MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 83235 bp
Accession: NZ_CP119123 Location: 1..83235 Organism: Escherichia coli strain GENOMIC22-004 Replicon: plasmid pCFSAN126949_02
Accession: NZ_CP119123 Location: 1..83235 Organism: Escherichia coli strain GENOMIC22-004 Replicon: plasmid pCFSAN126949_02
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYZ88_RS24745 (303) | 303..533 | - | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| PYZ88_RS24750 (1093) | 1093..1311 | + | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PYZ88_RS24755 (1313) | 1313..1618 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PYZ88_RS24760 (1619) | 1619..2425 | + | 807 | WP_000016970.1 | site-specific integrase | - |
| PYZ88_RS24765 (3147) | 3147..3902 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| PYZ88_RS24770 (4490) | 4490..5656 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| PYZ88_RS24775 (5656) | 5656..6627 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| PYZ88_RS24780 (7365) | 7365..8267 | + | 903 | WP_064766247.1 | DUF1281 domain-containing protein | - |
| PYZ88_RS24785 (8264) | 8264..8575 | + | 312 | WP_012615291.1 | hypothetical protein | - |
| PYZ88_RS24790 (8652) | 8652..9335 | + | 684 | WP_122657731.1 | DNA methylase | - |
| PYZ88_RS24795 (9336) | 9336..9557 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PYZ88_RS24800 (9487) | 9487..10005 | + | 519 | WP_223349485.1 | DUF1380 family protein | - |
| PYZ88_RS24805 (10050) | 10050..10820 | + | 771 | WP_001006251.1 | hypothetical protein | - |
| PYZ88_RS24810 (11234) | 11234..11659 | + | 426 | WP_001546490.1 | antirestriction protein | - |
| PYZ88_RS24815 (11706) | 11706..12128 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| PYZ88_RS24820 (12125) | 12125..12316 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| PYZ88_RS24825 (12588) | 12588..12836 | - | 249 | WP_071781657.1 | hypothetical protein | - |
| PYZ88_RS24830 (13348) | 13348..13578 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| PYZ88_RS24835 (13630) | 13630..14991 | + | 1362 | WP_000199439.1 | DUF3560 domain-containing protein | - |
| PYZ88_RS24840 (15039) | 15039..15604 | + | 566 | Protein_20 | class I SAM-dependent methyltransferase | - |
| PYZ88_RS24845 (15630) | 15630..15836 | + | 207 | WP_001774176.1 | hypothetical protein | - |
| PYZ88_RS24850 (15755) | 15755..16006 | + | 252 | WP_071579736.1 | hypothetical protein | - |
| PYZ88_RS24855 (16246) | 16246..16452 | + | 207 | WP_000275856.1 | hypothetical protein | - |
| PYZ88_RS24860 (17130) | 17130..19031 | + | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| PYZ88_RS24865 (19181) | 19181..19678 | + | 498 | WP_042039995.1 | single-stranded DNA-binding protein | - |
| PYZ88_RS24870 (19694) | 19694..19831 | + | 138 | Protein_26 | Multifunctional conjugation protein TraI | Relaxase |
| PYZ88_RS24875 (19765) | 19765..20346 | + | 582 | Protein_27 | Multifunctional conjugation protein TraI | Relaxase |
| PYZ88_RS24880 (20366) | 20366..21112 | + | 747 | WP_023149624.1 | conjugal transfer pilus acetylase TraX | - |
| PYZ88_RS24885 (21167) | 21167..21727 | + | 561 | WP_000139363.1 | fertility inhibition protein FinO | - |
| PYZ88_RS24890 (21861) | 21861..22073 | + | 213 | WP_005012601.1 | hypothetical protein | - |
| PYZ88_RS24895 (22374) | 22374..22463 | - | 90 | Protein_31 | IS1 family transposase | - |
| PYZ88_RS24900 (22518) | 22518..23195 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| PYZ88_RS24905 (23195) | 23195..23542 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| PYZ88_RS24910 (23562) | 23562..25133 | + | 1572 | WP_023149734.1 | IS66 family transposase ISCro1 | Transposase |
| PYZ88_RS24915 (25171) | 25171..25787 | - | 617 | Protein_35 | IS1-like element IS1A family transposase | - |
| PYZ88_RS24920 (25888) | 25888..26070 | + | 183 | WP_000968309.1 | hypothetical protein | - |
| - (26209) | 26209..26270 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (26209) | 26209..26270 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (26209) | 26209..26270 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| - (26209) | 26209..26270 | - | 62 | NuclAT_0 | - | Antitoxin Detail |
| PYZ88_RS24925 (26314) | 26314..26463 | + | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| PYZ88_RS24930 (26747) | 26747..27004 | + | 258 | WP_000083833.1 | replication regulatory protein RepA | - |
| PYZ88_RS24935 (27240) | 27240..27314 | + | 75 | WP_032336874.1 | RepA leader peptide Tap | - |
| PYZ88_RS24940 (27307) | 27307..27753 | + | 447 | Protein_40 | plasmid replication initiator RepA | - |
| PYZ88_RS24945 (27753) | 27753..28367 | - | 615 | Protein_41 | VENN motif pre-toxin domain-containing protein | - |
| PYZ88_RS24950 (29074) | 29074..30294 | + | 1221 | WP_000410951.1 | arginine deiminase | - |
| PYZ88_RS24955 (30305) | 30305..31216 | + | 912 | WP_000440183.1 | carbamate kinase | - |
| PYZ88_RS24960 (31301) | 31301..32305 | + | 1005 | WP_000154545.1 | Ornithine carbamoyltransferase | VF |
| PYZ88_RS24965 (32353) | 32353..33756 | + | 1404 | WP_000514417.1 | YfcC family protein | - |
| PYZ88_RS24970 (33837) | 33837..34316 | + | 480 | WP_001496175.1 | ArgR family transcriptional regulator | - |
| PYZ88_RS24975 (34380) | 34380..34721 | - | 342 | Protein_47 | IS66 family transposase IS682 | Transposase |
| PYZ88_RS24980 (34673) | 34673..34894 | - | 222 | WP_000080227.1 | IS66 family transposase ISEc43 | Transposase |
| PYZ88_RS24985 (34925) | 34925..35275 | - | 351 | WP_000624725.1 | IS66 family transposase ISEc47 | Transposase |
| PYZ88_RS24990 (35272) | 35272..35628 | - | 357 | WP_000229735.1 | IS66 family transposase ISEc23 | Transposase |
| PYZ88_RS25000 (36473) | 36473..37051 | + | 579 | WP_032152936.1 | DUF2726 domain-containing protein | - |
| PYZ88_RS25005 (37464) | 37464..37817 | - | 354 | WP_000005489.1 | hypothetical protein | - |
| PYZ88_RS25010 (38289) | 38289..39311 | - | 1023 | WP_000156883.1 | IS110 family transposase ISSm1 | Transposase |
| PYZ88_RS25015 (39716) | 39716..39973 | + | 258 | WP_000083821.1 | replication regulatory protein RepA | - |
| PYZ88_RS25020 (40208) | 40208..40282 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| PYZ88_RS25025 (40275) | 40275..41132 | + | 858 | WP_032152935.1 | incFII family plasmid replication initiator RepA | - |
| PYZ88_RS25030 (42071) | 42071..42724 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| PYZ88_RS25035 (42817) | 42817..43074 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| PYZ88_RS25040 (43007) | 43007..43408 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| PYZ88_RS25045 (43545) | 43545..45578 | - | 2034 | Protein_61 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| PYZ88_RS25050 (45616) | 45616..46320 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PYZ88_RS25055 (46384) | 46384..46446 | - | 63 | Protein_63 | PadR family transcriptional regulator | - |
| PYZ88_RS25060 (46457) | 46457..47524 | - | 1068 | Protein_64 | chromate efflux transporter | - |
| PYZ88_RS25065 (47578) | 47578..48282 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PYZ88_RS25070 (48307) | 48307..48681 | + | 375 | WP_024193849.1 | IS66 family transposase ISKpn24 | Transposase |
| PYZ88_RS25075 (48730) | 48730..49675 | + | 946 | Protein_67 | IS66 family transposase ISEc8 | Transposase |
| PYZ88_RS25080 (49761) | 49761..50783 | + | 1023 | WP_000255956.1 | IS21 family transposase IS100kyp | Transposase |
| PYZ88_RS25085 (50780) | 50780..51562 | + | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| PYZ88_RS25090 (51630) | 51630..52238 | + | 609 | Protein_70 | IS66 family transposase ISEc22 | Transposase |
| PYZ88_RS25095 (52301) | 52301..53092 | - | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| PYZ88_RS25100 (53099) | 53099..55069 | - | 1971 | WP_001496335.1 | Hemin receptor | VF |
| PYZ88_RS25105 (55351) | 55351..55775 | + | 425 | Protein_73 | IS3 family transposase IS2 | Transposase |
| PYZ88_RS25110 (56312) | 56312..56584 | + | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| PYZ88_RS25115 (57030) | 57030..57205 | + | 176 | Protein_75 | IS3 family transposase | - |
| PYZ88_RS25120 (57431) | 57431..58600 | - | 1170 | WP_001072358.1 | hypothetical protein | - |
| PYZ88_RS25125 (58967) | 58967..59155 | + | 189 | WP_001309252.1 | hypothetical protein | - |
| PYZ88_RS25130 (59276) | 59276..60016 | + | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| PYZ88_RS25135 (60301) | 60301..61278 | - | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| PYZ88_RS25140 (62024) | 62024..62347 | + | 324 | Protein_80 | IS21 family transposase IS21 | Transposase |
| PYZ88_RS25145 (62349) | 62349..62453 | + | 105 | Protein_81 | AAA family ATPase | - |
| PYZ88_RS25150 (62514) | 62514..63027 | + | 514 | Protein_82 | DUF4113 domain-containing protein | - |
| PYZ88_RS25160 (64260) | 64260..65174 | + | 915 | WP_000949005.1 | putative periplasmic iron-binding protein | VF |
| PYZ88_RS25165 (65174) | 65174..66001 | + | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| PYZ88_RS25170 (65998) | 65998..66855 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| PYZ88_RS25175 (66852) | 66852..67709 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| PYZ88_RS25180 (67943) | 67943..68200 | - | 258 | Protein_88 | Tn3 family transposase | - |
| PYZ88_RS25185 (68198) | 68198..68611 | + | 414 | Protein_89 | phosphopyruvate hydratase | - |
| PYZ88_RS25190 (68952) | 68952..69332 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| PYZ88_RS25195 (69712) | 69712..70905 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| PYZ88_RS25200 (71041) | 71041..72765 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| PYZ88_RS25205 (72766) | 72766..73713 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| PYZ88_RS25210 (73713) | 73713..75455 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| PYZ88_RS25215 (75452) | 75452..76785 | + | 1334 | Protein_95 | L-lysine N6-monooxygenase | VF |
| PYZ88_RS25220 (76811) | 76811..79012 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| PYZ88_RS25225 (79538) | 79538..80224 | + | 687 | Protein_97 | IS1 family transposase IS1S | Transposase |
| PYZ88_RS25230 (80478) | 80478..81500 | - | 1023 | WP_000361402.1 | helicase UvrD | - |
| PYZ88_RS25235 (81485) | 81485..83050 | - | 1566 | WP_001128474.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|