MGE detailed information
MGE type: Genomic_island MGE length: 11458 bp
Accession: NZ_CP121189 Location: 1100088..1111545 Organism: Salmonella enterica subsp. enterica serovar Indiana strain S1467 Replicon: chromosome
Accession: NZ_CP121189 Location: 1100088..1111545 Organism: Salmonella enterica subsp. enterica serovar Indiana strain S1467 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P6164_RS05315 (1097670) | 1097670..1098068 | + | 399 | Protein_1043 | cytoplasmic protein | - |
| P6164_RS05320 (1098654) | 1098654..1099322 | + | 669 | WP_000445914.1 | hypothetical protein | - |
| P6164_RS05325 (1099349) | 1099349..1099843 | + | 495 | WP_023227564.1 | hypothetical protein | - |
| P6164_RS05330 (1100088) | 1100088..1100744 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| P6164_RS05335 (1101079) | 1101079..1101296 | + | 218 | Protein_1047 | IS5 family transposase ISEcl3 | Transposase |
| P6164_RS05340 (1101369) | 1101369..1101896 | - | 528 | WP_023227563.1 | GNAT family N-acetyltransferase | Toxin Detail |
| P6164_RS05345 (1101893) | 1101893..1102183 | - | 291 | WP_072162154.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| P6164_RS05350 (1102453) | 1102453..1102631 | - | 179 | Protein_1050 | IS3 family transposase | - |
| P6164_RS05355 (1102872) | 1102872..1103198 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| P6164_RS05360 (1103471) | 1103471..1103818 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| P6164_RS05365 (1103803) | 1103803..1104252 | - | 450 | WP_000381610.1 | membrane protein | - |
| P6164_RS05370 (1104683) | 1104683..1105126 | - | 444 | WP_000715096.1 | Type 3 secretion system pilotin | VF |
| P6164_RS05375 (1105582) | 1105582..1106232 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| P6164_RS05380 (1106229) | 1106229..1107917 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| P6164_RS05385 (1107914) | 1107914..1109032 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| P6164_RS05390 (1109057) | 1109057..1111114 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| P6164_RS05395 (1111138) | 1111138..1111545 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| P6164_RS05400 (1111542) | 1111542..1112837 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| P6164_RS05405 (1112815) | 1112815..1113258 | + | 444 | WP_000555884.1 | SPI-1 type III secretion system protein SpaM | - |
| P6164_RS05410 (1113258) | 1113258..1114268 | + | 1011 | WP_001619772.1 | SPI-1 type III secretion system protein SpaN | - |
| P6164_RS05415 (1114268) | 1114268..1115179 | + | 912 | WP_000058736.1 | SPI-1 type III secretion system protein SpaO | - |
| P6164_RS05420 (1115169) | 1115169..1115843 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| P6164_RS05425 (1115869) | 1115869..1116129 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.009 |