MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 27106 bp
Accession: NZ_LT853884 Location: 1..27106 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-27
Accession: NZ_LT853884 Location: 1..27106 Organism: Xanthomonas fragariae strain PD885 Replicon: plasmid pPD885-27
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PD885_RS20030 () | 1..1416 | + | 1416 | Protein_0 | replication protein | - |
| PD885_RS20035 () | 1682..1946 | + | 265 | Protein_1 | hypothetical protein | - |
| PD885_RS20040 () | 2567..3637 | - | 1071 | WP_088057146.1 | Type IV secretion system protein VirB6 | VF |
| PD885_RS20045 () | 3661..3906 | - | 246 | WP_088057147.1 | hypothetical protein | VF |
| PD885_RS20050 () | 3903..4343 | - | 441 | WP_088057148.1 | hypothetical protein | - |
| PD885_RS20055 () | 4353..5063 | - | 711 | WP_088057149.1 | Type IV secretion system protein virB5 | VF |
| PD885_RS20060 () | 5422..5874 | - | 453 | WP_088057150.1 | hypothetical protein | - |
| PD885_RS20065 () | 5877..6605 | - | 729 | WP_088057151.1 | hypothetical protein | - |
| PD885_RS20070 () | 6616..6990 | - | 375 | WP_159091986.1 | hypothetical protein | - |
| PD885_RS20075 () | 7457..7819 | + | 363 | WP_088057153.1 | hypothetical protein | Relaxase |
| PD885_RS20080 () | 7809..10175 | + | 2367 | WP_108862514.1 | hypothetical protein | - |
| PD885_RS20085 () | 10335..10553 | + | 219 | WP_088057162.1 | chromosome partitioning protein ParB | - |
| PD885_RS20090 () | 10653..11012 | + | 360 | WP_088057155.1 | hypothetical protein | - |
| PD885_RS20095 () | 11258..11671 | - | 414 | WP_088057156.1 | hypothetical protein | - |
| PD885_RS20100 () | 11747..12040 | - | 294 | WP_088057157.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD885_RS20105 () | 12028..12300 | - | 273 | WP_088057158.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| PD885_RS20110 () | 12669..13067 | + | 399 | WP_108772809.1 | antitoxin VbhA family protein | - |
| PD885_RS20115 () | 13109..13672 | + | 564 | WP_108772810.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| PD885_RS20120 () | 13715..13990 | + | 276 | Protein_18 | ParA family protein | - |
| PD885_RS20125 () | 13992..14420 | - | 429 | WP_002804319.1 | DUF3757 domain-containing protein | - |
| PD885_RS21775 () | 14622..14993 | - | 372 | WP_197685833.1 | hypothetical protein | - |
| PD885_RS21780 () | 15026..15613 | + | 588 | WP_197685834.1 | hypothetical protein | - |
| PD885_RS21655 () | 15944..16513 | - | 570 | WP_172404532.1 | hypothetical protein | - |
| PD885_RS20145 () | 16628..16936 | - | 309 | WP_002804321.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PD885_RS20150 () | 16957..17421 | - | 465 | WP_002804324.1 | hypothetical protein | - |
| PD885_RS20155 () | 17587..17838 | + | 252 | WP_002804328.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| PD885_RS20160 () | 17835..18230 | + | 396 | WP_002804329.1 | type II toxin-antitoxin system VapC family toxin | - |
| PD885_RS21660 () | 18236..18651 | + | 416 | Protein_27 | hypothetical protein | - |
| PD885_RS20170 () | 18918..19319 | - | 402 | WP_002804331.1 | hypothetical protein | - |
| PD885_RS21220 () | 19371..19814 | + | 444 | WP_145954081.1 | hypothetical protein | - |
| PD885_RS21665 () | 19821..19985 | + | 165 | WP_156775378.1 | hypothetical protein | - |
| PD885_RS20175 () | 20173..20748 | + | 576 | WP_040762337.1 | Tn3 family transposase ISPsy42 | Transposase |
| PD885_RS20180 () | 20759..21025 | + | 267 | WP_002804333.1 | hypothetical protein | - |
| PD885_RS20185 () | 21160..22875 | + | 1716 | WP_083215115.1 | AAA family ATPase | - |
| PD885_RS20190 () | 22944..23126 | + | 183 | WP_134656646.1 | hypothetical protein | - |
| PD885_RS20195 () | 23312..23596 | - | 285 | WP_002804295.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PD885_RS20200 () | 23584..23862 | - | 279 | WP_002804296.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| PD885_RS20210 () | 24409..24834 | + | 426 | WP_172404533.1 | antitoxin VbhA family protein | - |
| PD885_RS20215 () | 24876..25427 | + | 552 | WP_088057164.1 | Tn3 family transposase TnpR_ISAzs17 | Transposase |
| PD885_RS20220 () | 25530..26162 | + | 633 | WP_088057159.1 | ParA family protein | - |
| PD885_RS20225 () | 26155..26517 | + | 363 | WP_088057160.1 | hypothetical protein | - |
| PD885_RS20230 () | 26600..26923 | + | 324 | WP_088057161.1 | partition protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|