MGE detailed information
MGE type: Genomic_island MGE length: 19745 bp
Accession: NZ_CP121223 Location: 1362026..1381770 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Accession: NZ_CP121223 Location: 1362026..1381770 Organism: Shigella flexneri 2a strain Sflex 21-42 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5F89_RS08765 (1358158) | 1358158..1359102 | + | 945 | WP_000947076.1 | nickel ABC transporter permease subunit NikB | - |
| P5F89_RS08770 (1359099) | 1359099..1359932 | + | 834 | WP_001008973.1 | nickel ABC transporter permease subunit NikC | - |
| P5F89_RS08775 (1359932) | 1359932..1360696 | + | 765 | WP_001136253.1 | nickel import ATP-binding protein NikD | - |
| P5F89_RS08780 (1360693) | 1360693..1361499 | + | 807 | WP_000173660.1 | nickel import ATP-binding protein NikE | - |
| P5F89_RS08785 (1361505) | 1361505..1361906 | + | 402 | WP_001190062.1 | nickel-responsive transcriptional regulator NikR | - |
| P5F89_RS08790 (1362026) | 1362026..1362385 | - | 360 | WP_000593555.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| P5F89_RS08795 (1362382) | 1362382..1362657 | - | 276 | WP_001259384.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| P5F89_RS08800 (1362716) | 1362716..1363840 | - | 1125 | WP_001216257.1 | ABC transporter permease | - |
| P5F89_RS08805 (1363840) | 1363840..1366575 | - | 2736 | WP_000149170.1 | Ribosome-associated ATPase | VF |
| P5F89_RS08810 (1366572) | 1366572..1367639 | - | 1068 | WP_000361470.1 | HlyD family secretion protein | - |
| P5F89_RS08815 (1367702) | 1367702..1367815 | - | 114 | WP_001296785.1 | protein YhiY | - |
| P5F89_RS08820 (1368005) | 1368005..1369627 | - | 1623 | WP_005052620.1 | DUF4049 domain-containing protein | - |
| P5F89_RS08825 (1369889) | 1369889..1371478 | - | 1590 | WP_000643692.1 | DUF4049 domain-containing protein | - |
| P5F89_RS08830 (1371895) | 1371895..1372893 | + | 999 | Protein_1320 | DUF2776 family protein | - |
| P5F89_RS08835 (1372980) | 1372980..1373456 | - | 477 | WP_000182502.1 | hypothetical protein | - |
| P5F89_RS08840 (1373449) | 1373449..1374213 | - | 765 | WP_000442140.1 | winged helix-turn-helix domain-containing protein | - |
| P5F89_RS08845 (1374459) | 1374459..1375220 | + | 762 | Protein_1323 | hypothetical protein | VF |
| P5F89_RS08850 (1375327) | 1375327..1375839 | - | 513 | WP_000751953.1 | hypothetical protein | - |
| P5F89_RS08855 (1375978) | 1375978..1377126 | - | 1149 | WP_005052604.1 | F1 capsule-anchoring protein | VF |
| P5F89_RS08860 (1377218) | 1377218..1378446 | + | 1229 | WP_167547300.1 | IS3 family transposase IS2 | Transposase |
| P5F89_RS08865 (1378685) | 1378685..1379764 | - | 1080 | WP_005052551.1 | F1 capsule-anchoring protein | VF |
| P5F89_RS08870 (1379808) | 1379808..1380569 | - | 762 | WP_005090407.1 | Chaperone protein caf1M | VF |
| P5F89_RS08875 (1381036) | 1381036..1381770 | - | 735 | WP_000245840.1 | helix-turn-helix transcriptional regulator | - |
| P5F89_RS08880 (1381770) | 1381770..1383044 | - | 1275 | WP_005052544.1 | O-antigen ligase family protein | - |
| P5F89_RS08885 (1383060) | 1383060..1383352 | + | 293 | Protein_1331 | transposase | - |
| P5F89_RS08895 (1384596) | 1384596..1385795 | - | 1200 | WP_000439213.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Genomic island | TA120378 | NZ_CP037923 | 4222298..4243335 | 0.003 |