MGE detailed information
MGE type: Prophage MGE length: 56582 bp
Accession: NZ_CP120944 Location: 2398865..2455446 Organism: Escherichia coli O157:H7 str. EDL933 Replicon: chromosome
Accession: NZ_CP120944 Location: 2398865..2455446 Organism: Escherichia coli O157:H7 str. EDL933 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P7249_RS11950 (2394765) | 2394765..2395985 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| P7249_RS11955 (2396110) | 2396110..2396805 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| P7249_RS11960 (2396758) | 2396758..2398050 | - | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| P7249_RS11965 (2398208) | 2398208..2398822 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| P7249_RS11970 (2398865) | 2398865..2399719 | - | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| P7249_RS11975 (2399721) | 2399721..2400338 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| P7249_RS11980 (2400349) | 2400349..2402772 | - | 2424 | WP_001414236.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P7249_RS11985 (2402833) | 2402833..2405259 | - | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| P7249_RS11990 (2405458) | 2405458..2405763 | - | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| P7249_RS11995 (2405871) | 2405871..2406581 | + | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| P7249_RS12000 (2406584) | 2406584..2407144 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| P7249_RS12005 (2407179) | 2407179..2407520 | - | 342 | WP_000705189.1 | DUF1283 family protein | - |
| P7249_RS12010 (2407655) | 2407655..2407981 | + | 327 | WP_001302046.1 | YnfA family protein | - |
| P7249_RS12015 (2408187) | 2408187..2408273 | + | 87 | Protein_2351 | hypothetical protein | - |
| P7249_RS12020 (2408253) | 2408253..2408935 | - | 683 | Protein_2352 | DUF3596 domain-containing protein | - |
| P7249_RS12025 (2408970) | 2408970..2409221 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| P7249_RS12030 (2409294) | 2409294..2411765 | - | 2472 | WP_000048458.1 | exonuclease | - |
| P7249_RS12035 (2411858) | 2411858..2412049 | - | 192 | WP_001090200.1 | DUF1482 family protein | - |
| P7249_RS12040 (2412046) | 2412046..2412234 | - | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| P7249_RS12045 (2412803) | 2412803..2413021 | - | 219 | WP_001171930.1 | protein YdfC | - |
| P7249_RS12050 (2413093) | 2413093..2413392 | - | 300 | WP_001240334.1 | hypothetical protein | - |
| P7249_RS12055 (2413745) | 2413745..2414023 | - | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| P7249_RS12060 (2414025) | 2414025..2414216 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| P7249_RS12065 (2414237) | 2414237..2414608 | - | 372 | WP_001169686.1 | hypothetical protein | - |
| P7249_RS12070 (2414706) | 2414706..2415008 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| P7249_RS12075 (2415005) | 2415005..2415430 | + | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| P7249_RS12080 (2415453) | 2415453..2416415 | + | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| P7249_RS12085 (2416422) | 2416422..2417162 | + | 741 | WP_000788938.1 | ATP-binding protein | - |
| P7249_RS12090 (2417188) | 2417188..2417957 | + | 770 | Protein_2366 | DUF1627 domain-containing protein | - |
| P7249_RS12095 (2417973) | 2417973..2418368 | + | 396 | WP_001118159.1 | DUF977 family protein | - |
| P7249_RS12100 (2418425) | 2418425..2419009 | + | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| P7249_RS12105 (2419125) | 2419125..2419229 | + | 105 | WP_001278450.1 | hypothetical protein | - |
| P7249_RS12110 (2419475) | 2419475..2419630 | + | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| P7249_RS12115 (2419798) | 2419798..2420076 | + | 279 | WP_001341388.1 | hypothetical protein | - |
| P7249_RS12120 (2420078) | 2420078..2421127 | + | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| P7249_RS12125 (2421140) | 2421140..2421499 | + | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| P7249_RS12130 (2421496) | 2421496..2422185 | + | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| P7249_RS12150 (2422819) | 2422819..2423247 | + | 429 | WP_001303509.1 | tellurite resistance protein | - |
| P7249_RS12155 (2423244) | 2423244..2423411 | + | 168 | WP_000216653.1 | DUF3927 family protein | - |
| P7249_RS12160 (2423606) | 2423606..2423749 | - | 144 | Protein_2377 | hypothetical protein | - |
| P7249_RS12165 (2423726) | 2423726..2425576 | + | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| P7249_RS12170 (2426016) | 2426016..2426231 | + | 216 | WP_024180155.1 | class II holin family protein | - |
| P7249_RS12175 (2426236) | 2426236..2426580 | + | 345 | WP_000731259.1 | YdfR family protein | - |
| P7249_RS12180 (2426631) | 2426631..2427164 | + | 534 | WP_000992137.1 | lysozyme | - |
| P7249_RS12185 (2427435) | 2427435..2428004 | + | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| P7249_RS12190 (2428004) | 2428004..2428150 | + | 147 | WP_000539792.1 | hypothetical protein | - |
| P7249_RS12195 (2428378) | 2428378..2428563 | + | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| P7249_RS12200 (2428988) | 2428988..2429215 | - | 228 | WP_000095736.1 | YlcI/YnfO family protein | - |
| P7249_RS12205 (2429257) | 2429257..2429622 | + | 366 | WP_000279786.1 | HNH endonuclease | - |
| P7249_RS12210 (2429912) | 2429912..2430475 | + | 564 | WP_000958416.1 | terminase small subunit | - |
| P7249_RS12215 (2430472) | 2430472..2432133 | + | 1662 | WP_001507810.1 | terminase large subunit | - |
| P7249_RS12220 (2432197) | 2432197..2434134 | + | 1938 | WP_000173030.1 | phage major capsid protein | - |
| P7249_RS12225 (2434179) | 2434179..2434400 | + | 222 | WP_001063094.1 | hypothetical protein | - |
| P7249_RS12230 (2434346) | 2434346..2436925 | + | 2580 | WP_001304108.1 | phage portal protein | - |
| P7249_RS12235 (2436928) | 2436928..2437254 | + | 327 | WP_000125988.1 | head-tail connector protein | - |
| P7249_RS12240 (2437264) | 2437264..2437614 | + | 351 | WP_001007905.1 | phage head closure protein | - |
| P7249_RS12245 (2437611) | 2437611..2438057 | + | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| P7249_RS12250 (2438054) | 2438054..2438398 | + | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| P7249_RS12255 (2438464) | 2438464..2439180 | + | 717 | WP_277857259.1 | major tail subunit | - |
| P7249_RS12260 (2439186) | 2439186..2439560 | + | 375 | WP_001030063.1 | phage tail assembly chaperone | - |
| P7249_RS12265 (2439656) | 2439656..2439865 | + | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| P7249_RS12270 (2439918) | 2439918..2443160 | + | 3243 | WP_277857260.1 | phage tail tape measure protein | - |
| P7249_RS12275 (2443153) | 2443153..2443494 | + | 342 | WP_000807954.1 | phage tail protein | - |
| P7249_RS12280 (2443494) | 2443494..2444192 | + | 699 | WP_001179481.1 | phage minor tail protein L | - |
| P7249_RS12285 (2444203) | 2444203..2444946 | + | 744 | WP_000194720.1 | C40 family peptidase | - |
| P7249_RS12290 (2444943) | 2444943..2445524 | + | 582 | WP_001090033.1 | tail assembly protein | - |
| P7249_RS12295 (2445866) | 2445866..2449338 | + | 3473 | Protein_2404 | host specificity protein J | - |
| P7249_RS12300 (2449406) | 2449406..2450005 | + | 600 | WP_001228304.1 | Outer membrane protein X | VF |
| P7249_RS12305 (2450157) | 2450157..2451470 | + | 1314 | WP_000216532.1 | ISNCY family transposase KIS | Transposase |
| P7249_RS12310 (2451472) | 2451472..2451741 | + | 270 | WP_001023474.1 | phage tail fiber C-terminal domain-containing protein | - |
| P7249_RS12315 (2451854) | 2451854..2452428 | + | 575 | Protein_2408 | hypothetical protein | VF |
| P7249_RS12320 (2452768) | 2452768..2454093 | - | 1326 | WP_001025672.1 | hypothetical protein | VF |
| P7249_RS12325 (2454754) | 2454754..2455748 | - | 995 | Protein_2410 | hypothetical protein ; Integrase | Integrase |
| P7249_RS12330 (2455742) | 2455742..2455813 | + | 72 | Protein_2411 | phage tail fiber C-terminal domain-containing protein | - |
| P7249_RS12335 (2455920) | 2455920..2456831 | + | 912 | WP_000950979.1 | type III secretion system effector kinase NleH1-2 | - |
| P7249_RS12340 (2456897) | 2456897..2457466 | + | 570 | WP_000938103.1 | T3SS effector caspase inhibitor NleF | - |
| P7249_RS12345 (2457513) | 2457513..2458147 | - | 635 | Protein_2414 | transposase | - |
| P7249_RS12350 (2458432) | 2458432..2459970 | - | 1539 | WP_000998048.1 | IS66-like element ISEc8 family transposase | - |
| P7249_RS12355 (2460020) | 2460020..2460367 | - | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | Prophage | TA20321 | NC_002655 | 2282958..2329636 | 0.006 |