MGE detailed information
MGE type: Prophage MGE length: 63589 bp
Accession: NZ_CP127019 Location: 1625555..1689143 Organism: Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-009_371M Replicon: chromosome
Accession: NZ_CP127019 Location: 1625555..1689143 Organism: Staphylococcus aureus strain CC239-MRSA-III(var.) isolate Trinidad&Tobago_2020-009_371M Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQO11_RS07890 (1620928) | 1620928..1621176 | + | 249 | WP_001151997.1 | ferredoxin | - |
| QQO11_RS07895 (1621282) | 1621282..1621827 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| QQO11_RS07900 (1622106) | 1622106..1622225 | - | 120 | WP_001789947.1 | hypothetical protein | - |
| QQO11_RS07905 (1622424) | 1622424..1623338 | - | 915 | WP_285236765.1 | DUF1672 domain-containing protein | - |
| QQO11_RS07910 (1623353) | 1623353..1623559 | - | 207 | WP_001033757.1 | hypothetical protein | - |
| QQO11_RS07915 (1623552) | 1623552..1624490 | - | 939 | WP_000472936.1 | DUF1672 domain-containing protein | - |
| QQO11_RS07920 (1624547) | 1624547..1625464 | - | 918 | WP_000476873.1 | DUF1672 domain-containing protein | - |
| QQO11_RS07925 (1625555) | 1625555..1625770 | - | 216 | WP_000126130.1 | hypothetical protein | - |
| QQO11_RS07930 (1626492) | 1626492..1627946 | - | 1455 | WP_285236766.1 | N-acetylmuramoyl-L-alanine amidase | - |
| QQO11_RS07935 (1627957) | 1627957..1628259 | - | 303 | WP_000339144.1 | phage holin | - |
| QQO11_RS07940 (1628395) | 1628395..1628694 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| QQO11_RS07945 (1628740) | 1628740..1628904 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| QQO11_RS07950 (1628897) | 1628897..1629286 | - | 390 | WP_001166599.1 | DUF2977 domain-containing protein | - |
| QQO11_RS07955 (1629286) | 1629286..1630752 | - | 1467 | WP_000067131.1 | BppU family phage baseplate upper protein | - |
| QQO11_RS07960 (1630752) | 1630752..1632663 | - | 1912 | Protein_1566 | hypothetical protein | - |
| QQO11_RS07965 (1632679) | 1632679..1632969 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| QQO11_RS07970 (1632969) | 1632969..1634552 | - | 1584 | WP_000384462.1 | prophage endopeptidase tail family protein | - |
| QQO11_RS07975 (1634561) | 1634561..1635385 | - | 825 | WP_020444679.1 | phage tail family protein | - |
| QQO11_RS07980 (1635385) | 1635385..1641585 | - | 6201 | WP_285236767.1 | phage tail tape measure protein | - |
| QQO11_RS07985 (1641599) | 1641599..1641757 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| QQO11_RS07990 (1641799) | 1641799..1642149 | - | 351 | WP_000589167.1 | hypothetical protein | - |
| QQO11_RS07995 (1642207) | 1642207..1642662 | - | 456 | WP_000169128.1 | Ig-like domain-containing protein | - |
| QQO11_RS08000 (1642754) | 1642754..1643395 | - | 642 | WP_000807532.1 | phage tail protein | - |
| QQO11_RS08005 (1643430) | 1643430..1643825 | - | 396 | WP_001023802.1 | DUF3168 domain-containing protein | - |
| QQO11_RS08010 (1643826) | 1643826..1644227 | - | 402 | WP_000110020.1 | hypothetical protein | - |
| QQO11_RS08015 (1644224) | 1644224..1644556 | - | 333 | WP_000395501.1 | hypothetical protein | - |
| QQO11_RS08020 (1644568) | 1644568..1644846 | - | 279 | WP_000050975.1 | head-tail connector protein | - |
| QQO11_RS08025 (1644915) | 1644915..1646078 | - | 1164 | WP_001142735.1 | phage major capsid protein | - |
| QQO11_RS08030 (1646090) | 1646090..1646862 | - | 773 | Protein_1580 | Clp protease ClpP | - |
| QQO11_RS08035 (1646846) | 1646846..1648084 | - | 1239 | WP_001100670.1 | phage portal protein | - |
| QQO11_RS08040 (1648089) | 1648089..1649780 | - | 1692 | WP_000153555.1 | terminase large subunit | - |
| QQO11_RS08045 (1649770) | 1649770..1650075 | - | 306 | WP_000778932.1 | P27 family phage terminase small subunit | - |
| QQO11_RS08050 (1650204) | 1650204..1650518 | - | 315 | WP_000160689.1 | HNH endonuclease | - |
| QQO11_RS08055 (1650675) | 1650675..1651112 | - | 438 | WP_000513703.1 | transcriptional regulator | - |
| QQO11_RS08060 (1651125) | 1651125..1652491 | - | 1367 | Protein_1586 | DEAD/DEAH box helicase | - |
| QQO11_RS08065 (1652472) | 1652472..1652762 | - | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| QQO11_RS08070 (1652896) | 1652896..1653000 | + | 105 | WP_011447017.1 | hypothetical protein | - |
| QQO11_RS08075 (1653103) | 1653103..1655550 | - | 2448 | WP_000884854.1 | virulence-associated E family protein | - |
| QQO11_RS08080 (1655602) | 1655602..1655802 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| QQO11_RS08085 (1655870) | 1655870..1656022 | - | 153 | WP_000595269.1 | transcriptional activator RinB | - |
| QQO11_RS08090 (1656015) | 1656015..1656251 | - | 237 | WP_000483477.1 | hypothetical protein | - |
| QQO11_RS08095 (1656276) | 1656276..1656512 | - | 237 | WP_000195831.1 | DUF1381 domain-containing protein | - |
| QQO11_RS08100 (1656549) | 1656549..1657085 | - | 537 | WP_001066444.1 | dUTPase | - |
| QQO11_RS08105 (1657078) | 1657078..1657488 | - | 411 | WP_000197967.1 | hypothetical protein | - |
| QQO11_RS08110 (1657845) | 1657845..1657970 | - | 126 | Protein_1596 | DUF1024 family protein | - |
| QQO11_RS08115 (1657963) | 1657963..1658271 | - | 309 | WP_031895322.1 | hypothetical protein | - |
| QQO11_RS08120 (1658268) | 1658268..1658614 | - | 347 | Protein_1598 | YopX family protein | - |
| QQO11_RS08125 (1658611) | 1658611..1659012 | - | 402 | WP_285236768.1 | hypothetical protein | - |
| QQO11_RS08130 (1659026) | 1659026..1659274 | - | 249 | WP_078150933.1 | SAV1978 family virulence-associated passenger protein | - |
| QQO11_RS08135 (1659283) | 1659283..1659483 | - | 201 | WP_000235381.1 | hypothetical protein | - |
| QQO11_RS08140 (1659486) | 1659486..1659743 | - | 258 | WP_000111488.1 | DUF3310 domain-containing protein | - |
| QQO11_RS08145 (1659743) | 1659743..1660145 | - | 403 | Protein_1603 | SA1788 family PVL leukocidin-associated protein | - |
| QQO11_RS08150 (1660145) | 1660145..1660330 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| QQO11_RS08155 (1660343) | 1660343..1662295 | - | 1953 | WP_001796208.1 | DNA polymerase | - |
| QQO11_RS08160 (1662364) | 1662364..1662921 | - | 558 | WP_000645045.1 | DUF2815 family protein | - |
| QQO11_RS08165 (1662947) | 1662947..1664113 | - | 1167 | WP_000762532.1 | DUF2800 domain-containing protein | - |
| QQO11_RS08170 (1664110) | 1664110..1664472 | - | 363 | WP_000985983.1 | hypothetical protein | - |
| QQO11_RS08175 (1664487) | 1664487..1664810 | - | 324 | WP_000175000.1 | hypothetical protein | - |
| QQO11_RS08180 (1664889) | 1664889..1665050 | - | 162 | WP_001285962.1 | DUF1270 domain-containing protein | - |
| QQO11_RS08185 (1665062) | 1665062..1665325 | - | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| QQO11_RS08190 (1665350) | 1665350..1665565 | - | 216 | WP_001097555.1 | hypothetical protein | - |
| QQO11_RS08195 (1665620) | 1665620..1665985 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| QQO11_RS08200 (1665954) | 1665954..1666199 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| QQO11_RS08205 (1666255) | 1666255..1666464 | + | 210 | WP_000642492.1 | hypothetical protein | - |
| QQO11_RS08210 (1666454) | 1666454..1666597 | - | 144 | WP_000939498.1 | hypothetical protein | - |
| QQO11_RS08215 (1666626) | 1666626..1667402 | - | 777 | WP_001148544.1 | Rha family transcriptional regulator | - |
| QQO11_RS08220 (1667416) | 1667416..1667652 | - | 237 | WP_001121027.1 | helix-turn-helix transcriptional regulator | - |
| QQO11_RS08225 (1667804) | 1667804..1668118 | + | 315 | WP_000333630.1 | helix-turn-helix transcriptional regulator | - |
| QQO11_RS08230 (1668131) | 1668131..1668592 | + | 462 | WP_000525004.1 | hypothetical protein | Toxin Detail |
| QQO11_RS08235 (1668610) | 1668610..1669194 | + | 585 | WP_000825948.1 | hypothetical protein | - |
| QQO11_RS08240 (1669424) | 1669424..1669570 | + | 147 | WP_001013104.1 | hypothetical protein | - |
| QQO11_RS08245 (1669567) | 1669567..1670181 | - | 615 | WP_000191459.1 | hypothetical protein | - |
| QQO11_RS08250 (1670307) | 1670307..1671512 | + | 1206 | WP_020444721.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| QQO11_RS08255 (1671555) | 1671555..1673582 | - | 2028 | WP_001566047.1 | hypothetical protein | - |
| QQO11_RS08260 (1673575) | 1673575..1674504 | - | 930 | WP_001548912.1 | DUF1672 domain-containing protein | - |
| QQO11_RS08265 (1674749) | 1674749..1676500 | - | 1752 | WP_000987769.1 | two-component system sensor histidine kinase SrrB | - |
| QQO11_RS08270 (1676481) | 1676481..1677206 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| QQO11_RS08275 (1677339) | 1677339..1678076 | - | 738 | WP_000159577.1 | pseudouridine synthase | - |
| QQO11_RS08280 (1678069) | 1678069..1678611 | - | 543 | WP_000368653.1 | SMC-Scp complex subunit ScpB | - |
| QQO11_RS08285 (1678604) | 1678604..1679335 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| QQO11_RS08290 (1679427) | 1679427..1679933 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| QQO11_RS08295 (1680011) | 1680011..1680898 | - | 888 | WP_000447733.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| QQO11_RS08300 (1680947) | 1680947..1681396 | - | 450 | WP_000392691.1 | Fur family transcriptional regulator | - |
| QQO11_RS08305 (1681501) | 1681501..1682043 | - | 543 | WP_000365246.1 | NUDIX hydrolase | - |
| QQO11_RS08310 (1682125) | 1682125..1683033 | + | 909 | WP_001171351.1 | aldo/keto reductase | - |
| QQO11_RS08315 (1683249) | 1683249..1683497 | - | 249 | WP_000995800.1 | hypothetical protein | - |
| QQO11_RS08320 (1683513) | 1683513..1684268 | - | 756 | WP_000678233.1 | SDR family oxidoreductase | - |
| QQO11_RS08325 (1684410) | 1684410..1685225 | + | 816 | WP_000779747.1 | pyrroline-5-carboxylate reductase | - |
| QQO11_RS08330 (1685330) | 1685330..1686250 | - | 921 | WP_000454064.1 | ribonuclease Z | - |
| QQO11_RS08335 (1686563) | 1686563..1688047 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| QQO11_RS08340 (1688277) | 1688277..1689143 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
| QQO11_RS08345 (1689226) | 1689226..1690875 | - | 1650 | WP_001041911.1 | alpha-glucosidase | - |
| QQO11_RS08350 (1690891) | 1690891..1691910 | - | 1020 | WP_000256338.1 | LacI family DNA-binding transcriptional regulator | - |
| QQO11_RS08355 (1691911) | 1691911..1692165 | - | 255 | WP_001791638.1 | hypothetical protein | - |
| QQO11_RS08360 (1692104) | 1692104..1692475 | - | 372 | WP_000413437.1 | VOC family protein | - |
| QQO11_RS08365 (1692694) | 1692694..1694100 | - | 1407 | WP_000193707.1 | NADP-dependent phosphogluconate dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|