MGE detailed information
MGE type: Conjugative plasmid MGE length: 67634 bp
Accession: NZ_CP122686 Location: 1..67634 Organism: Escherichia coli strain ETEC4067 Replicon: plasmid unnamed1
Accession: NZ_CP122686 Location: 1..67634 Organism: Escherichia coli strain ETEC4067 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX30_RS25045 (1) | 1..516 | + | 516 | WP_087851932.1 | type IV conjugative transfer system lipoprotein TraV | - |
| QDX30_RS25050 (651) | 651..872 | + | 222 | WP_069040908.1 | conjugal transfer protein TraR | - |
| QDX30_RS25055 (1032) | 1032..3659 | + | 2628 | WP_282843143.1 | type IV secretion system protein TraC | - |
| QDX30_RS25060 (3656) | 3656..4042 | + | 387 | WP_021514856.1 | type-F conjugative transfer system protein TrbI | - |
| QDX30_RS25065 (4039) | 4039..4671 | + | 633 | WP_001203745.1 | type-F conjugative transfer system protein TraW | - |
| QDX30_RS25070 (4668) | 4668..5660 | + | 993 | WP_000830839.1 | conjugal transfer pilus assembly protein TraU | - |
| QDX30_RS25075 (5686) | 5686..6147 | + | 462 | WP_000277845.1 | hypothetical protein | - |
| QDX30_RS25080 (6177) | 6177..6629 | + | 453 | WP_001349502.1 | hypothetical protein | - |
| QDX30_RS25085 (6657) | 6657..7295 | + | 639 | WP_001104087.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| QDX30_RS25090 (7292) | 7292..9142 | + | 1851 | WP_000827530.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| QDX30_RS25095 (9169) | 9169..9426 | + | 258 | WP_000864338.1 | conjugal transfer protein TrbE | - |
| QDX30_RS25100 (9419) | 9419..10162 | + | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| QDX30_RS25105 (10178) | 10178..10525 | + | 348 | WP_001287908.1 | conjugal transfer protein TrbA | - |
| QDX30_RS25110 (10527) | 10527..10841 | - | 315 | WP_000415566.1 | protein ArtA | - |
| QDX30_RS25115 (10922) | 10922..11206 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| QDX30_RS25120 (11193) | 11193..11738 | + | 546 | WP_042634328.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| QDX30_RS25125 (11668) | 11668..12009 | + | 342 | WP_071528036.1 | P-type conjugative transfer protein TrbJ | - |
| QDX30_RS25130 (11996) | 11996..12388 | + | 393 | WP_000662237.1 | F-type conjugal transfer protein TrbF | - |
| QDX30_RS25135 (12375) | 12375..13748 | + | 1374 | WP_042634326.1 | conjugal transfer pilus assembly protein TraH | - |
| QDX30_RS25140 (13745) | 13745..16567 | + | 2823 | WP_021532657.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| QDX30_RS25145 (16583) | 16583..17068 | + | 486 | WP_077819290.1 | surface exclusion protein | - |
| QDX30_RS25150 (17117) | 17117..17848 | + | 732 | WP_000782454.1 | conjugal transfer complement resistance protein TraT | - |
| QDX30_RS25155 (18051) | 18051..18788 | + | 738 | WP_069199865.1 | hypothetical protein | - |
| QDX30_RS25160 (18839) | 18839..21172 | + | 2334 | WP_282843144.1 | Coupling protein TraD | VF |
| QDX30_RS25165 (21172) | 21172..26442 | + | 5271 | WP_282843145.1 | Multifunctional conjugation protein TraI | Relaxase |
| QDX30_RS25170 (26462) | 26462..27208 | + | 747 | WP_000205711.1 | conjugal transfer pilus acetylase TraX | - |
| QDX30_RS25175 (27267) | 27267..28127 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| QDX30_RS25180 (28230) | 28230..28790 | + | 561 | WP_000840464.1 | fertility inhibition protein FinO | - |
| QDX30_RS25185 (28921) | 28921..29130 | + | 210 | WP_001297500.1 | hypothetical protein | - |
| QDX30_RS25190 (29542) | 29542..30168 | + | 627 | WP_000794191.1 | NYN domain-containing protein | - |
| QDX30_RS25195 (30320) | 30320..30910 | + | 591 | WP_001384253.1 | DUF2726 domain-containing protein | - |
| QDX30_RS25200 (31065) | 31065..31529 | + | 465 | WP_000872610.1 | hypothetical protein | - |
| QDX30_RS25205 (31786) | 31786..31935 | + | 150 | WP_001378818.1 | Hok/Gef family protein | - |
| QDX30_RS25210 (32219) | 32219..32467 | + | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| QDX30_RS25215 (32711) | 32711..32785 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| QDX30_RS25220 (32778) | 32778..33635 | + | 858 | WP_282843146.1 | incFII family plasmid replication initiator RepA | - |
| QDX30_RS25225 (34548) | 34548..34817 | + | 270 | WP_001395444.1 | type II toxin-antitoxin system antitoxin YacA | - |
| QDX30_RS25230 (34817) | 34817..34927 | + | 111 | Protein_38 | type II toxin-antitoxin system toxin YacB | - |
| QDX30_RS25235 (35026) | 35026..35349 | + | 324 | WP_282843136.1 | hypothetical protein | - |
| QDX30_RS25240 (35530) | 35530..36717 | - | 1188 | WP_086186060.1 | IS91 family transposase IS91 | Transposase |
| QDX30_RS25245 (36717) | 36717..37082 | - | 366 | WP_000124096.1 | hypothetical protein | - |
| QDX30_RS25250 (37101) | 37101..37322 | + | 222 | WP_282843137.1 | hypothetical protein | - |
| QDX30_RS25255 (37498) | 37498..37767 | + | 270 | WP_000079937.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| QDX30_RS25260 (37767) | 37767..38045 | + | 279 | WP_244461648.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| QDX30_RS25265 (38354) | 38354..39496 | + | 1143 | WP_158649904.1 | YiiX/YebB-like N1pC/P60 family cysteine hydrolase | - |
| QDX30_RS25270 (39469) | 39469..39573 | + | 105 | Protein_46 | hypothetical protein | - |
| QDX30_RS25275 (39585) | 39585..39890 | + | 306 | WP_000482654.1 | hypothetical protein | VF |
| QDX30_RS25285 (41056) | 41056..41637 | + | 582 | WP_282843138.1 | hypothetical protein | - |
| QDX30_RS25290 (42257) | 42257..42592 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| QDX30_RS25295 (42930) | 42930..43910 | + | 981 | WP_001218107.1 | plasmid segregation protein ParM | - |
| QDX30_RS25300 (43913) | 43913..44335 | + | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| QDX30_RS25305 (44339) | 44339..44650 | + | 312 | WP_077888996.1 | hypothetical protein | - |
| QDX30_RS25310 (44760) | 44760..45662 | + | 903 | WP_089581230.1 | DUF1281 domain-containing protein | - |
| QDX30_RS25315 (45659) | 45659..45969 | + | 311 | Protein_55 | hypothetical protein | - |
| QDX30_RS25320 (46045) | 46045..46728 | + | 684 | WP_042634423.1 | DNA methylase | - |
| QDX30_RS25325 (46729) | 46729..46950 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| QDX30_RS25330 (46880) | 46880..47396 | + | 517 | Protein_58 | DUF1380 family protein | - |
| QDX30_RS25335 (47447) | 47447..48223 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| QDX30_RS25340 (48640) | 48640..49065 | + | 426 | WP_062873856.1 | antirestriction protein | - |
| QDX30_RS25345 (49112) | 49112..49534 | + | 423 | WP_001613000.1 | DUF1380 family protein | - |
| QDX30_RS25350 (49531) | 49531..49722 | + | 192 | WP_062873855.1 | hypothetical protein | - |
| QDX30_RS25355 (50085) | 50085..50239 | - | 155 | Protein_63 | hypothetical protein | - |
| QDX30_RS25360 (50757) | 50757..50987 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| QDX30_RS25365 (51039) | 51039..52400 | + | 1362 | WP_282843139.1 | DUF3560 domain-containing protein | - |
| QDX30_RS25370 (52447) | 52447..53010 | + | 564 | WP_042634411.1 | class I SAM-dependent methyltransferase | - |
| QDX30_RS25375 (53610) | 53610..53816 | + | 207 | WP_000547945.1 | hypothetical protein | - |
| QDX30_RS25380 (53842) | 53842..54372 | + | 531 | WP_032214168.1 | single-stranded DNA-binding protein | - |
| QDX30_RS25385 (54428) | 54428..54661 | + | 234 | WP_000005971.1 | DUF905 domain-containing protein | - |
| QDX30_RS25390 (54725) | 54725..56683 | + | 1959 | WP_282843141.1 | ParB/RepB/Spo0J family partition protein | - |
| QDX30_RS25395 (56738) | 56738..57172 | + | 435 | WP_042634413.1 | conjugation system SOS inhibitor PsiB | - |
| QDX30_RS25400 (57169) | 57169..57931 | + | 763 | Protein_72 | plasmid SOS inhibition protein A | - |
| QDX30_RS25405 (57900) | 57900..58088 | - | 189 | WP_032084246.1 | hypothetical protein | - |
| - (58057) | 58057..58122 | + | 66 | NuclAT_1 | - | - |
| - (57900) | 57900..58124 | + | 225 | NuclAT_0 | - | - |
| - (57900) | 57900..58124 | + | 225 | NuclAT_0 | - | - |
| - (57900) | 57900..58124 | + | 225 | NuclAT_0 | - | - |
| - (57900) | 57900..58124 | + | 225 | NuclAT_0 | - | - |
| - (57900) | 57900..58124 | - | 225 | NuclAT_0 | - | - |
| QDX30_RS25410 (58110) | 58110..58259 | + | 150 | Protein_74 | plasmid maintenance protein Mok | - |
| QDX30_RS25415 (58201) | 58201..58326 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| QDX30_RS25420 (58546) | 58546..58776 | + | 231 | WP_001426396.1 | hypothetical protein | - |
| QDX30_RS25425 (58774) | 58774..58947 | - | 174 | Protein_77 | hypothetical protein | - |
| QDX30_RS25430 (59017) | 59017..59223 | + | 207 | WP_000547968.1 | hypothetical protein | - |
| QDX30_RS25435 (59248) | 59248..59535 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| QDX30_RS25440 (59653) | 59653..60474 | + | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| QDX30_RS25445 (60771) | 60771..61373 | - | 603 | WP_000243703.1 | hypothetical protein | VF |
| QDX30_RS25450 (61696) | 61696..62079 | + | 384 | WP_001428424.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| QDX30_RS25455 (62272) | 62272..62943 | + | 672 | WP_032083167.1 | conjugal transfer transcriptional regulator TraJ | - |
| QDX30_RS25460 (63080) | 63080..63307 | + | 228 | WP_000089265.1 | conjugal transfer relaxosome protein TraY | - |
| QDX30_RS25465 (63340) | 63340..63708 | + | 369 | WP_032083166.1 | type IV conjugative transfer system pilin TraA | - |
| QDX30_RS25470 (63713) | 63713..64024 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| QDX30_RS25475 (64046) | 64046..64612 | + | 567 | WP_000399797.1 | type IV conjugative transfer system protein TraE | - |
| QDX30_RS25480 (64599) | 64599..65327 | + | 729 | WP_089648344.1 | type-F conjugative transfer system secretin TraK | - |
| QDX30_RS25485 (65327) | 65327..66754 | + | 1428 | WP_000146635.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| QDX30_RS25490 (66744) | 66744..67331 | + | 588 | WP_087851930.1 | conjugal transfer pilus-stabilizing protein TraP | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|