MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 129473 bp
Accession: NZ_CP123252 Location: 1..129473 Organism: Providencia rettgeri strain YZLc5-3 Replicon: plasmid pYZLc5-3_NDM-1_129k
Accession: NZ_CP123252 Location: 1..129473 Organism: Providencia rettgeri strain YZLc5-3 Replicon: plasmid pYZLc5-3_NDM-1_129k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4838_RS20815 (N4838_020885) | 641..1594 | + | 954 | WP_125894518.1 | plasmid segregation protein ParM | - |
| N4838_RS20820 (N4838_020890) | 1599..2069 | + | 471 | WP_284183222.1 | plasmid partitioning/stability family protein | - |
| N4838_RS20825 (N4838_020895) | 1990..2481 | + | 492 | WP_262961062.1 | hypothetical protein | - |
| N4838_RS20830 (N4838_020900) | 3816..4652 | + | 837 | WP_072070757.1 | replication initiation protein | - |
| N4838_RS20835 (N4838_020905) | 4655..4882 | + | 228 | WP_071547973.1 | hypothetical protein | - |
| N4838_RS20840 (N4838_020910) | 5144..6103 | + | 960 | WP_282559904.1 | DNA replication terminus site-binding protein | - |
| N4838_RS20845 (N4838_020920) | 6267..6692 | + | 426 | WP_109910875.1 | hypothetical protein | - |
| N4838_RS20850 (N4838_020925) | 6709..6963 | + | 255 | WP_109910876.1 | hypothetical protein | - |
| N4838_RS20855 (N4838_020930) | 6970..9942 | - | 2973 | WP_001138073.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| N4838_RS20860 (N4838_020935) | 9945..10502 | - | 558 | WP_001162012.1 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| N4838_RS20865 (N4838_020940) | 10808..11821 | - | 1014 | WP_000845054.1 | IS91 family transposase ISAzo26 | Transposase |
| N4838_RS20870 (N4838_020945) | 11966..12463 | + | 498 | WP_001083725.1 | Dihydrofolate reductase | ARG |
| N4838_RS20875 (N4838_020950) | 12575..12865 | + | 291 | WP_001336345.1 | DUF1010 domain-containing protein | - |
| N4838_RS20880 (N4838_020955) | 12871..13709 | + | 839 | Protein_14 | Streptomycin 3''-adenylyltransferase | ARG |
| N4838_RS20885 (N4838_020960) | 13809..13895 | + | 87 | Protein_15 | hypothetical protein | - |
| N4838_RS20890 (N4838_020965) | 14075..14779 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4838_RS20895 (N4838_020970) | 14930..15745 | + | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| N4838_RS20900 (N4838_020975) | 15935..16639 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4838_RS20905 (N4838_020980) | 16753..17529 | + | 777 | WP_001199192.1 | SPBc2 prophage-derived aminoglycoside N(3')-acetyltransferase-like protein YokD | ARG |
| N4838_RS20910 (N4838_020985) | 17758..18783 | + | 1026 | WP_000742814.1 | Hygromycin-B 4-O-kinase | ARG |
| N4838_RS20915 (N4838_020990) | 18858..19097 | + | 240 | Protein_21 | AAC(3) family N-acetyltransferase | - |
| N4838_RS20920 (N4838_020995) | 19205..19957 | - | 753 | WP_000602738.1 | IS6 family transposase ISRle7 | Transposase |
| N4838_RS20925 (N4838_021000) | 20019..21542 | + | 1524 | Protein_23 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| N4838_RS20930 (N4838_021005) | 21602..21730 | + | 129 | WP_032073144.1 | hypothetical protein | - |
| N4838_RS20935 (N4838_021010) | 21768..22253 | + | 486 | WP_006581703.1 | hypothetical protein | - |
| N4838_RS20945 (N4838_021020) | 23630..24445 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| N4838_RS20950 (N4838_021025) | 24532..24774 | + | 243 | Protein_28 | phosphoglucosamine mutase | - |
| N4838_RS20955 (N4838_021030) | 25010..26503 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| N4838_RS20960 (N4838_021035) | 26615..26920 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator CynR | VF |
| N4838_RS20965 (N4838_021040) | 26948..28162 | - | 1215 | WP_000214122.1 | Bicyclomycin resistance protein | ARG |
| N4838_RS20970 (N4838_021045) | 28385..29269 | - | 885 | WP_001447541.1 | DUF3363 domain-containing protein | - |
| N4838_RS20975 (N4838_021050) | 29300..30130 | - | 831 | Protein_33 | IS91 family transposase ISVsa3 | Transposase |
| N4838_RS20980 (N4838_021055) | 30194..30898 | + | 705 | WP_001067784.1 | IS6 family transposase IS1006 | Transposase |
| N4838_RS20985 (N4838_021060) | 30983..31459 | - | 477 | WP_223171565.1 | hypothetical protein | - |
| N4838_RS20990 (N4838_021065) | 31393..34344 | - | 2952 | WP_015344976.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| N4838_RS20995 (N4838_021070) | 34347..34907 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| N4838_RS21000 (N4838_021075) | 35033..35383 | - | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| N4838_RS21005 (N4838_021080) | 35586..36599 | - | 1014 | WP_000845039.1 | IS91 family transposase ISAzo26 | Transposase |
| N4838_RS21010 (N4838_021085) | 36891..37445 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| N4838_RS21015 (N4838_021090) | 37542..37994 | + | 453 | WP_001749986.1 | hypothetical protein | ARG |
| N4838_RS21020 (N4838_021095) | 38217..38564 | + | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| N4838_RS21025 (N4838_021100) | 38558..39397 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| N4838_RS21030 (N4838_021105) | 39802..41343 | + | 1542 | WP_000050481.1 | IS91 family transposase ISVsa3 | Transposase |
| N4838_RS21035 (N4838_021110) | 41576..42082 | + | 507 | Protein_45 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| N4838_RS21040 (N4838_021115) | 42093..42731 | - | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| N4838_RS21045 (N4838_021120) | 42736..43101 | - | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| N4838_RS21050 (N4838_021125) | 43105..43917 | - | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| N4838_RS21055 (N4838_021130) | 44018..44986 | - | 969 | WP_005804963.1 | IS30 family transposase ISAba125 | Transposase |
| N4838_RS21060 (N4838_021135) | 45195..45722 | - | 528 | WP_235909115.1 | phosphotransferase | - |
| N4838_RS21065 (N4838_021140) | 45652..45970 | + | 319 | Protein_51 | SMR family transporter | - |
| N4838_RS21070 (N4838_021145) | 45964..46803 | + | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| N4838_RS21075 (N4838_021150) | 46931..47431 | + | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| N4838_RS21080 (N4838_021155) | 47607..48392 | - | 786 | WP_000983249.1 | IS21 family transposase IS1326 | Transposase |
| N4838_RS21085 (N4838_021160) | 48379..49902 | - | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| N4838_RS21090 (N4838_021165) | 50025..51569 | + | 1545 | WP_000287615.1 | IS3 family transposase IS1353 | Transposase |
| N4838_RS21095 (N4838_021170) | 51620..52480 | - | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| N4838_RS21100 (N4838_021175) | 52483..52710 | - | 228 | Protein_58 | transposase | - |
| N4838_RS21105 (N4838_021180) | 52764..53468 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4838_RS21110 (N4838_021185) | 53531..53791 | + | 261 | Protein_60 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| N4838_RS21115 (N4838_021190) | 53832..55451 | - | 1620 | WP_126616202.1 | IS66 family transposase ISAeme5 | Transposase |
| N4838_RS21120 (N4838_021195) | 55520..55888 | - | 369 | WP_126616199.1 | IS66 family transposase ISAeme5 | Transposase |
| N4838_RS21125 (N4838_021200) | 55888..56196 | - | 309 | WP_126616196.1 | IS66 family transposase ISAeme5 | Transposase |
| N4838_RS21130 (N4838_021205) | 56505..57389 | - | 885 | WP_000155092.1 | hypothetical protein | ARG |
| N4838_RS21135 (N4838_021210) | 57445..58920 | - | 1476 | WP_000052512.1 | putative ABC transporter ATP-binding protein YbiT | ARG |
| N4838_RS21140 (N4838_021215) | 59370..60074 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N4838_RS21145 (N4838_021220) | 60139..61389 | - | 1251 | Protein_67 | transposase | - |
| N4838_RS21150 (N4838_021225) | 61464..62171 | - | 708 | WP_000204520.1 | putative signaling protein | VF |
| N4838_RS21155 (N4838_021230) | 62168..62404 | - | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| N4838_RS21160 (N4838_021235) | 62401..62763 | - | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| N4838_RS21165 (N4838_021240) | 62781..64475 | - | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| N4838_RS21170 (N4838_021245) | 64527..64940 | - | 414 | WP_001435165.1 | organomercurial transporter MerC | - |
| N4838_RS21175 (N4838_021250) | 64985..65260 | - | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| N4838_RS21180 (N4838_021255) | 65274..65624 | - | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| N4838_RS21185 (N4838_021260) | 65696..66130 | + | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| N4838_RS21195 (N4838_021270) | 66977..67294 | + | 318 | Protein_77 | transposase | - |
| N4838_RS21200 (N4838_021275) | 67407..68612 | - | 1206 | WP_001089072.1 | Tetracycline resistance protein, class B | ARG |
| N4838_RS21205 (N4838_021280) | 68694..69317 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| N4838_RS21210 (N4838_021285) | 69295..69570 | - | 276 | Protein_80 | transcriptional regulator | - |
| N4838_RS21215 (N4838_021290) | 69605..70672 | + | 1068 | WP_159227769.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| N4838_RS21220 (N4838_021295) | 71024..72070 | + | 1047 | WP_072070749.1 | ParB/RepB/Spo0J family partition protein | - |
| N4838_RS21225 (N4838_021300) | 72073..72417 | + | 345 | WP_023159966.1 | single-stranded DNA-binding protein | - |
| N4838_RS21230 (N4838_021305) | 72410..72832 | + | 423 | WP_048821775.1 | hypothetical protein | - |
| N4838_RS21235 (N4838_021310) | 72842..73351 | + | 510 | WP_282559889.1 | hypothetical protein | - |
| N4838_RS21240 (N4838_021315) | 73584..73952 | + | 369 | WP_109910890.1 | hypothetical protein | - |
| N4838_RS21245 (N4838_021320) | 74050..74277 | - | 228 | WP_096864993.1 | plasmid partition protein ParG | - |
| N4838_RS21250 (N4838_021325) | 74378..75001 | - | 624 | WP_109910889.1 | AAA family ATPase | - |
| N4838_RS21255 (N4838_021330) | 75271..75516 | + | 246 | WP_096864992.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| N4838_RS21260 (N4838_021335) | 75516..75848 | + | 333 | WP_023159957.1 | endoribonuclease MazF | Toxin Detail |
| N4838_RS21265 (N4838_021340) | 75879..76259 | + | 381 | WP_096864991.1 | hypothetical protein | - |
| N4838_RS21270 (N4838_021345) | 76345..76488 | - | 144 | WP_071547955.1 | Hok/Gef family protein | - |
| N4838_RS21275 (N4838_021350) | 76853..77302 | - | 450 | WP_165126848.1 | hypothetical protein | - |
| N4838_RS21280 (N4838_021355) | 77471..78579 | + | 1109 | WP_226538046.1 | IS3 family transposase ISYal1 | Transposase |
| N4838_RS21285 (N4838_021360) | 79032..80255 | - | 1224 | WP_284183215.1 | hypothetical protein | - |
| N4838_RS21290 (N4838_021365) | 80248..81039 | - | 792 | WP_144138630.1 | SprT family zinc-dependent metalloprotease | - |
| N4838_RS21295 (N4838_021370) | 81042..84338 | - | 3297 | WP_262961059.1 | HsdR family type I site-specific deoxyribonuclease | - |
| N4838_RS21300 (N4838_021375) | 84419..85606 | - | 1188 | WP_144138634.1 | restriction endonuclease subunit S | - |
| N4838_RS21305 (N4838_021380) | 85596..87113 | - | 1518 | WP_144138636.1 | type I restriction-modification system subunit M | - |
| N4838_RS21310 (N4838_021385) | 87124..87723 | - | 600 | WP_159298536.1 | restriction endonuclease subunit S | - |
| N4838_RS21315 (N4838_021390) | 87844..88833 | + | 990 | WP_165126842.1 | nucleotidyltransferase | - |
| N4838_RS21320 (N4838_021395) | 88811..89755 | + | 945 | WP_144138642.1 | S-4TM family putative pore-forming effector | - |
| N4838_RS21325 (N4838_021400) | 89757..91166 | - | 1410 | WP_165126839.1 | TnsD family Tn7-like transposition protein | - |
| N4838_RS21330 (N4838_021405) | 91179..92639 | - | 1461 | WP_144138645.1 | ATP-binding protein | - |
| N4838_RS21335 (N4838_021410) | 92636..94772 | - | 2137 | Protein_105 | transposase | - |
| N4838_RS21340 (N4838_021415) | 94762..95589 | - | 828 | WP_165126836.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| N4838_RS21345 (N4838_021420) | 95877..96830 | + | 954 | WP_023159956.1 | site-specific integrase | - |
| N4838_RS21350 (N4838_021425) | 96844..97662 | + | 819 | WP_262961060.1 | DUF4365 domain-containing protein | - |
| N4838_RS21355 (N4838_021430) | 97683..98690 | + | 1008 | WP_048607639.1 | hypothetical protein | - |
| N4838_RS21360 (N4838_021435) | 99183..99932 | + | 750 | WP_071547986.1 | signal peptidase I | - |
| N4838_RS21365 (N4838_021440) | 100012..100269 | + | 258 | WP_206091104.1 | hypothetical protein | - |
| N4838_RS21375 (N4838_021455) | 101825..102235 | - | 411 | WP_206086781.1 | IS200-IS605 family transposase IS606 | Transposase |
| N4838_RS21380 (N4838_021460) | 102290..103495 | + | 1206 | WP_284183216.1 | IS200-IS605 family transposase ISAba30 | Transposase |
| N4838_RS21385 (N4838_021465) | 103539..103883 | + | 345 | Protein_115 | IS91 family transposase ISSde12 | Transposase |
| N4838_RS21390 (N4838_021470) | 104162..104425 | - | 264 | WP_019281448.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| N4838_RS21395 (N4838_021475) | 104418..104672 | - | 255 | WP_009836585.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| N4838_RS21400 (N4838_021480) | 105033..106007 | + | 975 | WP_223674028.1 | IS5 family transposase IS5D | Transposase |
| N4838_RS21405 (N4838_021485) | 106152..106319 | - | 168 | Protein_119 | glycerol dehydratase reactivase beta/small subunit family protein | - |
| N4838_RS21410 (N4838_021490) | 106336..107499 | - | 1164 | WP_016243884.1 | 1,3-propanediol dehydrogenase | VF |
| N4838_RS21415 (N4838_021495) | 107644..107936 | - | 293 | Protein_121 | hypothetical protein | - |
| N4838_RS21420 (N4838_021500) | 108033..108353 | + | 321 | WP_206086774.1 | IS66 family transposase ISVa11 | Transposase |
| N4838_RS21425 (N4838_021505) | 108563..108724 | - | 162 | Protein_123 | transposase | - |
| N4838_RS21430 (N4838_021510) | 108753..109085 | - | 333 | WP_125894547.1 | hypothetical protein | - |
| N4838_RS21435 (N4838_021515) | 109277..110347 | - | 1071 | WP_125894545.1 | saccharopine dehydrogenase NADP-binding domain-containing protein | - |
| N4838_RS21440 (N4838_021520) | 110413..111345 | - | 933 | WP_206086773.1 | NAD-dependent epimerase/dehydratase family protein | - |
| N4838_RS21445 (N4838_021525) | 111538..112044 | + | 507 | WP_206086772.1 | hypothetical protein | - |
| N4838_RS21450 (N4838_021530) | 112118..113002 | - | 885 | WP_206086771.1 | MurR/RpiR family transcriptional regulator | - |
| N4838_RS21455 (N4838_021535) | 113215..113994 | - | 780 | WP_206086770.1 | hypothetical protein | - |
| N4838_RS21460 (N4838_021540) | 113916..115046 | - | 1131 | WP_284183218.1 | porin | - |
| N4838_RS21465 (N4838_021545) | 115695..117056 | + | 1362 | WP_223674027.1 | C4-dicarboxylate transporter DcuC | - |
| N4838_RS21470 (N4838_021550) | 117067..118431 | + | 1365 | WP_206086767.1 | adenylosuccinate lyase family protein | - |
| N4838_RS21475 (N4838_021555) | 118376..120103 | + | 1728 | WP_223715754.1 | NAD-dependent malic enzyme | - |
| N4838_RS21480 (N4838_021560) | 120238..120747 | - | 510 | WP_125894536.1 | N-acetyltransferase | - |
| N4838_RS21485 (N4838_021565) | 120750..121922 | - | 1173 | WP_206086766.1 | MerR family transcriptional regulator | - |
| N4838_RS21490 (N4838_021570) | 122028..122186 | + | 159 | Protein_136 | helix-turn-helix domain-containing protein | - |
| N4838_RS21495 (N4838_021575) | 122807..123660 | + | 854 | Protein_137 | hypothetical protein | - |
| N4838_RS21500 (N4838_021580) | 123652..123996 | - | 345 | Protein_138 | transposase | - |
| N4838_RS21505 (N4838_021585) | 124016..124921 | - | 906 | WP_201287957.1 | IS66 family transposase ISAs21 | Transposase |
| N4838_RS21510 (N4838_021590) | 125021..125332 | - | 312 | WP_125894530.1 | hypothetical protein | - |
| N4838_RS21515 (N4838_021595) | 125332..125892 | - | 561 | WP_125894528.1 | FlhC family transcriptional regulator | - |
| N4838_RS21520 (N4838_021600) | 125883..126443 | - | 561 | WP_282558505.1 | hypothetical protein | - |
| N4838_RS21525 (N4838_021605) | 126433..126981 | - | 549 | WP_166268121.1 | transglycosylase SLT domain-containing protein | - |
| N4838_RS21530 (N4838_021610) | 127468..128013 | + | 546 | WP_282558506.1 | hypothetical protein | - |
| N4838_RS21535 (N4838_021615) | 128261..128680 | - | 420 | WP_125894522.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|