MGE detailed information
MGE type: Prophage MGE length: 20255 bp
Accession: NZ_LM993812 Location: 1600962..1621216 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Accession: NZ_LM993812 Location: 1600962..1621216 Organism: Escherichia coli strain K-12 substr. HMS174 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECHMS174_RS07870 () | 1597477..1598223 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| ECHMS174_RS07875 () | 1598312..1598998 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| ECHMS174_RS07880 () | 1599175..1599378 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ECHMS174_RS07885 () | 1599413..1600873 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ECHMS174_RS07890 () | 1600962..1602329 | - | 1368 | Protein_1503 | MHS family MFS transporter | - |
| ECHMS174_RS25345 () | 1602850..1602963 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| ECHMS174_RS07895 () | 1603032..1603265 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ECHMS174_RS07900 () | 1603582..1604172 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ECHMS174_RS07905 () | 1604270..1604845 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ECHMS174_RS07910 () | 1604845..1605807 | - | 963 | WP_001027733.1 | phage tail protein | - |
| ECHMS174_RS07915 () | 1605758..1606327 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ECHMS174_RS07920 () | 1606716..1606949 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ECHMS174_RS07925 () | 1607007..1607417 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ECHMS174_RS07930 () | 1607569..1607742 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ECHMS174_RS07935 () | 1607914..1608069 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| ECHMS174_RS25350 () | 1608148..1608213 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| ECHMS174_RS23525 () | 1608216..1608404 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| ECHMS174_RS07940 () | 1608415..1608627 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ECHMS174_RS07945 () | 1608990..1609487 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ECHMS174_RS07950 () | 1609484..1610017 | - | 534 | WP_001092971.1 | lysozyme | - |
| ECHMS174_RS07955 () | 1610014..1610325 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| ECHMS174_RS07960 () | 1610330..1610545 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ECHMS174_RS07965 () | 1611299..1611514 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ECHMS174_RS07970 () | 1611815..1612027 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ECHMS174_RS25355 () | 1612082..1612171 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| ECHMS174_RS07975 () | 1612449..1613201 | - | 753 | WP_001047135.1 | antitermination protein | - |
| ECHMS174_RS07980 () | 1613215..1614264 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| ECHMS174_RS07985 () | 1614266..1614544 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| ECHMS174_RS07990 () | 1614611..1614862 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| ECHMS174_RS07995 () | 1615079..1615234 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ECHMS174_RS08000 () | 1615306..1615593 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ECHMS174_RS08005 () | 1615593..1615832 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ECHMS174_RS23530 () | 1615857..1616162 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| ECHMS174_RS08010 () | 1616365..1616697 | + | 333 | WP_001301033.1 | protein FlxA | - |
| ECHMS174_RS22810 () | 1617134..1617283 | - | 150 | WP_011443592.1 | hypothetical protein | - |
| ECHMS174_RS08015 () | 1617318..1617596 | - | 279 | Protein_1534 | hypothetical protein | - |
| ECHMS174_RS08020 () | 1617580..1617810 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ECHMS174_RS08025 () | 1617894..1618301 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ECHMS174_RS08030 () | 1618468..1618623 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ECHMS174_RS08035 () | 1618783..1619001 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| ECHMS174_RS08045 () | 1619569..1619757 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ECHMS174_RS08050 () | 1619754..1619912 | + | 159 | WP_045152978.1 | DUF1482 family protein | - |
| ECHMS174_RS08060 () | 1619988..1621216 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| ECHMS174_RS08065 () | 1621374..1622000 | + | 627 | Protein_1542 | exonuclease VIII | - |
| ECHMS174_RS24830 () | 1621997..1622137 | + | 141 | Protein_1543 | MFS transporter | - |
| ECHMS174_RS25780 () | 1622186..1622305 | - | 120 | WP_001299090.1 | hypothetical protein | - |
| ECHMS174_RS08070 () | 1622561..1622869 | + | 309 | WP_001340364.1 | acid resistance repetitive basic protein Asr | - |
| ECHMS174_RS08075 () | 1622962..1623045 | + | 84 | WP_000233093.1 | stationary phase-induced protein | - |
| ECHMS174_RS08080 () | 1623145..1623966 | + | 822 | WP_001260865.1 | serine protease | - |
| ECHMS174_RS08085 () | 1624005..1624334 | - | 330 | WP_000046661.1 | multidrug/spermidine efflux SMR transporter subunit MdtI | - |
| ECHMS174_RS08090 () | 1624321..1624686 | - | 366 | WP_000276149.1 | multidrug/spermidine efflux SMR transporter subunit MdtJ | - |
| ECHMS174_RS08095 () | 1625098..1626132 | + | 1035 | WP_001118241.1 | AI-2 transporter TqsA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.004 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.004 |