MGE detailed information
MGE type: Conjugative plasmid MGE length: 98997 bp
Accession: NZ_LR882058 Location: 1..98997 Organism: Escherichia coli isolate 2014-01-7375 Replicon: plasmid 2
Accession: NZ_LR882058 Location: 1..98997 Organism: Escherichia coli isolate 2014-01-7375 Replicon: plasmid 2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHP09_RS24050 () | 46..1077 | + | 1032 | WP_044706701.1 | replication initiation protein | - |
| IHP09_RS24055 () | 1986..2255 | + | 270 | WP_032181987.1 | hypothetical protein | Antitoxin Detail |
| IHP09_RS24060 () | 2252..2533 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| IHP09_RS24065 () | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| IHP09_RS24070 () | 3538..4011 | + | 474 | WP_077128838.1 | hypothetical protein | - |
| IHP09_RS24075 () | 4488..4754 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| IHP09_RS24080 () | 4754..5248 | - | 495 | WP_001350009.1 | hypothetical protein | - |
| IHP09_RS24085 () | 5304..5906 | - | 603 | WP_045133169.1 | proQ/FINO family protein | - |
| IHP09_RS24090 () | 6260..7606 | + | 1347 | WP_001132021.1 | hypothetical protein | - |
| IHP09_RS24095 () | 7885..9765 | + | 1881 | WP_032221836.1 | colicin | - |
| IHP09_RS24100 () | 9782..10117 | - | 336 | WP_045133168.1 | colicin transporter | - |
| IHP09_RS24105 () | 10246..10593 | + | 348 | WP_000142443.1 | hypothetical protein | - |
| IHP09_RS24110 () | 10611..11201 | - | 591 | WP_045133249.1 | hypothetical protein | - |
| IHP09_RS24115 () | 11201..11458 | - | 258 | WP_000371887.1 | hypothetical protein | - |
| IHP09_RS24120 () | 11787..12239 | + | 453 | WP_000670961.1 | dTDP-3-amino-3,6-dideoxy-alpha-D-galactopyranose 3-N-acetyltransferase | VF |
| IHP09_RS24125 () | 12349..12804 | - | 456 | WP_045133248.1 | IS200-IS605 family transposase IS200C | Transposase |
| IHP09_RS24130 () | 13734..14018 | + | 285 | WP_001331078.1 | hypothetical protein | - |
| IHP09_RS24135 () | 14011..14700 | + | 690 | WP_000796232.1 | hypothetical protein | - |
| IHP09_RS24140 () | 14697..15485 | + | 789 | WP_000016498.1 | site-specific integrase | - |
| IHP09_RS24145 () | 15665..16309 | + | 645 | WP_001144036.1 | ParA family protein | - |
| IHP09_RS24150 () | 16396..16704 | + | 309 | WP_000048808.1 | hypothetical protein | - |
| IHP09_RS24155 () | 17118..18098 | + | 981 | WP_045133365.1 | plasmid segregation protein ParM | - |
| IHP09_RS24160 () | 18091..18507 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| IHP09_RS24165 () | 18509..19783 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| IHP09_RS24170 () | 19783..20220 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| IHP09_RS24175 () | 20217..20465 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| IHP09_RS24180 () | 20883..21785 | + | 903 | WP_077872020.1 | DUF1281 domain-containing protein | - |
| IHP09_RS24185 () | 21782..22093 | + | 312 | WP_032143956.1 | hypothetical protein | - |
| IHP09_RS24190 () | 22169..22852 | + | 684 | WP_045133339.1 | DNA methylase | - |
| IHP09_RS24195 () | 22853..23074 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| IHP09_RS24200 () | 23088..23522 | + | 435 | WP_191536370.1 | DUF1380 family protein | - |
| IHP09_RS24205 () | 23567..24337 | + | 771 | WP_045133340.1 | hypothetical protein | - |
| IHP09_RS24210 () | 24878..25180 | + | 303 | WP_072742858.1 | antirestriction protein | - |
| IHP09_RS24215 () | 25227..25649 | + | 423 | WP_045133341.1 | DUF1380 family protein | - |
| IHP09_RS24220 () | 25646..25837 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| IHP09_RS24225 () | 26170..26238 | - | 69 | Protein_35 | pilus protein | - |
| IHP09_RS24230 () | 26607..27134 | + | 528 | WP_001276121.1 | single-stranded DNA-binding protein | - |
| IHP09_RS24235 () | 27191..27424 | + | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| IHP09_RS24240 () | 27486..29444 | + | 1959 | WP_045133370.1 | ParB/RepB/Spo0J family partition protein | - |
| IHP09_RS24245 () | 29499..29933 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| IHP09_RS24250 () | 29930..30649 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| IHP09_RS24255 () | 30646..31242 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| IHP09_RS24260 () | 31705..32205 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| IHP09_RS24265 () | 32345..32644 | - | 300 | WP_001348082.1 | hypothetical protein | - |
| IHP09_RS24270 () | 32934..33368 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| IHP09_RS24275 () | 33462..33728 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| IHP09_RS24280 () | 33793..34671 | + | 879 | WP_000038331.1 | ISNCY family transposase ISRor2 | VF |
| IHP09_RS24285 () | 34733..34939 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| IHP09_RS24290 () | 34970..35221 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| IHP09_RS24295 () | 35255..35452 | - | 198 | Protein_49 | hypothetical protein | - |
| IHP09_RS24300 () | 35801..36649 | + | 849 | WP_115724690.1 | DUF4942 domain-containing protein | - |
| IHP09_RS24305 () | 36735..37070 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| IHP09_RS24310 () | 37304..37636 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| IHP09_RS24315 () | 37647..40346 | + | 2700 | WP_039005629.1 | hypothetical protein | Relaxase |
| IHP09_RS24320 () | 40372..40944 | + | 573 | WP_000332079.1 | hypothetical protein | - |
| IHP09_RS24325 () | 40994..43183 | - | 2190 | WP_000443942.1 | peptidase domain-containing ABC transporter | - |
| IHP09_RS24330 () | 43183..44436 | - | 1254 | WP_001685252.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| IHP09_RS24335 () | 44539..45174 | - | 636 | WP_000999378.1 | CPBP family intramembrane metalloprotease | - |
| IHP09_RS24340 () | 45959..48250 | - | 2292 | WP_072742854.1 | conjugal transfer protein TrbC | - |
| IHP09_RS24345 () | 48243..49313 | - | 1071 | WP_039005625.1 | IncI1-type conjugal transfer protein TrbB | - |
| IHP09_RS24350 () | 49332..50540 | - | 1209 | WP_039005623.1 | IncI1-type conjugal transfer protein TrbA | - |
| - () | 50720..50782 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50720..50782 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50720..50782 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - () | 50720..50782 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| IHP09_RS24355 () | 50832..50984 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| IHP09_RS24360 () | 51056..51307 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| IHP09_RS24365 () | 52111..52788 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| IHP09_RS24370 () | 52788..53135 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| IHP09_RS24375 () | 53155..54726 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| IHP09_RS24380 () | 55241..55450 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| IHP09_RS24385 () | 55522..56172 | - | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| IHP09_RS24390 () | 56246..58414 | - | 2169 | WP_000698357.1 | DotA/TraY family protein | - |
| IHP09_RS24395 () | 58511..59095 | - | 585 | WP_001476649.1 | IncI1-type conjugal transfer protein TraX | - |
| IHP09_RS24400 () | 59124..60326 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| IHP09_RS24405 () | 60293..60907 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| IHP09_RS24410 () | 60907..63951 | - | 3045 | WP_001024782.1 | IncI1-type conjugal transfer protein TraU | - |
| IHP09_RS24415 () | 64041..64841 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| IHP09_RS24420 () | 64825..65013 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| IHP09_RS24425 () | 65077..65481 | - | 405 | WP_021497835.1 | IncI1-type conjugal transfer protein TraR | - |
| IHP09_RS24430 () | 65532..66059 | - | 528 | WP_045133141.1 | conjugal transfer protein TraQ | - |
| IHP09_RS24435 () | 66059..66763 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| IHP09_RS24440 () | 66763..68052 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| IHP09_RS24445 () | 68055..69038 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| IHP09_RS24450 () | 69049..69741 | - | 693 | WP_000138551.1 | DotI/IcmL family type IV secretion protein | - |
| IHP09_RS24455 () | 69738..70085 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| IHP09_RS24460 () | 70103..73867 | - | 3765 | WP_045133142.1 | DNA primase | - |
| IHP09_RS24465 () | 73957..74508 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| IHP09_RS24470 () | 74523..74813 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| IHP09_RS24475 () | 74810..75958 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| IHP09_RS24480 () | 75955..76773 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| IHP09_RS24485 () | 76770..77228 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| IHP09_RS24490 () | 77623..78207 | - | 585 | WP_045133143.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| IHP09_RS24495 () | 78267..79469 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| IHP09_RS24500 () | 79555..80379 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| IHP09_RS24505 () | 80530..81684 | - | 1155 | WP_001139955.1 | integrase | - |
| IHP09_RS24510 () | 83124..83321 | + | 198 | WP_032159596.1 | hypothetical protein | - |
| IHP09_RS24515 () | 83318..84754 | - | 1437 | WP_015058206.1 | hypothetical protein | VF |
| IHP09_RS24520 () | 84742..85398 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| IHP09_RS24525 () | 85383..85943 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| IHP09_RS24530 () | 85953..86567 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| IHP09_RS24535 () | 86584..87669 | - | 1086 | WP_001208802.1 | hypothetical protein | VF |
| IHP09_RS24540 () | 87682..89235 | - | 1554 | WP_000362206.1 | hypothetical protein | VF |
| IHP09_RS24545 () | 89246..89698 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| IHP09_RS24550 () | 89685..90980 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| IHP09_RS24555 () | 90973..92655 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| IHP09_RS24560 () | 92669..93106 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| IHP09_RS24565 () | 93106..94173 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| IHP09_RS24570 () | 95145..95564 | - | 420 | WP_072115345.1 | PilI type IV pilus biogenesis protein | - |
| IHP09_RS24575 () | 95691..96374 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| IHP09_RS24580 () | 96627..97160 | - | 534 | WP_001306770.1 | transcription termination factor NusG | - |
| IHP09_RS24585 () | 97602..97889 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| IHP09_RS24590 () | 97807..98070 | - | 264 | WP_001324596.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|