MGE detailed information
MGE type: Conjugative plasmid MGE length: 115670 bp
Accession: NZ_CP123246 Location: 1..115670 Organism: Escherichia coli strain YZMc3-1 Replicon: plasmid pYZMc3-1_115k
Accession: NZ_CP123246 Location: 1..115670 Organism: Escherichia coli strain YZMc3-1 Replicon: plasmid pYZMc3-1_115k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4691_RS24070 (1) | 1..978 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| N4691_RS24075 (1263) | 1263..2003 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| N4691_RS24080 (2124) | 2124..2312 | - | 189 | WP_001312821.1 | hypothetical protein | - |
| N4691_RS24085 (2686) | 2686..3588 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| N4691_RS24090 (3657) | 3657..4766 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| N4691_RS24095 (5199) | 5199..6152 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| N4691_RS24100 (7449) | 7449..7628 | - | 180 | Protein_6 | integrase core domain-containing protein | - |
| N4691_RS24105 (7767) | 7767..8980 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| N4691_RS24110 (9128) | 9128..9396 | - | 269 | Protein_8 | IS3 family transposase ISLad1 | Transposase |
| N4691_RS24115 (9453) | 9453..10150 | + | 698 | WP_224158172.1 | IS1-like element IS1A family transposase | - |
| N4691_RS24120 (10228) | 10228..11617 | - | 1390 | Protein_10 | ISNCY family transposase ISKpn21 | Transposase |
| N4691_RS24125 (11927) | 11927..12076 | - | 150 | Protein_11 | IS3 family transposase IS2 | Transposase |
| N4691_RS24130 (12254) | 12254..13447 | - | 1194 | WP_000450494.1 | GTP-binding protein | - |
| N4691_RS24135 (14670) | 14670..15906 | - | 1237 | Protein_13 | IS3 family transposase IS2 | Transposase |
| N4691_RS24140 (16533) | 16533..16826 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| N4691_RS24145 (16884) | 16884..17083 | - | 200 | Protein_15 | lysis protein | - |
| N4691_RS24150 (17637) | 17637..18663 | + | 1027 | Protein_16 | IS481 family transposase ISKpn28 | Transposase |
| N4691_RS24155 (19974) | 19974..21089 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| N4691_RS24160 (21229) | 21229..24888 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| N4691_RS24165 (24992) | 24992..26221 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| N4691_RS24170 (26306) | 26306..27262 | + | 957 | WP_064055648.1 | hypothetical protein | VF |
| N4691_RS24175 (27307) | 27307..29484 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| N4691_RS24180 (29719) | 29719..30416 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| N4691_RS24185 (30913) | 30913..34728 | - | 3816 | WP_223364258.1 | hypothetical protein | - |
| N4691_RS24190 (34954) | 34954..35139 | + | 186 | Protein_24 | hypothetical protein | - |
| N4691_RS24195 (35157) | 35157..35504 | - | 348 | WP_000142450.1 | DUF6404 family protein | - |
| N4691_RS24200 (35806) | 35806..36288 | - | 483 | WP_001311056.1 | hypothetical protein | - |
| N4691_RS24205 (36405) | 36405..37253 | - | 849 | WP_023154360.1 | 3'-5' exonuclease | - |
| N4691_RS24210 (37299) | 37299..37577 | - | 279 | WP_097309154.1 | type II toxin-antitoxin system toxin YacB | - |
| N4691_RS24215 (37687) | 37687..38403 | - | 717 | Protein_29 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| N4691_RS24220 (38437) | 38437..41220 | - | 2784 | Protein_30 | Tn3 family transposase TnpA_Tn3 | Transposase |
| N4691_RS24225 (41285) | 41285..41578 | + | 294 | WP_116961751.1 | WbuC family cupin fold metalloprotein | - |
| N4691_RS24230 (41625) | 41625..42500 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| N4691_RS24235 (42756) | 42756..43043 | - | 288 | Protein_33 | transposase | - |
| N4691_RS24240 (43098) | 43098..43802 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4691_RS24245 (43870) | 43870..44067 | - | 198 | Protein_35 | EAL domain-containing protein | - |
| N4691_RS24250 (44270) | 44270..45283 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| N4691_RS24255 (45441) | 45441..45914 | + | 474 | WP_001389366.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | - |
| N4691_RS24265 (46883) | 46883..47284 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| N4691_RS24270 (47217) | 47217..47474 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| N4691_RS24275 (47567) | 47567..48220 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| N4691_RS24280 (48318) | 48318..48458 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| N4691_RS24285 (49159) | 49159..50016 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| N4691_RS24290 (50009) | 50009..50491 | - | 483 | WP_241225813.1 | hypothetical protein | - |
| N4691_RS24295 (50484) | 50484..50531 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| N4691_RS24300 (50522) | 50522..50773 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| N4691_RS24305 (50790) | 50790..51047 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| N4691_RS24310 (51331) | 51331..51480 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (51524) | 51524..51585 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (51524) | 51524..51585 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (51524) | 51524..51585 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (51524) | 51524..51585 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| N4691_RS24315 (51841) | 51841..51915 | - | 75 | Protein_49 | endonuclease | - |
| N4691_RS24320 (52161) | 52161..52373 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| N4691_RS24325 (52509) | 52509..53069 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| N4691_RS24330 (53172) | 53172..54032 | - | 861 | WP_000704514.1 | Quorum-quenching protein AidA | VF |
| N4691_RS24335 (54091) | 54091..54837 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| N4691_RS24340 (54857) | 54857..55207 | - | 351 | WP_284183077.1 | protein traI | - |
| N4691_RS24345 (55232) | 55232..55936 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| N4691_RS24350 (55982) | 55982..60745 | - | 4764 | Protein_56 | Multifunctional conjugation protein TraI | Relaxase |
| N4691_RS24355 (60827) | 60827..61054 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| N4691_RS24360 (61054) | 61054..61452 | + | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| N4691_RS24365 (61461) | 61461..63614 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| N4691_RS24370 (63867) | 63867..64598 | - | 732 | WP_023565183.1 | conjugal transfer complement resistance protein TraT | - |
| N4691_RS24375 (64630) | 64630..65127 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| N4691_RS24380 (65143) | 65143..67965 | - | 2823 | WP_001007018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| N4691_RS24385 (67962) | 67962..69335 | - | 1374 | WP_001517790.1 | conjugal transfer pilus assembly protein TraH | - |
| N4691_RS24390 (69335) | 69335..69715 | - | 381 | WP_001389370.1 | F-type conjugal transfer protein TrbF | - |
| N4691_RS24395 (69702) | 69702..70043 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| N4691_RS24400 (69973) | 69973..70518 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| N4691_RS24405 (70505) | 70505..70789 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| N4691_RS24410 (70870) | 70870..71184 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| N4691_RS24415 (71186) | 71186..71533 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| N4691_RS24420 (71549) | 71549..72292 | - | 744 | WP_001030393.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| N4691_RS24425 (72285) | 72285..72542 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| N4691_RS24430 (72569) | 72569..74377 | - | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| N4691_RS24435 (74374) | 74374..75012 | - | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| N4691_RS24440 (75021) | 75021..76013 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| N4691_RS24445 (76010) | 76010..76642 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| N4691_RS24450 (76639) | 76639..77025 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| N4691_RS24455 (77022) | 77022..79649 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| N4691_RS24460 (79809) | 79809..80030 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| N4691_RS24465 (80165) | 80165..80680 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| N4691_RS24470 (80677) | 80677..80928 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| N4691_RS24475 (80940) | 80940..81137 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| N4691_RS24480 (81124) | 81124..81714 | - | 591 | WP_001376242.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| N4691_RS24485 (81704) | 81704..83131 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| N4691_RS24490 (83131) | 83131..83863 | - | 733 | Protein_84 | type-F conjugative transfer system secretin TraK | - |
| N4691_RS24495 (83850) | 83850..84416 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| N4691_RS24500 (84438) | 84438..84749 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| N4691_RS24505 (84764) | 84764..85129 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| N4691_RS24510 (85162) | 85162..85563 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| N4691_RS24515 (85656) | 85656..86345 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| N4691_RS24520 (86532) | 86532..86915 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| N4691_RS24525 (87248) | 87248..87838 | + | 591 | WP_001376243.1 | hypothetical protein | VF |
| N4691_RS24530 (88135) | 88135..88956 | - | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| N4691_RS24535 (89074) | 89074..89361 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| N4691_RS24540 (89386) | 89386..89592 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| N4691_RS24545 (89662) | 89662..89834 | + | 173 | Protein_95 | hypothetical protein | - |
| N4691_RS24550 (89832) | 89832..90062 | - | 231 | WP_071586998.1 | hypothetical protein | - |
| N4691_RS24555 (90282) | 90282..90407 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| N4691_RS24560 (90349) | 90349..90498 | - | 150 | Protein_98 | plasmid maintenance protein Mok | - |
| - (90484) | 90484..90708 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (90484) | 90484..90708 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (90484) | 90484..90708 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (90484) | 90484..90708 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| N4691_RS24565 (90520) | 90520..90708 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| N4691_RS24570 (90677) | 90677..91439 | - | 763 | Protein_100 | plasmid SOS inhibition protein A | - |
| N4691_RS24575 (91436) | 91436..91870 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| N4691_RS24580 (91925) | 91925..92122 | - | 198 | Protein_102 | hypothetical protein | - |
| N4691_RS24585 (92150) | 92150..92383 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| N4691_RS24590 (92451) | 92451..92990 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| N4691_RS24595 (93016) | 93016..93222 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| N4691_RS24600 (93292) | 93292..93372 | + | 81 | Protein_106 | hypothetical protein | - |
| N4691_RS24605 (93555) | 93555..93724 | - | 170 | Protein_107 | hypothetical protein | - |
| N4691_RS24610 (94318) | 94318..95289 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| N4691_RS24615 (95289) | 95289..96455 | - | 1167 | WP_001238646.1 | hypothetical protein | VF |
| N4691_RS24625 (97937) | 97937..100138 | - | 2202 | WP_241225455.1 | Ferric aerobactin receptor | VF |
| N4691_RS24630 (100164) | 100164..101497 | - | 1334 | Protein_112 | L-lysine N6-monooxygenase | VF |
| N4691_RS24635 (101494) | 101494..103236 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| N4691_RS24640 (103236) | 103236..104183 | - | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| N4691_RS24645 (104184) | 104184..105908 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| N4691_RS24650 (106044) | 106044..107237 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| N4691_RS24655 (107617) | 107617..107997 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| N4691_RS24660 (108338) | 108338..108751 | - | 414 | Protein_118 | phosphopyruvate hydratase | - |
| N4691_RS24665 (108749) | 108749..109006 | + | 258 | Protein_119 | Tn3 family transposase | - |
| N4691_RS24670 (109240) | 109240..110097 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| N4691_RS24675 (110094) | 110094..110951 | - | 858 | WP_000992806.1 | Manganese transport system membrane protein MntB | ARG |
| N4691_RS24680 (110948) | 110948..111775 | - | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| N4691_RS24685 (111775) | 111775..112689 | - | 915 | WP_000949004.1 | putative periplasmic iron-binding protein | VF |
| N4691_RS24690 (113045) | 113045..113742 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| N4691_RS24695 (113922) | 113922..114435 | - | 514 | Protein_125 | DUF4113 domain-containing protein | - |
| N4691_RS24700 (114496) | 114496..114600 | - | 105 | Protein_126 | AAA family ATPase | - |
| N4691_RS24705 (114602) | 114602..114925 | - | 324 | Protein_127 | IS21 family transposase IS21 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|