MGE detailed information
MGE type: Prophage MGE length: 22914 bp
Accession: NZ_CP122319 Location: 4066853..4089766 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Accession: NZ_CP122319 Location: 4066853..4089766 Organism: Escherichia coli strain BW25113 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG47_RS19665 (4063368) | 4063368..4064114 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| QCG47_RS19670 (4064203) | 4064203..4064889 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QCG47_RS19675 (4065066) | 4065066..4065269 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QCG47_RS19680 (4065304) | 4065304..4066764 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QCG47_RS19685 (4066853) | 4066853..4068220 | - | 1368 | Protein_3825 | MHS family MFS transporter | - |
| QCG47_RS19690 (4068741) | 4068741..4068854 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG47_RS19695 (4068923) | 4068923..4069156 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QCG47_RS19700 (4069473) | 4069473..4070063 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG47_RS19705 (4070161) | 4070161..4070736 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QCG47_RS19710 (4070736) | 4070736..4071698 | - | 963 | WP_001027733.1 | phage tail protein | - |
| QCG47_RS19715 (4071649) | 4071649..4072218 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QCG47_RS19720 (4072607) | 4072607..4072840 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QCG47_RS19725 (4072898) | 4072898..4073308 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QCG47_RS19730 (4073460) | 4073460..4073633 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QCG47_RS19735 (4074039) | 4074039..4074104 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| QCG47_RS19740 (4074107) | 4074107..4074295 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| QCG47_RS19745 (4074306) | 4074306..4074518 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QCG47_RS19750 (4074881) | 4074881..4075378 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QCG47_RS19755 (4075375) | 4075375..4075908 | - | 534 | WP_001092971.1 | lysozyme | - |
| QCG47_RS19760 (4075905) | 4075905..4076216 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| QCG47_RS19765 (4076221) | 4076221..4076436 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QCG47_RS19770 (4076656) | 4076656..4076826 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG47_RS19775 (4077190) | 4077190..4077405 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG47_RS19780 (4077706) | 4077706..4077918 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG47_RS19785 (4077973) | 4077973..4078062 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG47_RS19790 (4078340) | 4078340..4079092 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QCG47_RS19795 (4079106) | 4079106..4080155 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG47_RS19800 (4080157) | 4080157..4080435 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG47_RS19805 (4080502) | 4080502..4080753 | - | 252 | WP_000980994.1 | protein Rem | - |
| QCG47_RS19810 (4080970) | 4080970..4081125 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG47_RS19815 (4081197) | 4081197..4081484 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QCG47_RS19820 (4081484) | 4081484..4081723 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QCG47_RS19825 (4081748) | 4081748..4082053 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QCG47_RS19830 (4082256) | 4082256..4082588 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG47_RS19835 (4083025) | 4083025..4083174 | - | 150 | WP_011443592.1 | protein YdfW | - |
| QCG47_RS19840 (4083209) | 4083209..4083487 | - | 279 | Protein_3856 | protein YdfX | - |
| QCG47_RS19845 (4083471) | 4083471..4083701 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG47_RS19850 (4083785) | 4083785..4084192 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG47_RS19855 (4084359) | 4084359..4084514 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG47_RS19860 (4084516) | 4084516..4084644 | + | 129 | WP_000344964.1 | protein YdfB | - |
| QCG47_RS19865 (4084674) | 4084674..4084892 | + | 219 | WP_001171942.1 | protein YdfC | - |
| QCG47_RS19870 (4085460) | 4085460..4085648 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG47_RS19875 (4085645) | 4085645..4085836 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG47_RS19880 (4085929) | 4085929..4086696 | + | 768 | Protein_3864 | exonuclease | - |
| QCG47_RS19885 (4086693) | 4086693..4087388 | + | 696 | Protein_3865 | IS3 family transposase IS2 | Transposase |
| QCG47_RS19890 (4087402) | 4087402..4088559 | + | 1158 | Protein_3866 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG47_RS19895 (4088747) | 4088747..4089766 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QCG47_RS19900 (4089778) | 4089778..4090992 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QCG47_RS19905 (4091198) | 4091198..4091524 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| QCG47_RS19910 (4091659) | 4091659..4092000 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QCG47_RS19915 (4092035) | 4092035..4092595 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QCG47_RS19920 (4092598) | 4092598..4093308 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| QCG47_RS19925 (4093416) | 4093416..4093721 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |