MGE detailed information
MGE type: Genomic_island MGE length: 23123 bp
Accession: NZ_LR213452 Location: 266960..290082 Organism: Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 Replicon: chromosome
Accession: NZ_LR213452 Location: 266960..290082 Organism: Shigella flexneri strain AUSMDU00008355 isolate AUSMDU00008355 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0E33_RS01280 () | 262072..262407 | + | 336 | WP_000626187.1 | universal stress protein UspB | - |
| E0E33_RS01285 () | 262478..263977 | - | 1500 | WP_000902779.1 | inorganic phosphate transporter PitA | - |
| E0E33_RS01290 () | 264209..265408 | + | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| E0E33_RS01295 () | 265937..266634 | + | 698 | Protein_243 | IS1 family transposase | - |
| E0E33_RS01300 () | 266652..266944 | - | 293 | Protein_244 | transposase | - |
| E0E33_RS01305 () | 266960..268234 | + | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| E0E33_RS01310 () | 268234..268908 | + | 675 | WP_000245839.1 | helix-turn-helix transcriptional regulator | - |
| E0E33_RS01315 () | 269436..270197 | + | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| E0E33_RS01320 () | 270241..271320 | + | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| E0E33_RS01325 () | 271317..271604 | + | 288 | WP_077696389.1 | hypothetical protein | VF |
| E0E33_RS01335 () | 272895..273935 | + | 1041 | WP_005065168.1 | F1 capsule-anchoring protein | VF |
| E0E33_RS01340 () | 273986..274138 | + | 153 | Protein_252 | IS1 family transposase | - |
| E0E33_RS01345 () | 274167..275376 | - | 1210 | Protein_253 | IS3 family transposase IS629 | Transposase |
| E0E33_RS01350 () | 275427..275992 | + | 566 | Protein_254 | IS1 family transposase IS1X2 | Transposase |
| E0E33_RS01355 () | 276010..276129 | + | 120 | Protein_255 | fimbrial biogenesis outer membrane usher protein | - |
| E0E33_RS01360 () | 276280..276780 | + | 501 | WP_167389531.1 | hypothetical protein | - |
| E0E33_RS01365 () | 276887..277648 | - | 762 | WP_075332712.1 | hypothetical protein | VF |
| E0E33_RS01370 () | 277894..278658 | + | 765 | WP_000442142.1 | winged helix-turn-helix domain-containing protein | - |
| E0E33_RS01375 () | 278651..279127 | + | 477 | WP_000182502.1 | hypothetical protein | - |
| E0E33_RS01380 () | 279214..280245 | - | 1032 | Protein_260 | DUF2776 family protein | - |
| E0E33_RS01385 () | 280630..282219 | + | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| E0E33_RS01390 () | 282481..284103 | + | 1623 | WP_005065086.1 | DUF4049 domain-containing protein | - |
| E0E33_RS01395 () | 284469..285536 | + | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| E0E33_RS01400 () | 285533..288268 | + | 2736 | WP_000149172.1 | Ribosome-associated ATPase | VF |
| E0E33_RS01405 () | 288268..289392 | + | 1125 | WP_001216257.1 | ABC transporter permease | - |
| E0E33_RS01410 () | 289451..289726 | + | 276 | WP_025760846.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| E0E33_RS01415 () | 289723..290082 | + | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| E0E33_RS01420 () | 290202..290603 | - | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| E0E33_RS01425 () | 290609..291415 | - | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| E0E33_RS01430 () | 291412..292176 | - | 765 | WP_001136248.1 | nickel import ATP-binding protein NikD | - |
| E0E33_RS01435 () | 292176..293009 | - | 834 | WP_001008974.1 | nickel ABC transporter permease subunit NikC | - |
| E0E33_RS01440 () | 293006..293950 | - | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.004 |