MGE detailed information
MGE type: Prophage MGE length: 23494 bp
Accession: NZ_CP117962 Location: 6709..30202 Organism: Escherichia coli strain JM109 Replicon: chromosome
Accession: NZ_CP117962 Location: 6709..30202 Organism: Escherichia coli strain JM109 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT299_RS01220 (1960) | 1960..2670 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| PT299_RS01225 (2673) | 2673..3233 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| PT299_RS01230 (3268) | 3268..3609 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| PT299_RS01235 (3744) | 3744..4070 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| PT299_RS01240 (4276) | 4276..5490 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| PT299_RS01245 (5502) | 5502..6521 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| PT299_RS01250 (6709) | 6709..7866 | - | 1158 | Protein_8 | Putative defective protein IntQ ; Integrase | Integrase |
| PT299_RS01255 (7880) | 7880..8575 | - | 696 | Protein_9 | IS3 family transposase IS2 | Transposase |
| PT299_RS01260 (8572) | 8572..9339 | - | 768 | Protein_10 | exonuclease | - |
| PT299_RS01265 (9432) | 9432..9623 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| PT299_RS01270 (9620) | 9620..9808 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| PT299_RS01275 (10376) | 10376..10594 | - | 219 | WP_001171942.1 | protein YdfC | - |
| PT299_RS01280 (10624) | 10624..10752 | - | 129 | WP_000344964.1 | protein YdfB | - |
| PT299_RS01285 (10754) | 10754..10909 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| PT299_RS01290 (11076) | 11076..11483 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| PT299_RS01295 (11567) | 11567..11797 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| PT299_RS01300 (11781) | 11781..12059 | + | 279 | Protein_18 | protein YdfX | - |
| PT299_RS01305 (12094) | 12094..12243 | + | 150 | WP_011443592.1 | protein YdfW | - |
| PT299_RS01310 (12680) | 12680..13012 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| PT299_RS01315 (13215) | 13215..13520 | - | 306 | WP_001326990.1 | protein YdfV | - |
| PT299_RS01320 (13545) | 13545..13784 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| PT299_RS01325 (13784) | 13784..14071 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| PT299_RS01330 (14143) | 14143..14298 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| PT299_RS01335 (14515) | 14515..14766 | + | 252 | WP_000980994.1 | protein Rem | - |
| PT299_RS01340 (14833) | 14833..15111 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| PT299_RS01345 (15113) | 15113..16162 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| PT299_RS01350 (16176) | 16176..16928 | + | 753 | WP_001047135.1 | antitermination protein | - |
| PT299_RS01355 (17206) | 17206..17295 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| PT299_RS01360 (17350) | 17350..17562 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| PT299_RS01365 (17863) | 17863..18078 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| PT299_RS01370 (18442) | 18442..18612 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| PT299_RS01375 (18832) | 18832..19047 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| PT299_RS01380 (19052) | 19052..19363 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| PT299_RS01385 (19360) | 19360..19893 | + | 534 | WP_001092971.1 | lysozyme | - |
| PT299_RS01390 (19890) | 19890..20387 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| PT299_RS01395 (20750) | 20750..20962 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| PT299_RS01400 (20973) | 20973..21161 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| PT299_RS01405 (21164) | 21164..21229 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| PT299_RS01410 (21635) | 21635..21808 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| PT299_RS01415 (21960) | 21960..22370 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| PT299_RS01420 (22428) | 22428..22661 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| PT299_RS01425 (23050) | 23050..23619 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| PT299_RS01430 (23570) | 23570..24532 | + | 963 | WP_001027733.1 | phage tail protein | - |
| PT299_RS01435 (24532) | 24532..25107 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| PT299_RS01440 (25205) | 25205..25795 | - | 591 | WP_000086525.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| PT299_RS01445 (26112) | 26112..26345 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| PT299_RS01450 (26414) | 26414..26527 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| PT299_RS01455 (27048) | 27048..28415 | + | 1368 | Protein_49 | MHS family MFS transporter | - |
| PT299_RS01460 (28504) | 28504..29964 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| PT299_RS01465 (29999) | 29999..30202 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| PT299_RS01470 (30379) | 30379..31065 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| PT299_RS01475 (31154) | 31154..31900 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| PT299_RS01480 (32037) | 32037..34082 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| PT299_RS01485 (34126) | 34126..34644 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |