MGE detailed information
MGE type: Genomic_island MGE length: 21813 bp
Accession: NZ_LR213455 Location: 357852..379664 Organism: Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 Replicon: chromosome
Accession: NZ_LR213455 Location: 357852..379664 Organism: Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0E35_RS01725 (352964) | 352964..353299 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| E0E35_RS01730 (353370) | 353370..354869 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| E0E35_RS01735 (355101) | 355101..356300 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| E0E35_RS01740 (356829) | 356829..357526 | + | 698 | WP_227804279.1 | IS1 family transposase | - |
| E0E35_RS01745 (357544) | 357544..357836 | - | 293 | Protein_324 | transposase | - |
| E0E35_RS01750 (357972) | 357972..359126 | + | 1155 | WP_232111812.1 | O-antigen ligase family protein | - |
| E0E35_RS01755 (359126) | 359126..359860 | + | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| E0E35_RS01760 (360328) | 360328..361089 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| E0E35_RS01765 (361133) | 361133..362212 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| E0E35_RS01770 (362230) | 362230..362496 | + | 267 | WP_071818670.1 | hypothetical protein | VF |
| E0E35_RS01780 (363787) | 363787..364674 | + | 888 | Protein_331 | F1 capsule-anchoring protein | VF |
| E0E35_RS01790 (365442) | 365442..365711 | + | 270 | Protein_333 | fimbrial biogenesis outer membrane usher protein | - |
| E0E35_RS01795 (365850) | 365850..366362 | + | 513 | WP_000751953.1 | hypothetical protein | - |
| E0E35_RS01800 (366469) | 366469..367230 | - | 762 | WP_011069549.1 | hypothetical protein | VF |
| E0E35_RS01805 (367476) | 367476..368240 | + | 765 | WP_000442141.1 | winged helix-turn-helix domain-containing protein | - |
| E0E35_RS01810 (368233) | 368233..368709 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| E0E35_RS01815 (368796) | 368796..369794 | - | 999 | Protein_338 | DUF2776 family protein | - |
| E0E35_RS01820 (370212) | 370212..371801 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| E0E35_RS01825 (372063) | 372063..373685 | + | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| E0E35_RS26515 (373875) | 373875..373988 | + | 114 | WP_001296785.1 | protein YhiY | - |
| E0E35_RS01830 (374051) | 374051..375118 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| E0E35_RS01835 (375115) | 375115..377850 | + | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| E0E35_RS01840 (377850) | 377850..378974 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| E0E35_RS01845 (379033) | 379033..379308 | + | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| E0E35_RS01850 (379305) | 379305..379664 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| E0E35_RS01855 (379784) | 379784..380185 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| E0E35_RS01860 (380191) | 380191..380997 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| E0E35_RS01865 (380994) | 380994..381758 | - | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| E0E35_RS01870 (381758) | 381758..382591 | - | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| E0E35_RS01875 (382588) | 382588..383532 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.002 |