MGE detailed information
MGE type: Prophage MGE length: 14004 bp
Accession: NZ_CP121223 Location: 3995395..4009398 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Accession: NZ_CP121223 Location: 3995395..4009398 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5F89_RS21935 (3991238) | 3991238..3992002 | - | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| P5F89_RS21940 (3992321) | 3992321..3992800 | + | 480 | Protein_3865 | cupin domain-containing protein | - |
| P5F89_RS21945 (3992855) | 3992855..3993552 | + | 698 | WP_227804325.1 | IS1 family transposase | - |
| P5F89_RS21950 (3993546) | 3993546..3993713 | - | 168 | WP_005062520.1 | hypothetical protein | - |
| P5F89_RS21955 (3994115) | 3994115..3994876 | - | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| P5F89_RS21960 (3994944) | 3994944..3995147 | - | 204 | WP_000543395.1 | two-component system connector SafA | - |
| P5F89_RS21965 (3995395) | 3995395..3997674 | - | 2280 | WP_000726666.1 | acid resistance putative oxidoreductase YdeP | - |
| P5F89_RS21970 (3998008) | 3998008..3998757 | - | 750 | Protein_3871 | Type 1 fimbrin D-mannose specific adhesin | VF |
| P5F89_RS21975 (3998813) | 3998813..3999510 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| P5F89_RS21980 (3999528) | 3999528..4000406 | + | 879 | Protein_3873 | IS3 family transposase IS600 | Transposase |
| P5F89_RS21985 (4000403) | 4000403..4000708 | - | 306 | WP_071818640.1 | hypothetical protein | - |
| P5F89_RS21990 (4000733) | 4000733..4000972 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| P5F89_RS21995 (4000972) | 4000972..4001259 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| P5F89_RS22000 (4001331) | 4001331..4001486 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| P5F89_RS22005 (4001704) | 4001704..4001955 | + | 252 | WP_000980987.1 | protein Rem | - |
| P5F89_RS22010 (4002022) | 4002022..4002300 | + | 279 | Protein_3879 | hypothetical protein | - |
| P5F89_RS22015 (4002302) | 4002302..4003351 | + | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| P5F89_RS22020 (4003364) | 4003364..4003720 | + | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P5F89_RS22025 (4003735) | 4003735..4004556 | + | 822 | WP_000762882.1 | antitermination protein | - |
| P5F89_RS22040 (4005477) | 4005477..4005585 | + | 109 | Protein_3883 | DUF3927 family protein | - |
| P5F89_RS22045 (4005866) | 4005866..4006201 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| P5F89_RS22050 (4006461) | 4006461..4006646 | + | 186 | Protein_3885 | DUF1737 domain-containing protein | - |
| P5F89_RS22055 (4006646) | 4006646..4006807 | + | 162 | WP_001323614.1 | hypothetical protein | - |
| P5F89_RS22060 (4006957) | 4006957..4007136 | + | 180 | WP_000372594.1 | class II holin family protein | - |
| P5F89_RS22070 (4008379) | 4008379..4009398 | + | 1020 | Protein_3889 | MHS family MFS transporter YdfJ | - |
| P5F89_RS22075 (4009487) | 4009487..4010947 | + | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| P5F89_RS22080 (4010983) | 4010983..4011186 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| P5F89_RS22085 (4011364) | 4011364..4012050 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| P5F89_RS22090 (4012139) | 4012139..4012885 | - | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |