MGE detailed information
MGE type: Prophage MGE length: 63484 bp
Accession: NZ_LR890508 Location: 1979448..2042931 Organism: Escherichia coli isolate MSB1_9I-sc-2280417 Replicon: chromosome
Accession: NZ_LR890508 Location: 1979448..2042931 Organism: Escherichia coli isolate MSB1_9I-sc-2280417 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMW57_RS09615 () | 1974888..1975226 | + | 339 | Protein_1884 | LysR family transcriptional regulator | - |
| JMW57_RS09620 () | 1975703..1977121 | - | 1419 | WP_001406333.1 | hypothetical protein | - |
| JMW57_RS09625 () | 1977226..1977696 | - | 471 | WP_201524602.1 | hypothetical protein | - |
| JMW57_RS09630 () | 1978199..1979413 | + | 1215 | WP_012602456.1 | type II restriction endonuclease | - |
| JMW57_RS09635 () | 1979448..1980851 | - | 1404 | WP_072095179.1 | DNA cytosine methyltransferase | - |
| JMW57_RS09640 () | 1981288..1981818 | + | 531 | Protein_1889 | hypothetical protein | - |
| JMW57_RS09645 () | 1981822..1982451 | - | 630 | Protein_1890 | host specificity protein J | - |
| JMW57_RS09650 () | 1982511..1983158 | - | 648 | WP_023277304.1 | tail assembly protein | - |
| JMW57_RS09655 () | 1983056..1983799 | - | 744 | WP_097402628.1 | C40 family peptidase | - |
| JMW57_RS09660 () | 1983804..1984502 | - | 699 | WP_020219025.1 | phage minor tail protein L | - |
| JMW57_RS09665 () | 1984512..1984841 | - | 330 | WP_000447253.1 | phage tail protein | - |
| JMW57_RS09670 () | 1984841..1987416 | - | 2576 | Protein_1895 | phage tail tape measure protein | - |
| JMW57_RS09675 () | 1987388..1987717 | - | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| JMW57_RS09680 () | 1987726..1988112 | - | 387 | WP_112038826.1 | phage minor tail protein G | - |
| JMW57_RS09685 () | 1988173..1988916 | - | 744 | WP_000211104.1 | phage tail protein | - |
| JMW57_RS09690 () | 1988927..1989328 | - | 402 | WP_001079419.1 | phage minor tail U family protein | - |
| JMW57_RS09695 () | 1989325..1989903 | - | 579 | WP_000677112.1 | phage tail protein | - |
| JMW57_RS09700 () | 1989915..1990190 | - | 276 | WP_001283152.1 | DNA breaking-rejoining protein | - |
| JMW57_RS09705 () | 1990183..1990506 | - | 324 | WP_001097045.1 | DUF2190 family protein | - |
| JMW57_RS09710 () | 1990593..1992620 | - | 2028 | WP_001136593.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| JMW57_RS09715 () | 1992565..1994073 | - | 1509 | WP_052939015.1 | phage portal protein | - |
| JMW57_RS09720 () | 1994614..1994907 | + | 294 | WP_000738423.1 | increased serum survival lipoprotein Iss | - |
| JMW57_RS09725 () | 1994998..1995180 | - | 183 | WP_001228695.1 | prophage lysis lipoprotein RzoD | - |
| JMW57_RS09730 () | 1995397..1995873 | - | 477 | WP_001197766.1 | glycoside hydrolase family protein | - |
| JMW57_RS09735 () | 1995877..1996203 | - | 327 | WP_001120490.1 | phage holin, lambda family | - |
| JMW57_RS09740 () | 1996280..1997332 | - | 1053 | WP_059334302.1 | site-specific DNA-methyltransferase | - |
| JMW57_RS09745 () | 1997482..1997676 | - | 195 | WP_001355891.1 | hypothetical protein | - |
| JMW57_RS09750 () | 1998077..1998940 | + | 864 | WP_000750482.1 | NYN domain-containing protein | - |
| JMW57_RS09755 () | 1998953..1999318 | - | 366 | WP_087879886.1 | antitermination protein Q | - |
| JMW57_RS09760 () | 1999334..2000323 | - | 990 | WP_016159281.1 | DUF968 domain-containing protein | - |
| JMW57_RS09765 () | 2000331..2001128 | - | 798 | WP_032248148.1 | KilA-N domain-containing protein | - |
| JMW57_RS09770 () | 2001148..2001537 | - | 390 | WP_000767113.1 | RusA family crossover junction endodeoxyribonuclease | - |
| JMW57_RS09775 () | 2001534..2001860 | - | 327 | WP_000210156.1 | LexA family transcriptional regulator | - |
| JMW57_RS09780 () | 2001860..2002354 | - | 495 | WP_072254786.1 | PerC family transcriptional regulator | - |
| JMW57_RS09785 () | 2002351..2003292 | - | 942 | WP_000104977.1 | helix-turn-helix domain-containing protein | - |
| JMW57_RS09790 () | 2003282..2003461 | - | 180 | WP_001250272.1 | DUF4222 domain-containing protein | - |
| JMW57_RS09795 () | 2003637..2004188 | - | 552 | WP_000521510.1 | hypothetical protein | - |
| JMW57_RS09800 () | 2004232..2004432 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| JMW57_RS09805 () | 2004523..2005197 | + | 675 | WP_201524603.1 | LexA family transcriptional regulator | - |
| JMW57_RS09810 () | 2005886..2006248 | + | 363 | WP_000135680.1 | hypothetical protein | - |
| JMW57_RS09815 () | 2006314..2007138 | + | 825 | WP_000081324.1 | DUF2303 family protein | - |
| JMW57_RS09820 () | 2007266..2007802 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| JMW57_RS09825 () | 2007793..2008155 | + | 363 | WP_001242749.1 | phage protein | - |
| JMW57_RS09830 () | 2008155..2008460 | + | 306 | WP_000206732.1 | hypothetical protein | - |
| JMW57_RS09835 () | 2008687..2009850 | + | 1164 | WP_000051893.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| JMW57_RS09845 () | 2010055..2011308 | - | 1254 | WP_000893278.1 | glutamate-5-semialdehyde dehydrogenase | - |
| JMW57_RS09850 () | 2011320..2012423 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| JMW57_RS09855 () | 2012711..2013766 | + | 1056 | WP_000749863.1 | phosphoporin PhoE | - |
| JMW57_RS09860 () | 2013805..2014206 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| JMW57_RS09865 () | 2014264..2015508 | - | 1245 | WP_000189541.1 | esterase FrsA | - |
| - () | 2014924..2015004 | - | 81 | NuclAT_10 | - | - |
| - () | 2014924..2015004 | - | 81 | NuclAT_10 | - | - |
| - () | 2014924..2015004 | - | 81 | NuclAT_10 | - | - |
| - () | 2014924..2015004 | - | 81 | NuclAT_10 | - | - |
| JMW57_RS09870 () | 2015600..2016058 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| JMW57_RS09875 () | 2016319..2017776 | + | 1458 | WP_001293003.1 | cytosol nonspecific dipeptidase | - |
| JMW57_RS09880 () | 2017833..2018354 | - | 522 | Protein_1936 | peptide chain release factor H | - |
| JMW57_RS09885 () | 2018353..2018556 | - | 204 | Protein_1937 | RNA ligase RtcB family protein | - |
| JMW57_RS09890 () | 2018802..2019254 | - | 453 | WP_001059847.1 | GNAT family N-acetyltransferase | - |
| JMW57_RS09895 () | 2019264..2019662 | - | 399 | WP_001263493.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| JMW57_RS09900 () | 2019665..2019958 | - | 294 | WP_032162515.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| JMW57_RS09905 () | 2020010..2021065 | - | 1056 | WP_032162516.1 | DNA polymerase IV | - |
| JMW57_RS09910 () | 2021136..2021921 | - | 786 | WP_000207587.1 | Chemotaxis protein LafU | VF |
| JMW57_RS09915 () | 2021893..2023605 | + | 1713 | Protein_1943 | Flagellar biosynthesis protein FlhA | VF |
| JMW57_RS09920 () | 2023829..2024326 | - | 498 | WP_000006255.1 | REP-associated tyrosine transposase RayT | - |
| JMW57_RS09925 () | 2024502..2025251 | - | 750 | WP_024192679.1 | hypothetical protein | VF |
| JMW57_RS09930 () | 2025461..2025721 | + | 261 | WP_000729703.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| JMW57_RS09935 () | 2025724..2026002 | + | 279 | WP_000615983.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| JMW57_RS09940 () | 2026158..2026898 | + | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| JMW57_RS09945 () | 2026869..2027636 | - | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| JMW57_RS09950 () | 2027842..2028420 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| JMW57_RS09955 () | 2028660..2031104 | + | 2445 | WP_000973083.1 | Acyl-coenzyme A dehydrogenase | VF |
| JMW57_RS09960 () | 2031147..2031593 | - | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| JMW57_RS09965 () | 2031774..2032544 | + | 771 | WP_001118036.1 | 2-oxoglutaramate amidase | - |
| JMW57_RS09970 () | 2032585..2033721 | - | 1137 | WP_000420818.1 | ISAs1 family transposase ISEc1 | Transposase |
| JMW57_RS09975 () | 2034118..2034815 | + | 698 | Protein_1955 | IS1 family transposase IS1A | Transposase |
| JMW57_RS09980 () | 2034809..2035561 | - | 753 | WP_001556415.1 | hypothetical protein | - |
| JMW57_RS09990 () | 2036100..2036831 | - | 732 | WP_001300756.1 | DNA polymerase III subunit epsilon | - |
| JMW57_RS09995 () | 2036896..2037363 | + | 468 | WP_001556414.1 | ribonuclease HI | - |
| JMW57_RS10000 () | 2037360..2038082 | - | 723 | WP_001297210.1 | class I SAM-dependent methyltransferase | - |
| JMW57_RS10005 () | 2038116..2038871 | + | 756 | WP_001052717.1 | hydroxyacylglutathione hydrolase | - |
| JMW57_RS10010 () | 2038943..2040301 | + | 1359 | WP_000644685.1 | Membrane-bound lytic murein transglycosylase D | VF |
| JMW57_RS10015 () | 2040349..2040945 | - | 597 | Protein_1962 | methyltransferase domain-containing protein | - |
| JMW57_RS10020 () | 2040976..2041776 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| JMW57_RS10025 () | 2042017..2042931 | + | 915 | WP_000648577.1 | HTH-type transcriptional regulator DmlR | VF |
| JMW57_RS10030 () | 2042928..2043731 | - | 804 | WP_000997050.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|