MGE detailed information
MGE type: Conjugative plasmid MGE length: 136050 bp
Accession: NZ_CP122589 Location: 1..136050 Organism: Escherichia coli strain ETEC6335 Replicon: plasmid unnamed1
Accession: NZ_CP122589 Location: 1..136050 Organism: Escherichia coli strain ETEC6335 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY30_RS24855 (1) | 1..939 | + | 939 | WP_000038336.1 | Recombination-promoting nuclease RpnA | VF |
| QDY30_RS24860 (1002) | 1002..1160 | + | 159 | WP_000150310.1 | hypothetical protein | - |
| QDY30_RS24865 (1191) | 1191..1442 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| QDY30_RS24870 (2023) | 2023..2871 | + | 849 | WP_042966952.1 | DUF4942 domain-containing protein | - |
| QDY30_RS24875 (2957) | 2957..3292 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| QDY30_RS24880 (3526) | 3526..3858 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| QDY30_RS24885 (3869) | 3869..6568 | + | 2700 | WP_236448402.1 | Protein TraI | Relaxase |
| QDY30_RS24890 (6605) | 6605..6970 | - | 366 | Protein_7 | conjugal transfer protein TrbC | - |
| QDY30_RS24895 (7002) | 7002..8573 | - | 1572 | WP_000381443.1 | IS66 family transposase IS679 | Transposase |
| QDY30_RS24900 (8593) | 8593..8940 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| QDY30_RS24905 (8940) | 8940..9590 | - | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| QDY30_RS24910 (9674) | 9674..11608 | - | 1935 | Protein_11 | F-type conjugative transfer protein TrbC | - |
| QDY30_RS24915 (11601) | 11601..12671 | - | 1071 | WP_000151582.1 | IncI1-type conjugal transfer protein TrbB | - |
| QDY30_RS24920 (12690) | 12690..13898 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (14078) | 14078..14135 | - | 58 | NuclAT_1 | - | - |
| - (14078) | 14078..14135 | - | 58 | NuclAT_1 | - | - |
| - (14078) | 14078..14135 | - | 58 | NuclAT_1 | - | - |
| - (14078) | 14078..14135 | - | 58 | NuclAT_1 | - | - |
| QDY30_RS24925 (14205) | 14205..14984 | - | 780 | WP_275450201.1 | protein FinQ | - |
| - (15499) | 15499..15561 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (15499) | 15499..15561 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (15499) | 15499..15561 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (15499) | 15499..15561 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| QDY30_RS24930 (15611) | 15611..15763 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| QDY30_RS24935 (15835) | 15835..16086 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| QDY30_RS24940 (16281) | 16281..17852 | - | 1572 | WP_000381443.1 | IS66 family transposase IS679 | Transposase |
| QDY30_RS24945 (17872) | 17872..18219 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| QDY30_RS24950 (18219) | 18219..18869 | - | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| - (19185) | 19185..19236 | - | 52 | NuclAT_2 | - | - |
| - (19185) | 19185..19236 | - | 52 | NuclAT_2 | - | - |
| - (19185) | 19185..19236 | - | 52 | NuclAT_2 | - | - |
| - (19185) | 19185..19236 | - | 52 | NuclAT_2 | - | - |
| QDY30_RS24955 (19916) | 19916..20011 | + | 96 | WP_001303310.1 | DinQ-like type I toxin DqlB | - |
| QDY30_RS24960 (20076) | 20076..20252 | - | 177 | WP_001054898.1 | hypothetical protein | - |
| QDY30_RS24965 (20584) | 20584..20793 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| QDY30_RS24970 (20865) | 20865..21527 | - | 663 | WP_000644797.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| QDY30_RS24975 (21598) | 21598..23766 | - | 2169 | WP_000698368.1 | DotA/TraY family protein | - |
| QDY30_RS24980 (23863) | 23863..24447 | - | 585 | WP_001037980.1 | IncI1-type conjugal transfer protein TraX | - |
| QDY30_RS24985 (24476) | 24476..25678 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| QDY30_RS24990 (25645) | 25645..25770 | - | 126 | Protein_27 | conjugal transfer protein TraV | - |
| QDY30_RS24995 (25826) | 25826..27039 | + | 1214 | WP_169005756.1 | IS3 family transposase IS1203 | Transposase |
| QDY30_RS25000 (26978) | 26978..27572 | - | 595 | Protein_29 | hypothetical protein | - |
| QDY30_RS25005 (27572) | 27572..30616 | - | 3045 | WP_236490521.1 | IncI1-type conjugal transfer protein TraU | - |
| QDY30_RS25010 (30706) | 30706..31506 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| QDY30_RS25015 (31490) | 31490..31678 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| QDY30_RS25020 (31742) | 31742..32146 | - | 405 | WP_001422824.1 | IncI1-type conjugal transfer protein TraR | - |
| QDY30_RS25025 (32197) | 32197..32724 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| QDY30_RS25030 (32724) | 32724..33428 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| QDY30_RS25035 (33428) | 33428..34717 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| QDY30_RS25040 (34720) | 34720..35703 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| QDY30_RS25045 (35714) | 35714..36406 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| QDY30_RS25050 (36403) | 36403..36750 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| QDY30_RS25055 (36768) | 36768..40535 | - | 3768 | WP_001141539.1 | DUF5710 domain-containing protein | - |
| QDY30_RS25060 (40625) | 40625..41176 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| QDY30_RS25065 (41191) | 41191..41481 | - | 291 | WP_001372180.1 | hypothetical protein | - |
| QDY30_RS25070 (41478) | 41478..42626 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| QDY30_RS25075 (42623) | 42623..43441 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| QDY30_RS25080 (43438) | 43438..43632 | - | 195 | Protein_45 | IncI1-type conjugal transfer lipoprotein TraH | - |
| QDY30_RS25085 (43664) | 43664..45235 | - | 1572 | WP_000381443.1 | IS66 family transposase IS679 | Transposase |
| QDY30_RS25090 (45255) | 45255..45602 | - | 348 | WP_000624618.1 | IS66 family transposase ISCro1 | Transposase |
| QDY30_RS25095 (45602) | 45602..46252 | - | 651 | WP_000993956.1 | IS66 family transposase IS679 | Transposase |
| QDY30_RS25100 (46342) | 46342..46608 | - | 267 | Protein_49 | IncI1-type conjugal transfer lipoprotein TraH | - |
| QDY30_RS25105 (47003) | 47003..47587 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| QDY30_RS25110 (47647) | 47647..48849 | - | 1203 | WP_000976349.1 | conjugal transfer protein TraF | - |
| QDY30_RS25115 (48935) | 48935..49759 | - | 825 | WP_001238927.1 | conjugal transfer protein TraE | - |
| QDY30_RS25120 (49910) | 49910..51064 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| QDY30_RS25125 (52538) | 52538..53818 | - | 1281 | WP_282866919.1 | hypothetical protein | VF |
| QDY30_RS25130 (53818) | 53818..54474 | - | 657 | WP_001389386.1 | hypothetical protein | VF |
| QDY30_RS25135 (54459) | 54459..55019 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| QDY30_RS25140 (55029) | 55029..55643 | - | 615 | WP_000959786.1 | hypothetical protein | VF |
| QDY30_RS25145 (55661) | 55661..56758 | - | 1098 | WP_001208805.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| QDY30_RS25150 (56771) | 56771..58324 | - | 1554 | WP_000362202.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| QDY30_RS25155 (58335) | 58335..58787 | - | 453 | WP_001247334.1 | hypothetical protein | VF |
| QDY30_RS25160 (58774) | 58774..60069 | - | 1296 | WP_000752772.1 | hypothetical protein | VF |
| QDY30_RS25165 (60062) | 60062..61744 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| QDY30_RS25170 (61758) | 61758..62195 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| QDY30_RS25175 (62195) | 62195..63261 | - | 1067 | Protein_64 | hypothetical protein | VF |
| QDY30_RS25180 (63885) | 63885..64181 | - | 297 | WP_000494779.1 | hypothetical protein | - |
| QDY30_RS25185 (64357) | 64357..64611 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| QDY30_RS25190 (64773) | 64773..65324 | - | 552 | WP_282866921.1 | hypothetical protein | - |
| QDY30_RS25195 (65497) | 65497..66180 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| QDY30_RS25200 (66434) | 66434..66967 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| QDY30_RS25205 (67409) | 67409..67696 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| QDY30_RS25210 (67614) | 67614..67892 | - | 279 | WP_219065241.1 | ash family protein | - |
| QDY30_RS25215 (68850) | 68850..69881 | + | 1032 | WP_000907870.1 | plasmid replication initiator RepA | - |
| QDY30_RS25220 (70577) | 70577..70717 | + | 141 | WP_001333237.1 | hypothetical protein | - |
| QDY30_RS25225 (70815) | 70815..71276 | + | 462 | WP_106914169.1 | histidine phosphatase family protein | - |
| QDY30_RS25230 (71449) | 71449..72636 | - | 1188 | WP_000937614.1 | IS91 family transposase IS91 | Transposase |
| QDY30_RS25235 (72636) | 72636..73001 | - | 366 | WP_000124098.1 | hypothetical protein | - |
| QDY30_RS25240 (73329) | 73329..73889 | - | 561 | Protein_77 | IS91 family transposase IS91 | Transposase |
| QDY30_RS25245 (74080) | 74080..75267 | - | 1188 | WP_282866894.1 | IS91 family transposase IS91 | Transposase |
| QDY30_RS25250 (75267) | 75267..75632 | - | 366 | WP_000091308.1 | hypothetical protein | - |
| QDY30_RS25255 (75688) | 75688..75876 | + | 189 | WP_089572224.1 | CPBP family intramembrane metalloprotease | - |
| QDY30_RS25260 (75969) | 75969..76226 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| QDY30_RS25265 (76159) | 76159..76560 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| QDY30_RS25270 (76725) | 76725..77422 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| QDY30_RS25275 (77529) | 77529..77963 | - | 435 | WP_000429836.1 | IS607 family transposase ISChh1 | Transposase |
| QDY30_RS25280 (78035) | 78035..78385 | + | 351 | WP_001294663.1 | mercuric transport protein MerT | - |
| QDY30_RS25285 (78399) | 78399..78674 | + | 276 | WP_000732292.1 | mercury resistance system periplasmic binding protein MerP | - |
| QDY30_RS25290 (78710) | 78710..79132 | + | 423 | WP_001340589.1 | organomercurial transporter MerC | - |
| QDY30_RS25295 (79184) | 79184..80878 | + | 1695 | WP_000105636.1 | mercury(II) reductase | - |
| QDY30_RS25300 (80896) | 80896..81258 | + | 363 | WP_001277456.1 | mercury resistance co-regulator MerD | - |
| QDY30_RS25305 (81255) | 81255..81491 | + | 237 | WP_000993386.1 | broad-spectrum mercury transporter MerE | - |
| QDY30_RS25310 (81527) | 81527..82195 | + | 669 | WP_001300294.1 | putative signaling protein | VF |
| QDY30_RS25315 (82270) | 82270..83949 | + | 1680 | WP_000179844.1 | DDE-type integrase/transposase/recombinase | - |
| QDY30_RS25320 (83952) | 83952..84812 | + | 861 | WP_000344784.1 | TniB family NTP-binding protein | - |
| QDY30_RS25325 (84914) | 84914..86437 | + | 1524 | WP_001324342.1 | IS21 family transposase IS1326 | Transposase |
| QDY30_RS25330 (86424) | 86424..87209 | + | 786 | WP_000983249.1 | IS21 family transposase IS1326 | Transposase |
| QDY30_RS25335 (87385) | 87385..87885 | - | 501 | WP_000376623.1 | GNAT family N-acetyltransferase | - |
| QDY30_RS25340 (88013) | 88013..88852 | - | 840 | WP_000259031.1 | Dihydropteroate synthase | ARG |
| QDY30_RS25345 (88846) | 88846..89193 | - | 348 | WP_000679427.1 | Multidrug transporter EmrE | ARG |
| QDY30_RS25350 (89310) | 89310..90148 | - | 839 | Protein_99 | Streptomycin 3''-adenylyltransferase | ARG |
| QDY30_RS25355 (90167) | 90167..90640 | - | 474 | WP_000777555.1 | Dihydrofolate reductase type 1 | ARG |
| QDY30_RS25360 (90797) | 90797..91810 | + | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| QDY30_RS25365 (92013) | 92013..92363 | + | 351 | WP_000454193.1 | DUF3330 domain-containing protein | - |
| QDY30_RS25370 (92440) | 92440..93084 | + | 645 | Protein_103 | STAS domain-containing protein | - |
| QDY30_RS25375 (93119) | 93119..93973 | + | 855 | WP_011787802.1 | universal stress protein | - |
| QDY30_RS25380 (94064) | 94064..94396 | + | 333 | WP_011787803.1 | TraR/DksA C4-type zinc finger protein | - |
| QDY30_RS25385 (94685) | 94685..95389 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| QDY30_RS25390 (95456) | 95456..95704 | + | 249 | WP_011191340.1 | type II toxin-antitoxin system YafQ family toxin | - |
| QDY30_RS25395 (95833) | 95833..96399 | + | 567 | WP_003159185.1 | Tn3 family transposase ISPsy42 | Transposase |
| QDY30_RS25400 (96406) | 96406..96594 | + | 189 | WP_001191969.1 | hypothetical protein | - |
| QDY30_RS25405 (96626) | 96626..97276 | - | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| QDY30_RS25410 (97382) | 97382..98581 | + | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| QDY30_RS25415 (98613) | 98613..99497 | - | 885 | WP_000058717.1 | EamA family transporter | - |
| QDY30_RS25420 (99635) | 99635..100027 | - | 393 | WP_001351729.1 | isochorismatase family cysteine hydrolase | - |
| QDY30_RS25425 (100031) | 100031..101782 | + | 1752 | Protein_114 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| QDY30_RS25430 (101837) | 101837..102160 | - | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| QDY30_RS25435 (102265) | 102265..103398 | + | 1134 | WP_001089728.1 | permease | - |
| QDY30_RS25440 (103691) | 103691..104307 | - | 617 | Protein_117 | ProQ/FINO family protein | - |
| QDY30_RS25445 (104498) | 104498..106054 | - | 1557 | WP_000818556.1 | AAA family ATPase | - |
| QDY30_RS25450 (106317) | 106317..106907 | - | 591 | WP_000194575.1 | hypothetical protein | - |
| QDY30_RS25455 (106907) | 106907..107164 | - | 258 | WP_000343085.1 | hypothetical protein | - |
| QDY30_RS25460 (107518) | 107518..109656 | + | 2139 | WP_000350639.1 | AAA family ATPase | - |
| QDY30_RS25465 (109818) | 109818..110234 | - | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| QDY30_RS25470 (110231) | 110231..110461 | - | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| QDY30_RS25475 (110757) | 110757..111047 | + | 291 | WP_000111771.1 | hypothetical protein | - |
| QDY30_RS25480 (111037) | 111037..111936 | + | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| QDY30_RS25485 (111986) | 111986..114211 | - | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| QDY30_RS25490 (114213) | 114213..115301 | - | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| QDY30_RS25495 (115853) | 115853..116266 | + | 414 | WP_000465036.1 | hypothetical protein | - |
| QDY30_RS25500 (116268) | 116268..117047 | + | 780 | WP_282866924.1 | site-specific integrase | - |
| QDY30_RS25505 (117226) | 117226..117870 | + | 645 | WP_001144036.1 | ParA family protein | - |
| QDY30_RS25510 (117957) | 117957..118265 | + | 309 | WP_000048808.1 | hypothetical protein | - |
| QDY30_RS25515 (118679) | 118679..119658 | + | 980 | Protein_132 | plasmid segregation protein ParM | - |
| QDY30_RS25520 (119651) | 119651..120067 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| QDY30_RS25525 (120069) | 120069..121343 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| QDY30_RS25530 (121343) | 121343..121780 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| QDY30_RS25535 (121777) | 121777..122025 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| QDY30_RS25540 (122443) | 122443..123345 | + | 903 | WP_140433837.1 | DUF1281 domain-containing protein | - |
| QDY30_RS25545 (123342) | 123342..123653 | + | 312 | WP_065304464.1 | hypothetical protein | - |
| QDY30_RS25550 (123729) | 123729..124412 | + | 684 | WP_001599378.1 | DNA methylase | - |
| QDY30_RS25555 (124413) | 124413..124634 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| QDY30_RS25560 (124615) | 124615..125081 | + | 467 | Protein_141 | DUF1380 family protein | - |
| QDY30_RS25565 (125132) | 125132..125902 | + | 771 | WP_058799122.1 | hypothetical protein | - |
| QDY30_RS25570 (126319) | 126319..126744 | + | 426 | WP_001198941.1 | antirestriction protein | - |
| QDY30_RS25575 (126791) | 126791..127213 | + | 423 | WP_000271679.1 | DUF1380 family protein | - |
| QDY30_RS25580 (127210) | 127210..127401 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| QDY30_RS25585 (127553) | 127553..127786 | + | 234 | WP_023994109.1 | hypothetical protein | - |
| QDY30_RS25590 (128170) | 128170..128697 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| QDY30_RS25595 (128755) | 128755..128988 | + | 234 | WP_052895272.1 | DUF905 domain-containing protein | - |
| QDY30_RS25600 (129047) | 129047..131005 | + | 1959 | WP_052895273.1 | ParB/RepB/Spo0J family partition protein | - |
| QDY30_RS25605 (131060) | 131060..131494 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| QDY30_RS25610 (131491) | 131491..132210 | + | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| QDY30_RS25615 (132340) | 132340..133515 | + | 1176 | WP_000942657.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| QDY30_RS25620 (133963) | 133963..134463 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| QDY30_RS25625 (135192) | 135192..135626 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| QDY30_RS25630 (135720) | 135720..135986 | + | 267 | WP_001247862.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|