MGE detailed information
MGE type: Prophage MGE length: 78160 bp
Accession: NZ_CP126325 Location: 1877294..1955453 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Accession: NZ_CP126325 Location: 1877294..1955453 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN088_RS08840 (1872993) | 1872993..1874450 | + | 1458 | WP_023204221.1 | EmmdR/YeeO family multidrug/toxin efflux MATE transporter | - |
| QN088_RS08850 (1875318) | 1875318..1876772 | + | 1455 | WP_000428191.1 | AMP nucleosidase | - |
| QN088_RS08855 (1877294) | 1877294..1877467 | - | 174 | WP_000957533.1 | hypothetical protein | - |
| QN088_RS08860 (1877515) | 1877515..1877619 | + | 105 | Protein_1733 | DUF520 family protein | - |
| QN088_RS08865 (1877677) | 1877677..1879407 | - | 1731 | WP_023194203.1 | hypothetical protein | - |
| QN088_RS08870 (1879464) | 1879464..1881158 | - | 1695 | WP_284546302.1 | hypothetical protein | VF |
| QN088_RS08875 (1881842) | 1881842..1882120 | - | 279 | Protein_1736 | hypothetical protein ; Integrase | Integrase |
| QN088_RS08880 (1882206) | 1882206..1882673 | - | 468 | Protein_1737 | hypothetical protein ; Integrase | Integrase |
| QN088_RS08885 (1883149) | 1883149..1883622 | - | 474 | WP_001219015.1 | peptidase | - |
| QN088_RS08895 (1884282) | 1884282..1884587 | - | 306 | Protein_1739 | Arm DNA-binding domain-containing protein | - |
| QN088_RS08900 (1885003) | 1885003..1885533 | + | 531 | WP_162920401.1 | hypothetical protein | - |
| QN088_RS08905 (1885673) | 1885673..1887073 | + | 1401 | WP_023194206.1 | hypothetical protein | - |
| QN088_RS08910 (1887066) | 1887066..1887839 | + | 774 | WP_000137444.1 | chromosome partition protein MukE | - |
| QN088_RS08915 (1887836) | 1887836..1889200 | + | 1365 | WP_284546274.1 | hypothetical protein | - |
| QN088_RS08920 (1889264) | 1889264..1892419 | + | 3156 | WP_284546303.1 | chromosome partition protein MukB | - |
| QN088_RS08925 (1892419) | 1892419..1893393 | + | 975 | WP_000548606.1 | DUF2220 family protein | - |
| QN088_RS08930 (1893506) | 1893506..1894282 | + | 777 | WP_023245136.1 | sigma-70 family RNA polymerase sigma factor | - |
| QN088_RS08935 (1894279) | 1894279..1894848 | + | 570 | WP_000977357.1 | hypothetical protein | - |
| QN088_RS08940 (1894841) | 1894841..1898233 | + | 3393 | WP_001000563.1 | UvrD-helicase domain-containing protein | - |
| QN088_RS08945 (1898321) | 1898321..1899076 | + | 756 | WP_023245134.1 | multiubiquitin domain-containing protein | - |
| QN088_RS08950 (1899051) | 1899051..1899899 | + | 849 | WP_284546275.1 | ThiF family adenylyltransferase | - |
| QN088_RS08955 (1899944) | 1899944..1900234 | + | 291 | WP_242617175.1 | hypothetical protein | - |
| QN088_RS08960 (1900228) | 1900228..1900692 | + | 465 | WP_000912782.1 | DUF6527 family protein | - |
| QN088_RS08965 (1901069) | 1901069..1901536 | + | 468 | WP_000201258.1 | hypothetical protein | - |
| QN088_RS08970 (1901536) | 1901536..1901754 | + | 219 | WP_161976074.1 | cell morphology transcriptional regulator XreR2 | - |
| QN088_RS08975 (1902251) | 1902251..1902604 | + | 354 | WP_000269841.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| QN088_RS08980 (1902609) | 1902609..1902911 | + | 303 | WP_000533827.1 | XRE family transcriptional regulator | Antitoxin Detail |
| QN088_RS08985 (1903417) | 1903417..1904301 | + | 885 | WP_284546276.1 | hypothetical protein ; Integrase | Integrase |
| QN088_RS08990 (1905170) | 1905170..1906432 | - | 1263 | WP_000058784.1 | Prophage integrase IntA ; Integrase | Integrase |
| QN088_RS09000 (1906770) | 1906770..1907567 | - | 798 | WP_000598920.1 | DgsA anti-repressor MtfA | - |
| QN088_RS09010 (1907859) | 1907859..1908848 | - | 990 | WP_000532847.1 | hypothetical protein ; Integrase | Integrase |
| QN088_RS09015 (1908850) | 1908850..1909077 | - | 228 | WP_001527041.1 | DUF4224 domain-containing protein | - |
| QN088_RS09020 (1909117) | 1909117..1909686 | - | 570 | WP_001061334.1 | 3'-5' exonuclease | - |
| QN088_RS09025 (1909690) | 1909690..1910523 | - | 834 | WP_118998781.1 | hypothetical protein | - |
| QN088_RS09030 (1910534) | 1910534..1910791 | - | 258 | WP_000224241.1 | hypothetical protein | - |
| QN088_RS09035 (1910793) | 1910793..1911326 | - | 534 | WP_000215886.1 | hypothetical protein | - |
| QN088_RS09040 (1911397) | 1911397..1911936 | - | 540 | WP_000008351.1 | hypothetical protein | - |
| QN088_RS09045 (1912073) | 1912073..1912900 | - | 828 | WP_000080416.1 | DUF2303 family protein | - |
| QN088_RS09050 (1912958) | 1912958..1913329 | - | 372 | WP_000997190.1 | hypothetical protein | - |
| QN088_RS09055 (1913553) | 1913553..1913672 | - | 120 | Protein_1769 | hypothetical protein | - |
| QN088_RS09060 (1913869) | 1913869..1914093 | + | 225 | WP_157969862.1 | hypothetical protein | - |
| QN088_RS09065 (1914056) | 1914056..1914394 | - | 339 | WP_001067432.1 | ClpX C4-type zinc finger protein | - |
| QN088_RS09070 (1914600) | 1914600..1915295 | - | 696 | WP_001020636.1 | helix-turn-helix transcriptional regulator | - |
| QN088_RS09075 (1915393) | 1915393..1915617 | + | 225 | WP_001191666.1 | helix-turn-helix transcriptional regulator | - |
| QN088_RS09080 (1915646) | 1915646..1916200 | + | 555 | WP_023139406.1 | YmfL family putative regulatory protein | - |
| QN088_RS09085 (1916346) | 1916346..1916522 | + | 177 | WP_000281065.1 | DUF4222 domain-containing protein | - |
| QN088_RS09090 (1916541) | 1916541..1916849 | - | 309 | WP_000147078.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| QN088_RS09095 (1916839) | 1916839..1917069 | - | 231 | WP_108429764.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| QN088_RS09100 (1917034) | 1917034..1918047 | + | 1014 | WP_241966668.1 | Rha family phage regulatory protein | - |
| QN088_RS09105 (1918044) | 1918044..1918268 | + | 225 | WP_000620702.1 | hypothetical protein | - |
| QN088_RS09110 (1918265) | 1918265..1919239 | + | 975 | WP_000096532.1 | conserved phage C-terminal domain-containing protein | - |
| QN088_RS09115 (1919236) | 1919236..1919709 | + | 474 | WP_118998778.1 | hypothetical protein | - |
| QN088_RS09120 (1919706) | 1919706..1920587 | + | 882 | WP_118998777.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| QN088_RS09125 (1920596) | 1920596..1920985 | + | 390 | WP_000779148.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QN088_RS09130 (1921002) | 1921002..1921862 | + | 861 | WP_157969861.1 | KilA-N domain-containing protein | - |
| QN088_RS09135 (1921880) | 1921880..1922401 | + | 522 | WP_118998775.1 | hypothetical protein | - |
| QN088_RS09140 (1922412) | 1922412..1923401 | + | 990 | WP_119002085.1 | DUF968 domain-containing protein | - |
| QN088_RS09145 (1923415) | 1923415..1924167 | + | 753 | WP_118998773.1 | antitermination protein | - |
| QN088_RS09150 (1924547) | 1924547..1925290 | + | 744 | WP_240962022.1 | hypothetical protein | - |
| QN088_RS09155 (1925303) | 1925303..1925875 | + | 573 | WP_000765639.1 | hypothetical protein | - |
| QN088_RS09160 (1925964) | 1925964..1926353 | + | 390 | WP_001294874.1 | phage holin family protein | - |
| QN088_RS09165 (1926340) | 1926340..1926621 | + | 282 | WP_020844532.1 | phage holin family protein | - |
| QN088_RS09170 (1926621) | 1926621..1927235 | + | 615 | WP_118998771.1 | glycoside hydrolase family 19 protein | - |
| QN088_RS09175 (1927232) | 1927232..1927711 | + | 480 | WP_001050823.1 | lysis protein | - |
| QN088_RS09180 (1928196) | 1928196..1928519 | - | 324 | WP_000268746.1 | hypothetical protein | - |
| QN088_RS09185 (1928615) | 1928615..1928959 | + | 345 | WP_023891432.1 | HNH endonuclease signature motif containing protein | - |
| QN088_RS09190 (1929092) | 1929092..1929556 | + | 465 | WP_000919034.1 | phage terminase small subunit P27 family | - |
| QN088_RS09195 (1929510) | 1929510..1931252 | + | 1743 | WP_000229716.1 | terminase large subunit | - |
| QN088_RS09200 (1931252) | 1931252..1932556 | + | 1305 | WP_000002707.1 | phage portal protein | - |
| QN088_RS09205 (1932570) | 1932570..1933418 | + | 849 | WP_000039021.1 | Clp protease ClpP | - |
| QN088_RS09210 (1933428) | 1933428..1934645 | + | 1218 | WP_000005722.1 | phage major capsid protein | - |
| QN088_RS09215 (1934689) | 1934689..1934958 | + | 270 | WP_000691031.1 | hypothetical protein | VF |
| QN088_RS09220 (1934958) | 1934958..1935281 | + | 324 | WP_000901160.1 | head-tail connector protein | - |
| QN088_RS09225 (1935293) | 1935293..1935706 | + | 414 | WP_001255650.1 | phage head closure protein | - |
| QN088_RS09230 (1935678) | 1935678..1936190 | + | 513 | WP_023171043.1 | hypothetical protein | - |
| QN088_RS09235 (1936187) | 1936187..1936732 | + | 546 | WP_118998770.1 | hypothetical protein | - |
| QN088_RS09240 (1936754) | 1936754..1936918 | + | 165 | WP_000497755.1 | DUF2635 domain-containing protein | - |
| QN088_RS09245 (1936908) | 1936908..1938404 | + | 1497 | WP_118998769.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| QN088_RS09250 (1938404) | 1938404..1938760 | + | 357 | WP_000515952.1 | phage tail tube protein | - |
| QN088_RS09255 (1938790) | 1938790..1939083 | + | 294 | WP_080249853.1 | phage tail protein | - |
| QN088_RS09260 (1939168) | 1939168..1941093 | + | 1926 | WP_118998768.1 | phage tail tape measure protein | - |
| QN088_RS09265 (1941110) | 1941110..1941559 | + | 450 | WP_284546277.1 | hypothetical protein | - |
| QN088_RS09270 (1941619) | 1941619..1942959 | + | 1341 | WP_080246347.1 | DNA circularization N-terminal domain-containing protein | - |
| QN088_RS09275 (1942956) | 1942956..1944014 | + | 1059 | WP_118998767.1 | baseplate protein | - |
| QN088_RS09280 (1944014) | 1944014..1944547 | + | 534 | WP_024158934.1 | phage baseplate assembly protein V | - |
| QN088_RS09285 (1944552) | 1944552..1944965 | + | 414 | WP_000605051.1 | phage GP46 family protein | - |
| QN088_RS09290 (1944958) | 1944958..1946037 | + | 1080 | WP_000785580.1 | baseplate J/gp47 family protein | - |
| QN088_RS09295 (1946040) | 1946040..1946627 | + | 588 | WP_001207832.1 | DUF2313 domain-containing protein | - |
| QN088_RS09300 (1946614) | 1946614..1948176 | + | 1563 | WP_118998766.1 | phage tail protein | - |
| QN088_RS09305 (1948146) | 1948146..1948751 | + | 606 | WP_022742744.1 | tail fiber assembly protein | - |
| QN088_RS09310 (1948865) | 1948865..1949098 | - | 234 | WP_000836773.1 | cold shock protein YdfK | - |
| QN088_RS09315 (1949173) | 1949173..1949286 | - | 114 | WP_122815478.1 | YnaM/YnfT family protein | - |
| QN088_RS09320 (1949340) | 1949340..1949753 | - | 414 | WP_000842532.1 | hypothetical protein | - |
| QN088_RS09325 (1949750) | 1949750..1949962 | - | 213 | WP_001093793.1 | hypothetical protein | - |
| QN088_RS09330 (1950294) | 1950294..1950437 | + | 144 | Protein_1824 | tail fiber assembly protein | - |
| QN088_RS09335 (1951156) | 1951156..1951317 | + | 162 | WP_001529333.1 | hypothetical protein | - |
| QN088_RS09340 (1951444) | 1951444..1951863 | + | 420 | WP_000394197.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| QN088_RS09345 (1951866) | 1951866..1953134 | + | 1269 | WP_000457663.1 | Y-family DNA polymerase | - |
| QN088_RS09350 (1953589) | 1953589..1953801 | + | 213 | WP_000208509.1 | cold-shock protein | - |
| QN088_RS09355 (1953812) | 1953812..1954000 | + | 189 | WP_024131109.1 | hypothetical protein | - |
| QN088_RS09360 (1954260) | 1954260..1955453 | - | 1194 | WP_284546278.1 | Outer membrane porin N | VF |
| QN088_RS09365 (1956103) | 1956103..1956414 | + | 312 | WP_000107435.1 | cell division protein DrpB | - |
| QN088_RS09370 (1956494) | 1956494..1957189 | + | 696 | WP_000377048.1 | phosphohydrolase | - |
| QN088_RS09375 (1957263) | 1957263..1958690 | + | 1428 | WP_284546279.1 | DNA cytosine methyltransferase | - |
| QN088_RS09380 (1958671) | 1958671..1959141 | + | 471 | WP_000785978.1 | very short patch repair endonuclease | - |
| QN088_RS09385 (1959130) | 1959130..1960050 | - | 921 | WP_001212262.1 | drug/metabolite exporter YedA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|