MGE detailed information
MGE type: Conjugative plasmid MGE length: 93447 bp
Accession: NZ_CP122770 Location: 1..93447 Organism: Escherichia coli strain ETEC1738 Replicon: plasmid unnamed2
Accession: NZ_CP122770 Location: 1..93447 Organism: Escherichia coli strain ETEC1738 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY55_RS28935 (1) | 1..1209 | + | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| QDY55_RS28940 (1228) | 1228..2298 | + | 1071 | WP_000151576.1 | IncI1-type conjugal transfer protein TrbB | - |
| QDY55_RS28945 (2291) | 2291..4582 | + | 2292 | WP_072107381.1 | F-type conjugative transfer protein TrbC | - |
| QDY55_RS28950 (4619) | 4619..7318 | - | 2700 | WP_282870934.1 | Protein TraI | Relaxase |
| QDY55_RS28955 (7329) | 7329..7661 | - | 333 | WP_001281051.1 | plasmid mobilization protein MobA | - |
| QDY55_RS28960 (7893) | 7893..8228 | + | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| QDY55_RS28965 (8314) | 8314..9162 | - | 849 | WP_096961243.1 | DUF4942 domain-containing protein | - |
| QDY55_RS28970 (9743) | 9743..9994 | + | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| QDY55_RS28975 (10025) | 10025..10207 | - | 183 | WP_000150323.1 | hypothetical protein | - |
| QDY55_RS28980 (10271) | 10271..11209 | - | 939 | WP_000038336.1 | Recombination-promoting nuclease RpnA | VF |
| QDY55_RS28985 (11274) | 11274..11540 | - | 267 | WP_001247862.1 | hypothetical protein | - |
| QDY55_RS28990 (11632) | 11632..12066 | - | 435 | WP_000218863.1 | hypothetical protein | - |
| QDY55_RS28995 (12795) | 12795..13295 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| QDY55_RS29000 (13743) | 13743..14918 | - | 1176 | WP_263629846.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| QDY55_RS29005 (15048) | 15048..15767 | - | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| QDY55_RS29010 (15764) | 15764..16198 | - | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| QDY55_RS29015 (16253) | 16253..18211 | - | 1959 | WP_052985242.1 | ParB/RepB/Spo0J family partition protein | - |
| QDY55_RS29020 (18270) | 18270..18503 | - | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| QDY55_RS29025 (18561) | 18561..19088 | - | 528 | WP_001276125.1 | single-stranded DNA-binding protein | - |
| QDY55_RS29030 (19457) | 19457..19525 | + | 69 | Protein_19 | pilus protein | - |
| QDY55_RS29035 (20256) | 20256..21923 | + | 1668 | WP_052991863.1 | group II intron reverse transcriptase/maturase | - |
| QDY55_RS29040 (22202) | 22202..22393 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| QDY55_RS29045 (22390) | 22390..22812 | - | 423 | WP_000271741.1 | DUF1380 family protein | - |
| QDY55_RS29050 (22859) | 22859..23284 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| QDY55_RS29055 (23701) | 23701..24471 | - | 771 | WP_001434682.1 | hypothetical protein | - |
| QDY55_RS29060 (24522) | 24522..24988 | - | 467 | Protein_25 | DUF1380 family protein | - |
| QDY55_RS29065 (24969) | 24969..25190 | - | 222 | WP_001104885.1 | hypothetical protein | - |
| QDY55_RS29070 (25191) | 25191..25874 | - | 684 | WP_021513974.1 | DNA methylase | - |
| QDY55_RS29075 (25950) | 25950..26255 | - | 306 | WP_015058890.1 | hypothetical protein | - |
| QDY55_RS29080 (26259) | 26259..27161 | - | 903 | WP_001442863.1 | DUF1281 domain-containing protein | - |
| QDY55_RS29085 (27579) | 27579..27827 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
| QDY55_RS29090 (27824) | 27824..28261 | + | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| QDY55_RS29095 (28261) | 28261..29535 | + | 1275 | WP_053266915.1 | Y-family DNA polymerase | - |
| QDY55_RS29100 (29537) | 29537..29953 | - | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| QDY55_RS29105 (29946) | 29946..30925 | - | 980 | Protein_34 | plasmid segregation protein ParM | - |
| QDY55_RS29110 (31339) | 31339..31647 | - | 309 | WP_000030199.1 | hypothetical protein | - |
| QDY55_RS29115 (31734) | 31734..32378 | - | 645 | WP_001144036.1 | ParA family protein | - |
| QDY55_RS29120 (32558) | 32558..33337 | - | 780 | WP_001164198.1 | site-specific integrase | - |
| QDY55_RS29125 (33339) | 33339..33752 | - | 414 | WP_021513973.1 | hypothetical protein | - |
| QDY55_RS29130 (34321) | 34321..34578 | + | 258 | WP_000371885.1 | hypothetical protein | - |
| QDY55_RS29135 (34578) | 34578..35168 | + | 591 | WP_225236279.1 | hypothetical protein | - |
| QDY55_RS29140 (35186) | 35186..35449 | - | 264 | WP_282870946.1 | DUF6404 family protein | - |
| QDY55_RS29145 (35496) | 35496..37067 | - | 1572 | WP_000381442.1 | IS66 family transposase IS679 | Transposase |
| QDY55_RS29150 (37087) | 37087..37434 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| QDY55_RS29155 (37434) | 37434..38084 | - | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| QDY55_RS29160 (38374) | 38374..38709 | + | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| QDY55_RS29165 (38731) | 38731..40611 | - | 1881 | WP_001283343.1 | colicin Ia central receptor-binding domain-containing protein | - |
| QDY55_RS29170 (40890) | 40890..42236 | - | 1347 | WP_032082920.1 | protein YagA | - |
| QDY55_RS29175 (42590) | 42590..43183 | + | 594 | WP_000517696.1 | ProQ/FINO family protein | - |
| QDY55_RS29180 (43465) | 43465..44052 | - | 588 | WP_024189984.1 | serine acetyltransferase | - |
| QDY55_RS29185 (44397) | 44397..44693 | + | 297 | WP_001419651.1 | hypothetical protein | - |
| QDY55_RS29190 (44889) | 44889..45167 | - | 279 | WP_013009346.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| QDY55_RS29195 (45167) | 45167..45436 | - | 270 | WP_000079932.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| QDY55_RS29200 (45491) | 45491..45649 | - | 159 | WP_000841008.1 | hypothetical protein | - |
| QDY55_RS29205 (46344) | 46344..47375 | - | 1032 | WP_001690254.1 | plasmid replication initiator RepA | - |
| QDY55_RS29210 (48333) | 48333..48611 | + | 279 | WP_219065241.1 | ash family protein | - |
| QDY55_RS29215 (48529) | 48529..48816 | + | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| QDY55_RS29220 (49258) | 49258..49791 | + | 534 | WP_024185161.1 | transcription termination/antitermination NusG family protein | - |
| QDY55_RS29225 (50045) | 50045..50728 | + | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| QDY55_RS29230 (50900) | 50900..51274 | + | 375 | WP_001136188.1 | PilI type IV pilus biogenesis protein | - |
| QDY55_RS29235 (52246) | 52246..53313 | + | 1068 | WP_282870931.1 | hypothetical protein | VF |
| QDY55_RS29240 (53313) | 53313..53750 | + | 438 | WP_000539807.1 | hypothetical protein | VF |
| QDY55_RS29245 (53764) | 53764..55446 | + | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| QDY55_RS29250 (55439) | 55439..56734 | + | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| QDY55_RS29255 (56721) | 56721..57173 | + | 453 | WP_001247337.1 | hypothetical protein | VF |
| QDY55_RS29260 (57184) | 57184..58737 | + | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| QDY55_RS29265 (58750) | 58750..59835 | + | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| QDY55_RS29270 (59852) | 59852..60466 | + | 615 | WP_000908226.1 | hypothetical protein | VF |
| QDY55_RS29275 (60476) | 60476..61036 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| QDY55_RS29280 (61021) | 61021..61677 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| QDY55_RS29285 (61665) | 61665..63101 | + | 1437 | WP_000527428.1 | hypothetical protein | VF |
| QDY55_RS29290 (64734) | 64734..65888 | + | 1155 | WP_001139958.1 | site-specific integrase | - |
| QDY55_RS29295 (66039) | 66039..66863 | + | 825 | WP_001545755.1 | conjugal transfer protein TraE | - |
| QDY55_RS29300 (66949) | 66949..68151 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| QDY55_RS29305 (68211) | 68211..68795 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| QDY55_RS29310 (69190) | 69190..69648 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| QDY55_RS29315 (69645) | 69645..70463 | + | 819 | WP_000646095.1 | hypothetical protein | VF |
| QDY55_RS29320 (70460) | 70460..71608 | + | 1149 | WP_001024974.1 | putative protein YggR | VF |
| QDY55_RS29325 (71605) | 71605..71895 | + | 291 | WP_001299214.1 | hypothetical protein | - |
| QDY55_RS29330 (71910) | 71910..72461 | + | 552 | WP_000014584.1 | Phospholipase D | VF |
| QDY55_RS29335 (72551) | 72551..76318 | + | 3768 | WP_052940082.1 | DUF5710 domain-containing protein | - |
| QDY55_RS29340 (76336) | 76336..76683 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| QDY55_RS29345 (76680) | 76680..77372 | + | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| QDY55_RS29350 (77383) | 77383..78366 | + | 984 | WP_001191879.1 | hypothetical protein | VF |
| QDY55_RS29355 (78369) | 78369..79658 | + | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| QDY55_RS29360 (79658) | 79658..80362 | + | 705 | WP_052940081.1 | IncI1-type conjugal transfer protein TraP | - |
| QDY55_RS29365 (80362) | 80362..80889 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| QDY55_RS29370 (80940) | 80940..81344 | + | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| QDY55_RS29375 (81408) | 81408..81596 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| QDY55_RS29380 (81580) | 81580..82380 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| QDY55_RS29385 (82470) | 82470..85514 | + | 3045 | WP_052940080.1 | IncI1-type conjugal transfer protein TraU | - |
| QDY55_RS29390 (85514) | 85514..86128 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| QDY55_RS29395 (86095) | 86095..87297 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| QDY55_RS29400 (87326) | 87326..87910 | + | 585 | WP_001037985.1 | IncI1-type conjugal transfer protein TraX | - |
| QDY55_RS29405 (88007) | 88007..90175 | + | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| QDY55_RS29410 (90246) | 90246..90908 | + | 663 | WP_000644794.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| QDY55_RS29415 (90980) | 90980..91189 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| QDY55_RS29420 (91581) | 91581..91757 | + | 177 | WP_001054900.1 | hypothetical protein | - |
| - (92243) | 92243..92294 | + | 52 | NuclAT_1 | - | - |
| - (92243) | 92243..92294 | + | 52 | NuclAT_1 | - | - |
| - (92243) | 92243..92294 | + | 52 | NuclAT_1 | - | - |
| - (92243) | 92243..92294 | + | 52 | NuclAT_1 | - | - |
| QDY55_RS29425 (92681) | 92681..92932 | + | 252 | WP_001291965.1 | hypothetical protein | - |
| QDY55_RS29430 (93004) | 93004..93156 | - | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| - (93206) | 93206..93268 | + | 63 | NuclAT_0 | - | - |
| - (93206) | 93206..93268 | + | 63 | NuclAT_0 | - | - |
| - (93206) | 93206..93268 | + | 63 | NuclAT_0 | - | - |
| - (93206) | 93206..93268 | + | 63 | NuclAT_0 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|