MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 36545 bp
Accession: NZ_LN681227 Location: 2312102..2348646 Organism: Xenorhabdus nematophila AN6/1 Replicon: chromosome
Accession: NZ_LN681227 Location: 2312102..2348646 Organism: Xenorhabdus nematophila AN6/1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XNC2_RS09945 () | 2307126..2307704 | - | 579 | WP_013141546.1 | type IV conjugative transfer system lipoprotein TraV | - |
| XNC2_RS09950 () | 2307701..2309014 | - | 1314 | WP_041573865.1 | conjugal transfer protein TraB | - |
| XNC2_RS09955 () | 2309014..2309931 | - | 918 | WP_013141544.1 | type-F conjugative transfer system secretin TraK | - |
| XNC2_RS09960 () | 2309915..2310208 | - | 294 | Protein_1971 | pilus assembly protein | - |
| XNC2_RS23290 () | 2310274..2310417 | - | 144 | WP_021326607.1 | hypothetical protein | - |
| XNC2_RS09965 () | 2310598..2311260 | - | 663 | WP_013141542.1 | hypothetical protein | - |
| XNC2_RS09970 () | 2311260..2311637 | - | 378 | WP_013141541.1 | hypothetical protein | - |
| XNC2_RS09975 () | 2311647..2312093 | - | 447 | WP_013184411.1 | hypothetical protein | - |
| XNC2_RS22820 () | 2312102..2312506 | - | 405 | Protein_1976 | DUF4400 domain-containing protein | - |
| XNC2_RS23480 () | 2312492..2312788 | - | 297 | Protein_1977 | type IV secretion system DNA-binding domain-containing protein | - |
| XNC2_RS09985 () | 2312901..2313941 | + | 1041 | WP_013141539.1 | IS481 family transposase ISVvu4 | Transposase |
| XNC2_RS09990 () | 2313975..2314505 | - | 531 | WP_013141538.1 | hypothetical protein | - |
| XNC2_RS09995 () | 2314502..2316365 | - | 1864 | Protein_1980 | TraI domain-containing protein | - |
| XNC2_RS10000 () | 2316532..2317149 | + | 618 | WP_013184413.1 | hypothetical protein | - |
| XNC2_RS10005 () | 2317131..2317364 | + | 234 | WP_013184414.1 | hypothetical protein | - |
| XNC2_RS10010 () | 2317364..2319550 | + | 2187 | WP_013184415.1 | DNA topoisomerase 3 | - |
| XNC2_RS10015 () | 2319608..2319907 | + | 300 | Protein_1984 | IS630 family transposase ISSsu3 | Transposase |
| XNC2_RS10020 () | 2320543..2320821 | + | 279 | WP_113967504.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| XNC2_RS10025 () | 2320818..2321174 | + | 357 | WP_013184418.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| XNC2_RS10030 () | 2321620..2322330 | - | 711 | WP_013184420.1 | portal protein | - |
| XNC2_RS10035 () | 2322336..2322728 | - | 393 | Protein_1988 | transposase | - |
| XNC2_RS10040 () | 2322887..2323633 | + | 747 | Protein_1989 | IS630 family transposase ISPlu8 | Transposase |
| XNC2_RS10045 () | 2323635..2324684 | + | 1050 | Protein_1990 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| XNC2_RS10050 () | 2324769..2325791 | + | 1023 | WP_010845954.1 | IS110 family transposase IS1618 | Transposase |
| XNC2_RS10055 () | 2325942..2326265 | + | 324 | WP_013184424.1 | IS630 family transposase ISSsu3 | Transposase |
| XNC2_RS10060 () | 2326297..2326773 | + | 477 | WP_197541258.1 | IS630 family transposase ISOt3 | Transposase |
| XNC2_RS20860 () | 2326990..2329376 | + | 2387 | Protein_1994 | Tn3 family transposase ISKox2 | Transposase |
| XNC2_RS10070 () | 2329377..2329910 | - | 534 | WP_045107667.1 | hypothetical protein | VF |
| XNC2_RS10075 () | 2330492..2332435 | + | 1944 | WP_013184428.1 | exoribonuclease II | - |
| XNC2_RS10080 () | 2332573..2333468 | + | 896 | Protein_1997 | class A beta-lactamase | - |
| XNC2_RS10085 () | 2333530..2334006 | - | 477 | WP_197541259.1 | IS630 family transposase ISOt3 | Transposase |
| XNC2_RS21435 () | 2334054..2334362 | - | 309 | WP_013184432.1 | IS630 transposase-related protein | - |
| XNC2_RS10090 () | 2334369..2334692 | - | 324 | WP_010845962.1 | stress response translation initiation inhibitor YciH | - |
| XNC2_RS10095 () | 2334685..2335410 | - | 726 | WP_013184433.1 | orotidine-5'-phosphate decarboxylase | - |
| XNC2_RS10100 () | 2335579..2336748 | - | 1170 | WP_010845965.1 | lipopolysaccharide assembly protein LapB | - |
| XNC2_RS10105 () | 2336755..2337069 | - | 315 | WP_010845966.1 | LapA family protein | - |
| XNC2_RS10115 () | 2337678..2338274 | + | 597 | WP_013184434.1 | GTP cyclohydrolase II | - |
| XNC2_RS10120 () | 2338380..2341046 | - | 2667 | WP_173363111.1 | aconitate hydratase AcnA | - |
| XNC2_RS10125 () | 2341383..2342204 | + | 822 | WP_010845970.1 | hypothetical protein | - |
| XNC2_RS10130 () | 2342326..2343300 | - | 975 | WP_010845971.1 | HTH-type transcriptional regulator CysB | - |
| XNC2_RS10135 () | 2343646..2346243 | - | 2598 | WP_013184437.1 | type I DNA topoisomerase | - |
| XNC2_RS22220 () | 2346683..2347447 | + | 765 | Protein_2009 | IS5 family transposase | - |
| XNC2_RS10150 () | 2347606..2348646 | - | 1041 | WP_013184439.1 | IS481 family transposase ISVvu4 | Transposase |
| XNC2_RS10155 () | 2348850..2349896 | - | 1047 | WP_010845977.1 | protease SohB | - |
| XNC2_RS10160 () | 2350136..2350900 | + | 765 | WP_010845978.1 | YciK family oxidoreductase | - |
| XNC2_RS10165 () | 2350900..2351496 | + | 597 | WP_013184441.1 | cob(I)yrinic acid a,c-diamide adenosyltransferase | - |
| XNC2_RS10170 () | 2351555..2352478 | - | 924 | WP_010845980.1 | 23S rRNA pseudouridine(2605) synthase RluB | - |
| XNC2_RS10175 () | 2352541..2353161 | - | 621 | WP_013184442.1 | threonylcarbamoyl-AMP synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Xenorhabdus nematophila ATCC 19061 | Integrative and Conjugative Element | TA24799 | NC_014228 | 2312367..2348951 | 0 |