MGE detailed information
MGE type: Genomic_island MGE length: 10476 bp
Accession: NZ_CP126325 Location: 1028028..1038503 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Accession: NZ_CP126325 Location: 1028028..1038503 Organism: Salmonella enterica subsp. enterica strain HL21 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN088_RS04885 (1024535) | 1024535..1024933 | + | 399 | Protein_957 | cytoplasmic protein | - |
| QN088_RS04890 (1025519) | 1025519..1026187 | + | 669 | WP_023244864.1 | hypothetical protein | - |
| QN088_RS04895 (1026214) | 1026214..1026708 | + | 495 | WP_000424942.1 | hypothetical protein | - |
| QN088_RS04900 (1026953) | 1026953..1027609 | - | 657 | WP_001748710.1 | protein-serine/threonine phosphatase | - |
| QN088_RS04905 (1027842) | 1027842..1028252 | + | 411 | Protein_961 | IS5 family transposase ISEcl3 | Transposase |
| QN088_RS04910 (1028325) | 1028325..1028852 | - | 528 | WP_000971649.1 | GNAT family N-acetyltransferase | Toxin Detail |
| QN088_RS04915 (1028849) | 1028849..1029139 | - | 291 | WP_000855694.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| QN088_RS04920 (1029409) | 1029409..1029587 | - | 179 | Protein_964 | IS3 family transposase | - |
| QN088_RS04925 (1029828) | 1029828..1030154 | + | 327 | WP_000393300.1 | hypothetical protein | - |
| QN088_RS04930 (1030427) | 1030427..1030774 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| QN088_RS04935 (1030759) | 1030759..1031208 | - | 450 | WP_284546217.1 | hypothetical protein | - |
| QN088_RS04940 (1031640) | 1031640..1032083 | - | 444 | WP_000715096.1 | Type 3 secretion system pilotin | VF |
| QN088_RS04945 (1032540) | 1032540..1033190 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| QN088_RS04950 (1033187) | 1033187..1034875 | + | 1689 | WP_000848101.1 | Type 3 secretion system secretin | VF |
| QN088_RS04955 (1034872) | 1034872..1035990 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| QN088_RS04960 (1036015) | 1036015..1038072 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| QN088_RS04965 (1038096) | 1038096..1038503 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| QN088_RS04970 (1038500) | 1038500..1039795 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| QN088_RS04975 (1039773) | 1039773..1040216 | + | 444 | WP_000555884.1 | SPI-1 type III secretion system protein SpaM | - |
| QN088_RS04980 (1040216) | 1040216..1041226 | + | 1011 | WP_284546218.1 | SPI-1 type III secretion system protein SpaN | - |
| QN088_RS04985 (1041226) | 1041226..1042137 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| QN088_RS04990 (1042127) | 1042127..1042801 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| QN088_RS04995 (1042827) | 1042827..1043087 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.006 |