MGE detailed information
MGE type: Genomic_island MGE length: 63584 bp
Accession: NZ_LS483297 Location: 3660750..3724333 Organism: Escherichia coli strain NCTC11023 Replicon: chromosome
Accession: NZ_LS483297 Location: 3660750..3724333 Organism: Escherichia coli strain NCTC11023 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM98_RS19015 () | 3655809..3656618 | - | 810 | WP_000184938.1 | 2-keto-4-pentenoate hydratase | - |
| DQM98_RS19020 () | 3656628..3657494 | - | 867 | WP_000222149.1 | alpha/beta fold hydrolase | - |
| DQM98_RS19025 () | 3657523..3658485 | - | 963 | WP_001568600.1 | 3-carboxyethylcatechol 2,3-dioxygenase | - |
| DQM98_RS19030 () | 3658487..3659869 | - | 1383 | Protein_3477 | bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | - |
| DQM98_RS19035 () | 3659872..3660468 | + | 597 | Protein_3478 | IS3 family transposase | - |
| DQM98_RS19045 () | 3660750..3661826 | + | 1077 | WP_000227970.1 | IS110 family transposase ISEc21 | Transposase |
| DQM98_RS19050 () | 3661843..3662151 | + | 309 | Protein_3480 | DDE-type integrase/transposase/recombinase | - |
| DQM98_RS19055 () | 3662049..3663347 | - | 1299 | WP_000342159.1 | IS256 family transposase ISSoEn2 | Transposase |
| DQM98_RS19065 () | 3663565..3663729 | - | 165 | Protein_3482 | transposase domain-containing protein | - |
| DQM98_RS24455 () | 3663674..3663937 | - | 264 | WP_001247776.1 | IS66 family transposase ISPpu19 | Transposase |
| DQM98_RS24460 () | 3663952..3664215 | + | 264 | WP_001295708.1 | hypothetical protein | - |
| DQM98_RS19075 () | 3664444..3664725 | + | 282 | WP_000643628.1 | helix-turn-helix domain-containing protein | - |
| DQM98_RS19080 () | 3664760..3665329 | + | 570 | WP_000350435.1 | hypothetical protein | VF |
| DQM98_RS19085 () | 3665435..3668317 | + | 2883 | WP_109866219.1 | ATP-dependent Clp protease ATP-binding subunit ClpC | VF |
| DQM98_RS19090 () | 3668317..3668508 | + | 192 | WP_073528147.1 | hypothetical protein | - |
| DQM98_RS19095 () | 3668569..3670296 | + | 1728 | WP_109866220.1 | FtsH/Yme1/Tma family ATP-dependent metallopeptidase | - |
| DQM98_RS19100 () | 3670384..3670842 | + | 459 | WP_001275372.1 | Spore protein SP21 | VF |
| DQM98_RS19105 () | 3670865..3671779 | + | 915 | WP_001022485.1 | heat resistance protein YfdX1 | - |
| DQM98_RS19110 () | 3671882..3672769 | + | 888 | WP_001005473.1 | heat resistance protein YfdX2 | - |
| DQM98_RS19115 () | 3672859..3673470 | + | 612 | WP_001090787.1 | heat resistance membrane protein HdeD-GI | - |
| DQM98_RS19120 () | 3673550..3674695 | + | 1146 | WP_001166995.1 | hypothetical protein | - |
| DQM98_RS19125 () | 3674685..3675125 | + | 441 | WP_000786817.1 | heat resistance system thioredoxin Trx-GI | - |
| DQM98_RS19130 () | 3675129..3676844 | + | 1716 | Protein_3496 | heat resistance system K+/H+ antiporter KefB-GI | - |
| DQM98_RS19135 () | 3676841..3677338 | + | 498 | WP_000843382.1 | heat resistance protein PsiE-GI | - |
| DQM98_RS19140 () | 3677316..3678281 | + | 966 | WP_021553242.1 | M48 family metalloprotease | - |
| DQM98_RS19145 () | 3678306..3679457 | + | 1152 | WP_000323729.1 | hypothetical protein | VF |
| DQM98_RS19150 () | 3679682..3680251 | - | 570 | Protein_3500 | IS5 family transposase ISPpu18 | Transposase |
| DQM98_RS19155 () | 3680247..3680941 | - | 695 | Protein_3501 | IS5 family transposase ISPpu18 | Transposase |
| DQM98_RS19160 () | 3681373..3682236 | + | 864 | WP_016154552.1 | GTPase family protein | - |
| DQM98_RS19165 () | 3682328..3683149 | + | 822 | WP_001548153.1 | DUF945 domain-containing protein | - |
| DQM98_RS19170 () | 3683366..3684067 | + | 702 | WP_021553244.1 | WYL domain-containing protein | - |
| DQM98_RS19175 () | 3684108..3684344 | + | 237 | WP_001144029.1 | hypothetical protein | - |
| DQM98_RS19180 () | 3684344..3684787 | + | 444 | WP_021553245.1 | hypothetical protein | - |
| DQM98_RS19185 () | 3684810..3685277 | + | 468 | WP_001385283.1 | hypothetical protein | - |
| DQM98_RS19190 () | 3685354..3685593 | + | 240 | Protein_3508 | DUF905 domain-containing protein | - |
| DQM98_RS19195 () | 3685691..3686149 | + | 459 | WP_000211838.1 | antirestriction protein | - |
| DQM98_RS19200 () | 3686165..3686641 | + | 477 | WP_000811693.1 | RadC family protein | - |
| DQM98_RS19205 () | 3686650..3686871 | + | 222 | WP_000691994.1 | DUF987 domain-containing protein | - |
| DQM98_RS19210 () | 3686890..3687207 | + | 318 | WP_000070396.1 | type IV toxin-antitoxin system antitoxin YafW | Antitoxin Detail |
| DQM98_RS19215 () | 3687228..3687569 | + | 342 | WP_000854680.1 | type IV toxin-antitoxin system toxin YkfI | Toxin Detail |
| DQM98_RS19220 () | 3688088..3689161 | + | 1074 | WP_057081038.1 | hypothetical protein ; Integrase | Integrase |
| DQM98_RS19225 () | 3689172..3690101 | + | 930 | WP_057081037.1 | hypothetical protein | - |
| DQM98_RS19230 () | 3690169..3690396 | - | 228 | WP_001403510.1 | hypothetical protein | - |
| DQM98_RS19235 () | 3690466..3691851 | - | 1386 | WP_057081036.1 | P-type conjugative transfer protein TrbL | - |
| DQM98_RS19240 () | 3692036..3692830 | - | 795 | WP_111732615.1 | P-type conjugative transfer protein TrbJ | - |
| DQM98_RS19245 () | 3692885..3693244 | - | 360 | Protein_3519 | conjugal transfer transcriptional regulator TraJ | - |
| DQM98_RS19250 () | 3693531..3693800 | - | 270 | WP_024202049.1 | hypothetical protein | - |
| DQM98_RS19255 () | 3694292..3694989 | + | 698 | Protein_3521 | IS1 family transposase IS1R | Transposase |
| DQM98_RS19260 () | 3695539..3695808 | + | 270 | WP_071606680.1 | HigA family addiction module antidote protein | - |
| DQM98_RS19265 () | 3695892..3696674 | - | 783 | WP_024202048.1 | TIGR02646 family protein | - |
| DQM98_RS19270 () | 3696652..3698280 | - | 1629 | WP_024202047.1 | AAA family ATPase | - |
| DQM98_RS19275 () | 3698281..3699219 | - | 939 | WP_001403504.1 | retron St85 family RNA-directed DNA polymerase | - |
| DQM98_RS19285 () | 3699861..3701114 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| DQM98_RS19290 () | 3701126..3702229 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| DQM98_RS19295 () | 3702517..3703572 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| DQM98_RS19300 () | 3703611..3704012 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| DQM98_RS19305 () | 3704070..3705314 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 3704730..3704810 | - | 81 | NuclAT_8 | - | - |
| - () | 3704730..3704810 | - | 81 | NuclAT_8 | - | - |
| - () | 3704730..3704810 | - | 81 | NuclAT_8 | - | - |
| - () | 3704730..3704810 | - | 81 | NuclAT_8 | - | - |
| DQM98_RS19310 () | 3705406..3705864 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| DQM98_RS19315 () | 3706125..3707582 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| DQM98_RS19320 () | 3707639..3708160 | - | 522 | Protein_3533 | peptide chain release factor H | - |
| DQM98_RS19325 () | 3708159..3708362 | - | 204 | Protein_3534 | RNA ligase RtcB family protein | - |
| DQM98_RS19330 () | 3708608..3709060 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| DQM98_RS19335 () | 3709070..3709468 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| DQM98_RS19340 () | 3709471..3709764 | - | 294 | WP_000554757.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| DQM98_RS19345 () | 3709816..3710871 | - | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| DQM98_RS19350 () | 3710942..3711727 | - | 786 | WP_000207587.1 | Chemotaxis protein LafU | VF |
| DQM98_RS19355 () | 3711699..3713411 | + | 1713 | Protein_3540 | Flagellar biosynthesis protein FlhA | VF |
| DQM98_RS19360 () | 3713627..3714124 | - | 498 | WP_111732616.1 | REP-associated tyrosine transposase RayT | - |
| DQM98_RS19365 () | 3714300..3715073 | - | 774 | WP_001355630.1 | hypothetical protein | VF |
| DQM98_RS19370 () | 3715259..3715519 | + | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | - |
| DQM98_RS19375 () | 3715522..3715791 | + | 270 | Protein_3544 | type II toxin-antitoxin system YafQ family toxin | - |
| DQM98_RS19380 () | 3715947..3716687 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| DQM98_RS19385 () | 3716658..3717425 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| DQM98_RS19390 () | 3717631..3718209 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| DQM98_RS19395 () | 3718449..3720893 | + | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| DQM98_RS19400 () | 3720936..3721382 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| DQM98_RS19405 () | 3721563..3722333 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| DQM98_RS19410 () | 3722374..3723510 | - | 1137 | WP_001393308.1 | ISAs1 family transposase ISEc1 | Transposase |
| DQM98_RS19415 () | 3723941..3724333 | - | 393 | WP_001101839.1 | hypothetical protein | - |
| DQM98_RS19420 () | 3724311..3726800 | - | 2490 | Protein_3553 | RHS repeat protein | - |
| DQM98_RS19425 () | 3726794..3727666 | + | 873 | WP_111732618.1 | type VI secretion system-associated FHA domain protein TagH | - |
| DQM98_RS19430 () | 3727663..3728187 | + | 525 | WP_001080149.1 | type VI secretion system lipoprotein TssJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|