MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 156057 bp
Accession: NZ_CP122327 Location: 1..156057 Organism: Pantoea agglomerans pv. betae strain 4188 Replicon: plasmid pPATHpab
Accession: NZ_CP122327 Location: 1..156057 Organism: Pantoea agglomerans pv. betae strain 4188 Replicon: plasmid pPATHpab
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A7P61_RS03370 (A7P61_03370) | 1002..1463 | + | 462 | WP_064691087.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| A7P61_RS03375 (A7P61_03375) | 1463..2038 | + | 576 | WP_064691088.1 | PIN domain-containing protein | Toxin Detail |
| A7P61_RS03380 (A7P61_03380) | 2198..2602 | - | 405 | WP_155740503.1 | hypothetical protein | - |
| A7P61_RS03385 (A7P61_03385) | 2580..3248 | - | 669 | WP_064703434.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| A7P61_RS03390 (A7P61_03390) | 3967..4449 | + | 483 | WP_064703435.1 | zeta toxin family protein | - |
| A7P61_RS03395 (A7P61_03395) | 4626..5734 | + | 1109 | Protein_6 | IS3 family transposase | - |
| A7P61_RS03400 (A7P61_03400) | 5768..5869 | - | 102 | Protein_7 | 3'-5' exonuclease | - |
| A7P61_RS03405 (A7P61_03405) | 6178..6843 | + | 666 | Protein_8 | chemotaxis protein | - |
| A7P61_RS03410 (A7P61_03410) | 6843..7013 | - | 171 | Protein_9 | IS3 family transposase IS1400 | Transposase |
| A7P61_RS03415 (A7P61_03415) | 7139..7681 | + | 543 | WP_064691090.1 | chorismate mutase | - |
| A7P61_RS03420 (A7P61_03420) | 8174..8620 | - | 447 | WP_196766494.1 | VirK family protein | - |
| A7P61_RS03425 (A7P61_03425) | 9524..10218 | - | 695 | Protein_12 | DUF4113 domain-containing protein | - |
| A7P61_RS03430 (A7P61_03430) | 10279..10976 | + | 698 | Protein_13 | IS6 family transposase | - |
| A7P61_RS03435 (A7P61_03435) | 11315..13069 | + | 1755 | WP_283833881.1 | hypothetical protein | - |
| A7P61_RS03440 (A7P61_03440) | 13412..13624 | + | 213 | WP_196766516.1 | hypothetical protein | - |
| A7P61_RS03445 (A7P61_03445) | 13799..14496 | + | 698 | Protein_16 | IS6 family transposase IS1327 | Transposase |
| A7P61_RS03450 (A7P61_03450) | 14546..15421 | - | 876 | Protein_17 | IS481 family transposase | - |
| A7P61_RS03455 (A7P61_03455) | 15482..15668 | + | 187 | Protein_18 | hypothetical protein | - |
| A7P61_RS03460 (A7P61_03460) | 15784..17900 | - | 2117 | Protein_19 | type III secretion system effector HopD1 | - |
| A7P61_RS03465 (A7P61_03465) | 18064..18168 | + | 105 | Protein_20 | plasmid partition protein ParG | - |
| A7P61_RS03475 (A7P61_03475) | 20347..20867 | - | 521 | Protein_22 | IS630 family transposase | - |
| A7P61_RS03480 (A7P61_03480) | 20947..21791 | + | 845 | WP_155740539.1 | IS5 family transposase ISEhe2 | Transposase |
| A7P61_RS03485 (A7P61_03485) | 22433..23464 | + | 1032 | WP_064704073.1 | tyrosine-type recombinase/integrase | - |
| A7P61_RS03490 (A7P61_03490) | 23609..23788 | - | 180 | Protein_25 | IS3 family transposase ISBmu11 | Transposase |
| A7P61_RS03495 (A7P61_03495) | 23905..24165 | + | 261 | Protein_26 | IS5 family transposase ISPa41 | Transposase |
| A7P61_RS03500 (A7P61_03500) | 24682..25074 | + | 393 | WP_074399289.1 | CesT family type III secretion system chaperone | - |
| A7P61_RS03505 (A7P61_03505) | 25084..26331 | + | 1248 | WP_196766520.1 | type III effector | - |
| A7P61_RS03510 (A7P61_03510) | 26405..26724 | - | 320 | Protein_29 | IS5 family transposase ISPs1 | Transposase |
| A7P61_RS03515 (A7P61_03515) | 26803..27750 | + | 948 | Protein_30 | type III helper protein HopAK1 | - |
| A7P61_RS03520 (A7P61_03520) | 27962..28216 | - | 255 | Protein_31 | DUF4158 domain-containing protein | - |
| A7P61_RS03525 (A7P61_03525) | 28206..28623 | - | 418 | Protein_32 | Tn3 family transposase TnpR_ISPsy30 | Transposase |
| A7P61_RS03530 (A7P61_03530) | 29043..29684 | - | 642 | WP_283833877.1 | hypothetical protein | - |
| A7P61_RS03535 (A7P61_03535) | 30025..30204 | + | 180 | WP_064704007.1 | DUF6500 family protein | - |
| A7P61_RS03540 (A7P61_03540) | 30210..30857 | - | 648 | WP_064704006.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| A7P61_RS03545 (A7P61_03545) | 31026..34012 | + | 2987 | Protein_36 | Tn3 family transposase TnpA_TnEc1 | Transposase |
| A7P61_RS03550 (A7P61_03550) | 34030..34152 | - | 123 | Protein_37 | recombinase family protein | - |
| A7P61_RS03555 (A7P61_03555) | 34534..35376 | - | 843 | WP_196766518.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| A7P61_RS03560 (A7P61_03560) | 35557..36615 | - | 1059 | WP_196766517.1 | YopT-type cysteine protease domain-containing protein | - |
| A7P61_RS03565 (A7P61_03565) | 36727..36846 | + | 120 | WP_155740534.1 | IS66 family transposase ISAzca2 | Transposase |
| A7P61_RS03570 (A7P61_03570) | 36890..37021 | + | 132 | WP_269202084.1 | IS3 family transposase ISMaq2 | Transposase |
| A7P61_RS03575 (A7P61_03575) | 37068..37765 | + | 698 | Protein_42 | IS6 family transposase | - |
| A7P61_RS03580 (A7P61_03580) | 37989..38972 | - | 984 | WP_074400003.1 | XopE/AvrPphe family type III secretion system effector | - |
| A7P61_RS03585 (A7P61_03585) | 39288..39985 | - | 698 | Protein_44 | IS6 family transposase | - |
| A7P61_RS03590 (A7P61_03590) | 40165..40875 | - | 711 | WP_064703997.1 | isopentenyl transferase family protein | - |
| A7P61_RS03595 (A7P61_03595) | 40872..41378 | - | 507 | WP_064703998.1 | hypothetical protein | - |
| A7P61_RS03600 (A7P61_03600) | 41496..42863 | - | 1368 | WP_064703999.1 | Mandelamide hydrolase | VF |
| A7P61_RS03605 (A7P61_03605) | 42899..44590 | - | 1692 | WP_064704000.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| A7P61_RS03610 (A7P61_03610) | 45085..45761 | - | 677 | Protein_49 | IS1 family transposase | - |
| A7P61_RS03615 (A7P61_03615) | 46385..46789 | + | 405 | WP_064690499.1 | cupin domain-containing protein | - |
| A7P61_RS03620 (A7P61_03620) | 46980..47483 | + | 504 | WP_064690498.1 | GNAT family N-acetyltransferase | - |
| A7P61_RS03625 (A7P61_03625) | 47526..48222 | - | 697 | Protein_52 | IS1 family transposase | - |
| A7P61_RS03630 (A7P61_03630) | 48283..48609 | + | 327 | Protein_53 | omptin family outer membrane protease | - |
| A7P61_RS03640 (A7P61_03640) | 49832..50230 | + | 399 | Protein_55 | Coagulase/fibrinolysin | VF |
| A7P61_RS03645 (A7P61_03645) | 51155..52141 | - | 987 | WP_064703572.1 | ParB family protein | - |
| A7P61_RS03650 (A7P61_03650) | 52138..53346 | - | 1209 | WP_064690496.1 | Plasmid partition protein A | VF |
| A7P61_RS03655 (A7P61_03655) | 54661..54972 | - | 312 | WP_269202040.1 | hypothetical protein | - |
| A7P61_RS03660 (A7P61_03660) | 55015..55527 | - | 513 | WP_269202076.1 | RepB family plasmid replication initiator protein | - |
| A7P61_RS03665 (A7P61_03665) | 55840..56042 | - | 203 | Protein_60 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| A7P61_RS03670 (A7P61_03670) | 56349..57272 | + | 924 | WP_064690495.1 | IS5 family transposase ISEcl3 | Transposase |
| A7P61_RS03675 (A7P61_03675) | 57455..62491 | + | 5037 | WP_155740509.1 | transducer protein car | - |
| A7P61_RS03680 (A7P61_03680) | 62764..63461 | + | 698 | Protein_63 | IS6 family transposase | - |
| A7P61_RS03685 (A7P61_03685) | 63799..65814 | + | 2016 | WP_032489273.1 | hypothetical protein | - |
| A7P61_RS03690 (A7P61_03690) | 65933..66630 | + | 698 | Protein_65 | IS6 family transposase | - |
| A7P61_RS03695 (A7P61_03695) | 66935..67339 | - | 405 | WP_064690638.1 | cupin domain-containing protein | - |
| A7P61_RS03700 (A7P61_03700) | 67781..68137 | + | 357 | WP_064703210.1 | hypothetical protein | - |
| A7P61_RS03705 (A7P61_03705) | 68618..68797 | + | 180 | Protein_68 | S24 family peptidase | - |
| A7P61_RS03710 (A7P61_03710) | 68929..69351 | - | 423 | WP_231115731.1 | type III secretion system chaperone | - |
| A7P61_RS03715 (A7P61_03715) | 69405..75371 | - | 5967 | WP_231115730.1 | AvrE-family type 3 secretion system effector | - |
| A7P61_RS03720 (A7P61_03720) | 75433..75843 | - | 411 | WP_155740493.1 | hypothetical protein | - |
| A7P61_RS03725 (A7P61_03725) | 76091..76444 | - | 354 | WP_231115729.1 | type III secretion system chaperone | - |
| A7P61_RS03730 (A7P61_03730) | 76529..77674 | - | 1146 | WP_064703209.1 | harpin HrpZ family protein | - |
| A7P61_RS03735 (A7P61_03735) | 77952..78302 | - | 351 | WP_064690641.1 | HrpV family type III secretion system protein | - |
| A7P61_RS03740 (A7P61_03740) | 78295..78492 | - | 198 | WP_231113927.1 | HrpT family type III secretion system protein | - |
| A7P61_RS03745 (A7P61_03745) | 78503..80536 | - | 2034 | WP_064703208.1 | Type 3 secretion system secretin | VF |
| A7P61_RS03750 (A7P61_03750) | 80529..80948 | - | 420 | WP_064690643.1 | type III secretion system chaperone | - |
| A7P61_RS03755 (A7P61_03755) | 80950..81174 | - | 225 | WP_064703207.1 | serine kinase | - |
| A7P61_RS03760 (A7P61_03760) | 81267..81854 | - | 588 | WP_064703206.1 | type III secretion system stator protein SctL | - |
| A7P61_RS03765 (A7P61_03765) | 81848..82438 | - | 591 | WP_064690646.1 | hypothetical protein | - |
| A7P61_RS03770 (A7P61_03770) | 82431..83210 | - | 780 | WP_064703205.1 | hypothetical protein | VF |
| A7P61_RS03775 (A7P61_03775) | 83216..83581 | - | 366 | WP_064703204.1 | EscI/YscI/HrpB family type III secretion system inner rod protein | - |
| A7P61_RS03780 (A7P61_03780) | 83644..83883 | - | 240 | WP_064690649.1 | hypothetical protein | - |
| A7P61_RS03785 (A7P61_03785) | 84087..85061 | - | 975 | WP_064690650.1 | C4-dicarboxylate transport transcriptional regulatory protein DctD | VF |
| A7P61_RS03790 (A7P61_03790) | 85416..86057 | - | 642 | WP_064690651.1 | Response regulator UvrY | VF |
| A7P61_RS03795 (A7P61_03795) | 86062..87552 | - | 1491 | WP_064703203.1 | PAS domain S-box protein | - |
| A7P61_RS03800 (A7P61_03800) | 87697..88245 | - | 549 | WP_064690653.1 | sigma-70 family RNA polymerase sigma factor | - |
| A7P61_RS03805 (A7P61_03805) | 88521..89696 | + | 1176 | WP_064703202.1 | type III secretion system gatekeeper subunit SctW | - |
| A7P61_RS03810 (A7P61_03810) | 89697..91856 | + | 2160 | WP_064690655.1 | Secretion system apparatus protein SsaV | VF |
| A7P61_RS03815 (A7P61_03815) | 91835..92758 | + | 924 | WP_064690656.1 | hypothetical protein | VF |
| A7P61_RS03820 (A7P61_03820) | 92752..94116 | + | 1365 | WP_064690657.1 | Type III secretion ATP synthase HrcN | VF |
| A7P61_RS03825 (A7P61_03825) | 94103..94543 | + | 441 | WP_064703201.1 | hypothetical protein | - |
| A7P61_RS03830 (A7P61_03830) | 94540..95013 | + | 474 | WP_064690659.1 | type III secretion system HrpP C-terminal domain-containing protein | - |
| A7P61_RS03835 (A7P61_03835) | 95205..96020 | + | 816 | WP_231113929.1 | FliM/FliN family flagellar motor switch protein | - |
| A7P61_RS03840 (A7P61_03840) | 96017..96670 | + | 654 | WP_064690661.1 | Surface presentation of antigens protein SpaP | VF |
| A7P61_RS03845 (A7P61_03845) | 96680..96940 | + | 261 | WP_064690662.1 | Surface presentation of antigens protein SpaQ | VF |
| A7P61_RS03850 (A7P61_03850) | 96943..97740 | + | 798 | WP_064690663.1 | Surface presentation of antigens protein SpaR | VF |
| A7P61_RS03855 (A7P61_03855) | 97742..98824 | + | 1083 | WP_064703199.1 | Yop proteins translocation protein U | VF |
| A7P61_RS03860 (A7P61_03860) | 98932..99387 | + | 456 | WP_064690665.1 | GNAT family N-acetyltransferase | - |
| A7P61_RS03865 (A7P61_03865) | 99452..99867 | - | 416 | Protein_100 | transposase | - |
| A7P61_RS03870 (A7P61_03870) | 100000..100482 | + | 483 | Protein_101 | IS630 family transposase ISEhe1 | Transposase |
| A7P61_RS03875 (A7P61_03875) | 100504..100806 | - | 303 | Protein_102 | transposase | - |
| A7P61_RS03880 (A7P61_03880) | 100878..101998 | + | 1121 | WP_155740544.1 | IS3 family transposase ISEhe4 | Transposase |
| A7P61_RS03885 (A7P61_03885) | 102036..102749 | - | 714 | Protein_104 | Y-family DNA polymerase | - |
| A7P61_RS03890 (A7P61_03890) | 103274..104421 | + | 1148 | WP_283833878.1 | IS3 family transposase ISEhe3 | Transposase |
| A7P61_RS03895 (A7P61_03895) | 104384..104692 | + | 309 | WP_074399966.1 | hypothetical protein | - |
| A7P61_RS03900 (A7P61_03900) | 104728..105231 | - | 504 | WP_064703612.1 | hypothetical protein | - |
| A7P61_RS03905 (A7P61_03905) | 106641..106811 | - | 171 | Protein_108 | chemotaxis protein | - |
| A7P61_RS03910 (A7P61_03910) | 107170..107457 | - | 288 | WP_283833879.1 | hypothetical protein | - |
| A7P61_RS03915 (A7P61_03915) | 107422..108131 | + | 710 | Protein_110 | IS6 family transposase | - |
| A7P61_RS03920 (A7P61_03920) | 108383..109606 | + | 1224 | WP_283833883.1 | type III secretion system effector HopQ1-1 | - |
| A7P61_RS03925 (A7P61_03925) | 109722..111839 | - | 2118 | WP_283833880.1 | type III secretion system effector HopD1 | - |
| A7P61_RS03930 (A7P61_03930) | 112115..112216 | + | 102 | Protein_113 | IS6 family transposase | - |
| A7P61_RS03935 (A7P61_03935) | 112200..112925 | + | 726 | WP_074399967.1 | DUF1173 family protein | - |
| A7P61_RS03940 (A7P61_03940) | 113232..113489 | + | 258 | WP_064703619.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| A7P61_RS03945 (A7P61_03945) | 113489..113764 | + | 276 | WP_064703620.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| A7P61_RS03950 (A7P61_03950) | 113854..114086 | - | 233 | Protein_117 | IS256 family transposase ISEc39 | Transposase |
| A7P61_RS03955 (A7P61_03955) | 114090..114206 | - | 117 | Protein_118 | IS256 family transposase ISEc39 | Transposase |
| A7P61_RS03960 (A7P61_03960) | 114262..114776 | - | 515 | Protein_119 | IS21 family transposase IS100kyp | Transposase |
| A7P61_RS03965 (A7P61_03965) | 115110..115352 | + | 243 | WP_064703622.1 | hypothetical protein | - |
| A7P61_RS03970 (A7P61_03970) | 115381..116913 | - | 1533 | WP_064703623.1 | type III helper protein HopAK1 | - |
| A7P61_RS03975 (A7P61_03975) | 117389..117606 | + | 218 | Protein_122 | transposase | - |
| A7P61_RS03980 (A7P61_03980) | 118083..118787 | + | 705 | WP_064703625.1 | IS6 family transposase IS26 | Transposase |
| A7P61_RS03985 (A7P61_03985) | 119274..119816 | + | 543 | WP_155740514.1 | hypothetical protein | - |
| A7P61_RS03990 (A7P61_03990) | 120021..120418 | + | 398 | Protein_125 | IS3 family transposase ISEcl1 | Transposase |
| A7P61_RS03995 (A7P61_03995) | 120412..120812 | + | 401 | Protein_126 | IS1 family transposase IS1N | Transposase |
| A7P61_RS04000 (A7P61_04000) | 120821..121647 | + | 827 | Protein_127 | IS5 family transposase | - |
| A7P61_RS04005 (A7P61_04005) | 121668..122963 | - | 1296 | WP_064703628.1 | lytic murein transglycosylase | - |
| A7P61_RS04010 (A7P61_04010) | 123170..124289 | + | 1120 | Protein_129 | IS3 family transposase ISRaq1 | Transposase |
| A7P61_RS04015 (A7P61_04015) | 124820..125995 | + | 1176 | Protein_130 | IS3 family transposase | - |
| A7P61_RS04020 (A7P61_04020) | 125989..126417 | + | 429 | WP_155740515.1 | hypothetical protein | - |
| A7P61_RS04025 (A7P61_04025) | 127032..128093 | + | 1062 | WP_064703632.1 | XopE/AvrPphe family type III secretion system effector | - |
| A7P61_RS04030 (A7P61_04030) | 128184..128336 | + | 153 | Protein_133 | recombinase family protein | - |
| A7P61_RS04035 (A7P61_04035) | 128340..130120 | + | 1781 | Protein_134 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| A7P61_RS04040 (A7P61_04040) | 130120..130260 | - | 141 | Protein_135 | IS6 family transposase | - |
| A7P61_RS04045 (A7P61_04045) | 130327..130536 | - | 210 | Protein_136 | IS6 family transposase | - |
| A7P61_RS04050 (A7P61_04050) | 130595..130687 | + | 93 | Protein_137 | IS1 family transposase | - |
| A7P61_RS04055 (A7P61_04055) | 131525..131691 | - | 167 | Protein_138 | IS1 family transposase | - |
| A7P61_RS04060 (A7P61_04060) | 131757..131915 | + | 159 | Protein_139 | IS6 family transposase | - |
| A7P61_RS04065 (A7P61_04065) | 131970..132674 | - | 705 | Protein_140 | IS6 family transposase | - |
| A7P61_RS04070 (A7P61_04070) | 132738..137858 | - | 5121 | Protein_141 | hypothetical protein | - |
| A7P61_RS04075 (A7P61_04075) | 138254..138879 | - | 626 | Protein_142 | IS5 family transposase IS903 | Transposase |
| A7P61_RS04080 (A7P61_04080) | 138911..140479 | - | 1569 | Protein_143 | IS66 family transposase | - |
| A7P61_RS04085 (A7P61_04085) | 140499..140618 | - | 120 | Protein_144 | IS66 family insertion sequence element accessory protein TnpB | - |
| A7P61_RS04095 (A7P61_04095) | 141928..142641 | + | 714 | WP_155740518.1 | hypothetical protein | - |
| A7P61_RS04100 (A7P61_04100) | 142999..144146 | + | 1148 | WP_283833878.1 | IS3 family transposase ISEhe3 | Transposase |
| A7P61_RS04105 (A7P61_04105) | 144188..144511 | - | 324 | WP_064704002.1 | TrfB-related DNA-binding protein | - |
| A7P61_RS04110 (A7P61_04110) | 145016..145702 | + | 687 | WP_064691066.1 | replication initiation protein | - |
| A7P61_RS04115 (A7P61_04115) | 147164..147790 | - | 627 | WP_081273787.1 | hypothetical protein | - |
| A7P61_RS04120 (A7P61_04120) | 148618..149511 | + | 894 | WP_064703439.1 | integrase domain-containing protein | - |
| A7P61_RS04125 (A7P61_04125) | 149820..150167 | + | 348 | WP_064691070.1 | hypothetical protein | - |
| A7P61_RS04130 (A7P61_04130) | 150261..150602 | + | 342 | WP_064691071.1 | hypothetical protein | - |
| A7P61_RS04135 (A7P61_04135) | 150616..150960 | + | 345 | WP_064691072.1 | hypothetical protein | - |
| A7P61_RS04140 (A7P61_04140) | 151030..151449 | + | 420 | WP_231115737.1 | hypothetical protein | - |
| A7P61_RS04145 (A7P61_04145) | 151706..152317 | + | 612 | WP_064691074.1 | hypothetical protein | - |
| A7P61_RS04150 (A7P61_04150) | 152386..152982 | + | 597 | WP_064703428.1 | hypothetical protein | - |
| A7P61_RS04155 (A7P61_04155) | 153057..154097 | + | 1041 | WP_064703429.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| A7P61_RS04160 (A7P61_04160) | 154423..154911 | + | 489 | WP_064703430.1 | STY4534 family ICE replication protein | - |
| A7P61_RS04165 (A7P61_04165) | 155015..155257 | + | 243 | WP_064703431.1 | DUF4160 domain-containing protein | - |
| A7P61_RS04170 (A7P61_04170) | 155241..155489 | + | 249 | WP_064703432.1 | DUF2442 domain-containing protein | - |
| A7P61_RS04175 (A7P61_04175) | 155616..155936 | + | 321 | Protein_162 | hypothetical protein | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|