MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP122315 Location: 3042452..3064158 Organism: Escherichia coli strain HT-947 Replicon: chromosome
Accession: NZ_CP122315 Location: 3042452..3064158 Organism: Escherichia coli strain HT-947 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG46_RS14865 (3038967) | 3038967..3039713 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| QCG46_RS14870 (3039802) | 3039802..3040488 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| QCG46_RS14875 (3040665) | 3040665..3040868 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| QCG46_RS14880 (3040903) | 3040903..3042363 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| QCG46_RS14885 (3042452) | 3042452..3043819 | - | 1368 | Protein_2891 | MHS family MFS transporter | - |
| QCG46_RS14890 (3044340) | 3044340..3044453 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| QCG46_RS14895 (3044522) | 3044522..3044755 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| QCG46_RS14900 (3045072) | 3045072..3045662 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| QCG46_RS14905 (3045760) | 3045760..3046335 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| QCG46_RS14910 (3046335) | 3046335..3047297 | - | 963 | WP_001027733.1 | phage tail protein | - |
| QCG46_RS14915 (3047248) | 3047248..3047817 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| QCG46_RS14920 (3048206) | 3048206..3048439 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| QCG46_RS14925 (3048497) | 3048497..3048907 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| QCG46_RS14930 (3049059) | 3049059..3049232 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| QCG46_RS14935 (3049404) | 3049404..3049559 | - | 156 | WP_001309517.1 | protein YnfN | - |
| QCG46_RS14940 (3049638) | 3049638..3049703 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| QCG46_RS14945 (3049706) | 3049706..3049894 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| QCG46_RS14950 (3049905) | 3049905..3050117 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| QCG46_RS14955 (3050480) | 3050480..3050977 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| QCG46_RS14960 (3050974) | 3050974..3051507 | - | 534 | WP_001092971.1 | lysozyme | - |
| QCG46_RS14965 (3051504) | 3051504..3051815 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| QCG46_RS14970 (3051820) | 3051820..3052035 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QCG46_RS14975 (3052255) | 3052255..3052425 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG46_RS14980 (3052789) | 3052789..3053004 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG46_RS14985 (3053305) | 3053305..3053517 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG46_RS14990 (3053572) | 3053572..3053661 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG46_RS14995 (3053939) | 3053939..3054691 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QCG46_RS15000 (3054705) | 3054705..3055754 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG46_RS15005 (3055756) | 3055756..3056034 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG46_RS15010 (3056101) | 3056101..3056352 | - | 252 | WP_000980994.1 | protein Rem | - |
| QCG46_RS15015 (3056569) | 3056569..3056724 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG46_RS15020 (3056796) | 3056796..3057083 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| QCG46_RS15025 (3057083) | 3057083..3057322 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| QCG46_RS15030 (3057347) | 3057347..3057652 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QCG46_RS15035 (3057855) | 3057855..3058187 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG46_RS15040 (3058624) | 3058624..3058773 | - | 150 | WP_011443592.1 | protein YdfW | - |
| QCG46_RS15045 (3058808) | 3058808..3059086 | - | 279 | Protein_2923 | protein YdfX | - |
| QCG46_RS15050 (3059070) | 3059070..3059300 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG46_RS15055 (3059384) | 3059384..3059791 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG46_RS15060 (3059958) | 3059958..3060113 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG46_RS15065 (3060115) | 3060115..3060243 | + | 129 | WP_000344964.1 | protein YdfB | - |
| QCG46_RS15070 (3060273) | 3060273..3060491 | + | 219 | WP_001171942.1 | protein YdfC | - |
| QCG46_RS15075 (3061059) | 3061059..3061247 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG46_RS15080 (3061244) | 3061244..3061435 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG46_RS15085 (3061528) | 3061528..3062295 | + | 768 | Protein_2931 | exonuclease | - |
| QCG46_RS15090 (3062292) | 3062292..3062987 | + | 696 | Protein_2932 | IS3 family transposase IS2 | Transposase |
| QCG46_RS15095 (3063001) | 3063001..3064158 | + | 1158 | Protein_2933 | Putative defective protein IntQ ; Integrase | Integrase |
| QCG46_RS15100 (3064346) | 3064346..3065365 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| QCG46_RS15105 (3065377) | 3065377..3066591 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| QCG46_RS15110 (3066797) | 3066797..3067123 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| QCG46_RS15115 (3067258) | 3067258..3067599 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| QCG46_RS15120 (3067634) | 3067634..3068194 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| QCG46_RS15125 (3068197) | 3068197..3068907 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |