV98_RS11535 () | 2271592..2271924 | - | 333 | WP_001301033.1 | protein FlxA | - |
| CKV98_RS11540 () | 2272127..2272432 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| CKV98_RS11545 () | 2272457..2272696 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CKV98_RS11550 () | 2272696..2272983 | + | 288 | WP_047402633.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CKV98_RS11555 () | 2273055..2273210 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CKV98_RS11560 () | 2273427..2273678 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| CKV98_RS11565 () | 2273745..2274023 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CKV98_RS11570 () | 2274025..2275074 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| CKV98_RS11575 () | 2275088..2275840 | + | 753 | WP_001047135.1 | antitermination protein | - |
| CKV98_RS23595 () | 2276118..2276207 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| CKV98_RS11580 () | 2276262..2276474 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| CKV98_RS11585 () | 2276775..2276990 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CKV98_RS23920 () | 2277354..2277524 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| CKV98_RS11590 () | 2277744..2277959 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CKV98_RS11595 () | 2277964..2278275 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| CKV98_RS11600 () | 2278272..2278805 | + | 534 | WP_047402632.1 | lysozyme | - |
| CKV98_RS11605 () | 2278802..2279299 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| CKV98_RS11610 () | 2279662..2279874 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CKV98_RS11615 () | 2279885..2280073 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| CKV98_RS23600 () | 2280076..2280141 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| CKV98_RS11620 () | 2280221..2280376 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| CKV98_RS11625 () | 2280548..2280721 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| CKV98_RS11630 () | 2280873..2281283 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| CKV98_RS11635 () | 2281341..2281514 | - | 174 | WP_001301001.1 | YlcI/YnfO family protein | - |
| CKV98_RS11640 () | 2281513..2282475 | + | 963 | WP_081508886.1 | phage tail protein | - |
| CKV98_RS11645 () | 2282475..2283050 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| CKV98_RS11650 () | 2283148..2283738 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CKV98_RS11655 () | 2284055..2284288 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CKV98_RS23605 () | 2284357..2284470 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| CKV98_RS11660 () | 2284991..2286358 | + | 1368 | Protein_2146 | MHS family MFS transporter | - |
| CKV98_RS11665 () | 2286447..2287907 | + | 1461 | WP_000527809.1 | mannitol dehydrogenase family protein | - |
| CKV98_RS11670 () | 2287942..2288145 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CKV98_RS11675 () | 2288322..2289008 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CKV98_RS11680 () | 2289097..2289843 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| CKV98_RS11690 () | 2289980..2292025 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| CKV98_RS11695 () | 2292069..2292587 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| CKV98_RS11700 () | 2292898..2294018 | + | 1121 | WP_085950818.1 | IS3 family transposase ISSen4 | Transposase |
| CKV98_RS11705 () | 2294088..2294480 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| CKV98_RS11710 () | 2294735..2295625 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| CKV98_RS23925 () | 2295740..2295844 | - | 105 | WP_211180496.1 | protein MgtT | - |
| CKV98_RS11715 () | 2295844..2295939 | - | 96 | WP_000901367.1 | protein MgtS | - |
| CKV98_RS11720 () | 2296066..2297253 | - | 1188 | Protein_2158 | efflux MFS transporter YdeE | - |
| CKV98_RS11725 () | 2297448..2298347 | + | 900 | WP_000087214.1 | O-acetylserine/cysteine exporter | - |
| CKV98_RS11730 () | 2298378..2298596 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| CKV98_RS11735 () | 2298628..2299011 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| CKV98_RS11740 () | 2299031..2299465 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.003 |