MGE detailed information
MGE type: Conjugative plasmid MGE length: 72593 bp
Accession: NZ_LR878367 Location: 1..72593 Organism: Shigella flexneri 3a isolate 83 Replicon: plasmid 83_pKSR100
Accession: NZ_LR878367 Location: 1..72593 Organism: Shigella flexneri 3a isolate 83 Replicon: plasmid 83_pKSR100
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JMV05_RS24225 (52) | 52..486 | - | 435 | WP_000274503.1 | DUF1380 family protein | - |
| JMV05_RS24230 (500) | 500..721 | - | 222 | WP_001104881.1 | hypothetical protein | - |
| JMV05_RS24235 (722) | 722..1405 | - | 684 | WP_000085883.1 | DNA methylase | - |
| JMV05_RS24240 (1482) | 1482..1775 | - | 294 | WP_032146011.1 | hypothetical protein | - |
| JMV05_RS24245 (1923) | 1923..2885 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| JMV05_RS24250 (2888) | 2888..3238 | + | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| JMV05_RS24255 (3361) | 3361..3642 | - | 282 | WP_001333089.1 | hypothetical protein | - |
| JMV05_RS24260 (3770) | 3770..4004 | - | 235 | Protein_7 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JMV05_RS24270 (6913) | 6913..7650 | - | 738 | WP_013362818.1 | rRNA adenine N-6-methyltransferase | ARG |
| JMV05_RS24275 (7776) | 7776..7871 | - | 96 | WP_013362819.1 | 23S rRNA methyltransferase attenuation leader peptide | - |
| JMV05_RS24280 (8006) | 8006..8710 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| JMV05_RS24285 (8832) | 8832..9737 | + | 906 | WP_000219391.1 | hypothetical protein | ARG |
| JMV05_RS24290 (9734) | 9734..10972 | + | 1239 | WP_000004159.1 | macrolide resistance MFS transporter Mrx(A) | - |
| JMV05_RS24295 (10972) | 10972..11556 | + | 585 | WP_001137892.1 | macrolide-binding transcriptional repressor MphR(A) | - |
| JMV05_RS24300 (12049) | 12049..12813 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| JMV05_RS24305 (12961) | 12961..13665 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| JMV05_RS24310 (13731) | 13731..14162 | + | 432 | Protein_17 | Tn3 family transposase TnpR_Tn3 | Transposase |
| JMV05_RS24315 (14345) | 14345..15205 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| JMV05_RS24320 (15355) | 15355..15453 | - | 99 | Protein_19 | IS1 family transposase | - |
| JMV05_RS24325 (15482) | 15482..16792 | - | 1311 | WP_001262765.1 | DUF262 domain-containing protein | - |
| JMV05_RS24330 (17077) | 17077..17478 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| JMV05_RS24335 (17411) | 17411..17668 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| JMV05_RS24340 (17761) | 17761..18414 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| JMV05_RS24345 (19352) | 19352..20209 | - | 858 | WP_016240488.1 | incFII family plasmid replication initiator RepA | - |
| JMV05_RS24350 (20202) | 20202..20276 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| JMV05_RS24355 (20521) | 20521..20769 | - | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| JMV05_RS24360 (21054) | 21054..21203 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (21248) | 21248..21307 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (21248) | 21248..21307 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (21248) | 21248..21307 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| - (21248) | 21248..21307 | + | 60 | NuclAT_1 | - | Antitoxin Detail |
| JMV05_RS24365 (21450) | 21450..21923 | - | 474 | WP_016240489.1 | hypothetical protein | - |
| JMV05_RS24370 (22078) | 22078..22668 | - | 591 | WP_033807967.1 | DUF2726 domain-containing protein | - |
| JMV05_RS24375 (22706) | 22706..22915 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| JMV05_RS24380 (22961) | 22961..23422 | - | 462 | WP_001233850.1 | thermonuclease family protein | - |
| JMV05_RS24385 (23668) | 23668..23880 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| JMV05_RS24390 (24012) | 24012..24572 | - | 561 | WP_033807966.1 | fertility inhibition protein FinO | - |
| JMV05_RS24395 (24627) | 24627..25373 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| JMV05_RS24400 (25393) | 25393..30663 | - | 5271 | WP_152030378.1 | Multifunctional conjugation protein TraI | Relaxase |
| JMV05_RS24405 (30663) | 30663..32915 | - | 2253 | WP_128867119.1 | type IV conjugative transfer system coupling protein TraD | - |
| JMV05_RS24410 (32966) | 32966..33703 | - | 738 | WP_012881122.1 | hypothetical protein | - |
| JMV05_RS24415 (33906) | 33906..34637 | - | 732 | WP_012881123.1 | conjugal transfer complement resistance protein TraT | - |
| JMV05_RS24420 (34651) | 34651..35160 | - | 510 | WP_000628111.1 | conjugal transfer entry exclusion protein TraS | - |
| JMV05_RS24425 (35157) | 35157..37982 | - | 2826 | WP_033807963.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| JMV05_RS24430 (37979) | 37979..39352 | - | 1374 | WP_033807962.1 | conjugal transfer pilus assembly protein TraH | - |
| JMV05_RS24435 (39339) | 39339..39731 | - | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| JMV05_RS24440 (39712) | 39712..40059 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| JMV05_RS24445 (39989) | 39989..40534 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| JMV05_RS24450 (40521) | 40521..40805 | - | 285 | WP_000624107.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| JMV05_RS24455 (40886) | 40886..41221 | + | 336 | WP_001620807.1 | hypothetical protein | - |
| JMV05_RS24460 (41202) | 41202..41543 | - | 342 | WP_000556795.1 | conjugal transfer protein TrbA | - |
| JMV05_RS24465 (41557) | 41557..42300 | - | 744 | WP_001030371.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| JMV05_RS24470 (42293) | 42293..42550 | - | 258 | WP_033807961.1 | conjugal transfer protein TrbE | - |
| JMV05_RS24475 (42577) | 42577..44481 | - | 1905 | WP_225620370.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| JMV05_RS24480 (44717) | 44717..45097 | - | 381 | WP_001462111.1 | hypothetical protein | - |
| JMV05_RS24485 (45094) | 45094..45732 | - | 639 | WP_033807960.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| JMV05_RS24490 (45741) | 45741..46046 | - | 306 | WP_000224418.1 | hypothetical protein | - |
| JMV05_RS24495 (46076) | 46076..47068 | - | 993 | WP_000830849.1 | conjugal transfer pilus assembly protein TraU | - |
| JMV05_RS24500 (47065) | 47065..47697 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| JMV05_RS24505 (47694) | 47694..48080 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| JMV05_RS24510 (48077) | 48077..50707 | - | 2631 | WP_000069772.1 | type IV secretion system protein TraC | - |
| JMV05_RS24515 (50833) | 50833..51180 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| JMV05_RS24520 (51208) | 51208..51426 | - | 219 | WP_033807959.1 | hypothetical protein | - |
| JMV05_RS24525 (51525) | 51525..51998 | - | 474 | WP_033807958.1 | hypothetical protein | - |
| JMV05_RS24530 (51991) | 51991..52404 | - | 414 | WP_000549589.1 | hypothetical protein | - |
| JMV05_RS24535 (52397) | 52397..52618 | - | 222 | WP_001278683.1 | conjugal transfer protein TraR | - |
| JMV05_RS24540 (52753) | 52753..53268 | - | 516 | WP_000809881.1 | type IV conjugative transfer system lipoprotein TraV | - |
| JMV05_RS24545 (53265) | 53265..53585 | - | 321 | WP_012881128.1 | conjugal transfer protein TrbD | - |
| JMV05_RS24550 (53572) | 53572..54162 | - | 591 | WP_000002784.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| JMV05_RS24555 (54152) | 54152..55579 | - | 1428 | WP_033807957.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| JMV05_RS24560 (55579) | 55579..56307 | - | 729 | WP_001230769.1 | type-F conjugative transfer system secretin TraK | - |
| JMV05_RS24565 (56294) | 56294..56860 | - | 567 | WP_000399780.1 | type IV conjugative transfer system protein TraE | - |
| JMV05_RS24570 (56882) | 56882..57193 | - | 312 | WP_000012113.1 | type IV conjugative transfer system protein TraL | - |
| JMV05_RS24575 (57208) | 57208..57567 | - | 360 | WP_001098994.1 | type IV conjugative transfer system pilin TraA | - |
| JMV05_RS24580 (57601) | 57601..57828 | - | 228 | WP_000589556.1 | conjugal transfer relaxosome protein TraY | - |
| JMV05_RS24585 (57948) | 57948..58595 | - | 648 | WP_000332523.1 | transcriptional regulator TraJ family protein | - |
| JMV05_RS24590 (58787) | 58787..59170 | - | 384 | WP_001151529.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| JMV05_RS24595 (59503) | 59503..60093 | + | 591 | WP_000252683.1 | hypothetical protein | VF |
| JMV05_RS24600 (60390) | 60390..61211 | - | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| JMV05_RS24605 (61322) | 61322..61618 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| JMV05_RS24610 (61918) | 61918..62214 | + | 297 | Protein_77 | hypothetical protein | - |
| JMV05_RS24615 (62533) | 62533..62658 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| JMV05_RS24620 (62600) | 62600..62749 | - | 150 | Protein_79 | plasmid maintenance protein Mok | - |
| JMV05_RS24625 (62771) | 62771..62950 | + | 180 | WP_001334662.1 | hypothetical protein | - |
| - (62735) | 62735..62959 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (62735) | 62735..62959 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (62735) | 62735..62959 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (62735) | 62735..62959 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| JMV05_RS24630 (62928) | 62928..63690 | - | 763 | Protein_81 | plasmid SOS inhibition protein A | - |
| JMV05_RS24635 (63687) | 63687..64121 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| JMV05_RS24640 (64176) | 64176..66134 | - | 1959 | WP_152030379.1 | ParB/RepB/Spo0J family partition protein | - |
| JMV05_RS24645 (66198) | 66198..66431 | - | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| JMV05_RS24650 (66487) | 66487..67008 | - | 522 | WP_033807850.1 | single-stranded DNA-binding protein | - |
| JMV05_RS24655 (67307) | 67307..67744 | + | 438 | Protein_86 | hypothetical protein | - |
| JMV05_RS24660 (67830) | 67830..68393 | - | 564 | WP_016240496.1 | class I SAM-dependent methyltransferase | - |
| JMV05_RS24665 (68440) | 68440..69801 | - | 1362 | WP_050008613.1 | DUF3560 domain-containing protein | - |
| JMV05_RS24670 (69853) | 69853..70083 | - | 231 | WP_000218647.1 | hypothetical protein | - |
| JMV05_RS24675 (71121) | 71121..71312 | - | 192 | WP_001027493.1 | hypothetical protein | - |
| JMV05_RS24680 (71309) | 71309..71731 | - | 423 | WP_000271762.1 | DUF1380 family protein | - |
| JMV05_RS24685 (71778) | 71778..72204 | - | 427 | Protein_92 | antirestriction protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|