MGE detailed information
MGE type: Prophage MGE length: 57094 bp
Accession: NZ_CP117820 Location: 1850640..1907733 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Accession: NZ_CP117820 Location: 1850640..1907733 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT012_RS08415 (PT012_08415) | 1847503..1847922 | + | 420 | WP_004083556.1 | Rnf electron transport complex subunit RnfB | - |
| PT012_RS08420 (PT012_08420) | 1848727..1849395 | - | 669 | WP_004083557.1 | hypothetical protein | - |
| PT012_RS08425 (PT012_08425) | 1849496..1849753 | - | 258 | WP_021358190.1 | hypothetical protein | - |
| PT012_RS08430 (PT012_08430) | 1849746..1849931 | - | 186 | WP_080654454.1 | hypothetical protein | - |
| PT012_RS08435 (PT012_08435) | 1849980..1850177 | - | 198 | WP_225621804.1 | hypothetical protein | - |
| PT012_RS08440 (PT012_08440) | 1850326..1850466 | + | 141 | WP_225621805.1 | hypothetical protein | - |
| PT012_RS08445 (PT012_08445) | 1850577..1850876 | + | 300 | Protein_1647 | terminase family protein | - |
| PT012_RS08450 (PT012_08450) | 1850919..1851245 | + | 327 | WP_128283940.1 | hypothetical protein | - |
| PT012_RS08455 (PT012_08455) | 1851184..1851630 | + | 447 | WP_004083559.1 | hypothetical protein | - |
| PT012_RS08460 (PT012_08460) | 1851881..1852264 | + | 384 | WP_004083560.1 | DNA adenine methylase | - |
| PT012_RS08465 (PT012_08465) | 1852368..1852754 | + | 387 | WP_027700294.1 | DNA adenine methylase | - |
| PT012_RS08470 (PT012_08470) | 1852733..1853296 | - | 564 | WP_235190591.1 | hypothetical protein | - |
| PT012_RS08475 (PT012_08475) | 1853797..1854132 | - | 336 | WP_027700292.1 | hypothetical protein | - |
| PT012_RS08480 (PT012_08480) | 1854699..1855517 | + | 819 | WP_027700598.1 | BglII/BstYI family type II restriction endonuclease | - |
| PT012_RS08485 (PT012_08485) | 1855514..1856206 | + | 693 | WP_027700599.1 | MT-A70 family methyltransferase | - |
| PT012_RS08490 (PT012_08490) | 1856362..1856544 | - | 183 | WP_038284140.1 | hypothetical protein | - |
| PT012_RS08495 (PT012_08495) | 1856898..1857902 | - | 1005 | WP_027700600.1 | peptidase | - |
| PT012_RS08500 (PT012_08500) | 1858407..1859570 | - | 1164 | WP_274169883.1 | phage tail protein | - |
| PT012_RS08505 (PT012_08505) | 1859574..1860134 | - | 561 | WP_027700634.1 | DUF2612 domain-containing protein | - |
| PT012_RS08510 (PT012_08510) | 1860131..1861276 | - | 1146 | WP_027700633.1 | baseplate J/gp47 family protein | - |
| PT012_RS08515 (PT012_08515) | 1861379..1861675 | + | 297 | WP_004085590.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PT012_RS08520 (PT012_08520) | 1861678..1861971 | + | 294 | WP_004085592.1 | putative addiction module antidote protein | Antitoxin Detail |
| PT012_RS08525 (PT012_08525) | 1862027..1862380 | - | 354 | WP_027700632.1 | hypothetical protein | - |
| PT012_RS08530 (PT012_08530) | 1862377..1863018 | - | 642 | WP_012382583.1 | Gp138 family membrane-puncturing spike protein | - |
| PT012_RS08535 (PT012_08535) | 1863015..1863845 | - | 831 | WP_027700631.1 | hypothetical protein | - |
| PT012_RS08540 (PT012_08540) | 1863842..1864159 | - | 318 | WP_012382585.1 | hypothetical protein | - |
| PT012_RS08545 (PT012_08545) | 1864159..1864929 | - | 771 | WP_272819576.1 | hypothetical protein | - |
| PT012_RS08550 (PT012_08550) | 1865282..1865536 | - | 255 | WP_027700683.1 | Blp family class II bacteriocin | - |
| PT012_RS08555 (PT012_08555) | 1865840..1867729 | - | 1890 | WP_274169885.1 | hypothetical protein | - |
| PT012_RS08560 (PT012_08560) | 1867877..1868299 | - | 423 | WP_004085005.1 | putative phage tail assembly chaperone | - |
| PT012_RS08565 (PT012_08565) | 1868296..1868733 | - | 438 | WP_027700644.1 | DUF3277 family protein | - |
| PT012_RS08570 (PT012_08570) | 1868743..1870239 | - | 1497 | WP_027700645.1 | DUF3383 domain-containing protein | - |
| PT012_RS08575 (PT012_08575) | 1870240..1870497 | - | 258 | WP_258057582.1 | hypothetical protein | - |
| PT012_RS08580 (PT012_08580) | 1870698..1871066 | - | 369 | WP_038284187.1 | hypothetical protein | - |
| PT012_RS08585 (PT012_08585) | 1871053..1871373 | - | 321 | WP_230577602.1 | hypothetical protein | - |
| PT012_RS08590 (PT012_08590) | 1871529..1871900 | - | 372 | WP_004085010.1 | DUF4054 domain-containing protein | - |
| PT012_RS08595 (PT012_08595) | 1871903..1872274 | - | 372 | WP_027700648.1 | hypothetical protein | - |
| PT012_RS08600 (PT012_08600) | 1872338..1873321 | - | 984 | WP_038230284.1 | DUF2184 domain-containing protein | - |
| PT012_RS08605 (PT012_08605) | 1873331..1873813 | - | 483 | WP_004090290.1 | hypothetical protein | - |
| PT012_RS08610 (PT012_08610) | 1873823..1875121 | - | 1299 | WP_272819578.1 | DUF2213 domain-containing protein | - |
| PT012_RS08615 (PT012_08615) | 1875031..1875876 | - | 846 | WP_234499700.1 | phage minor head protein | - |
| PT012_RS08620 (PT012_08620) | 1875788..1877221 | - | 1434 | WP_272819579.1 | DUF1073 domain-containing protein | - |
| PT012_RS08625 (PT012_08625) | 1877218..1878768 | - | 1551 | WP_027700655.1 | phage terminase large subunit | - |
| PT012_RS08630 (PT012_08630) | 1878719..1879117 | - | 399 | WP_004086920.1 | hypothetical protein | - |
| PT012_RS08635 (PT012_08635) | 1879209..1879421 | - | 213 | WP_040123254.1 | hypothetical protein | - |
| PT012_RS08640 (PT012_08640) | 1879423..1879884 | - | 462 | WP_140162026.1 | hypothetical protein | - |
| PT012_RS08645 (PT012_08645) | 1879874..1880203 | - | 330 | WP_004085022.1 | phage holin family protein | - |
| PT012_RS08650 (PT012_08650) | 1880196..1880696 | - | 501 | WP_234499714.1 | lysozyme | - |
| PT012_RS08655 (PT012_08655) | 1880862..1881560 | - | 699 | WP_258057571.1 | hypothetical protein | - |
| PT012_RS08660 (PT012_08660) | 1881689..1882099 | - | 411 | WP_038211646.1 | hypothetical protein | - |
| PT012_RS08665 (PT012_08665) | 1882105..1883571 | - | 1467 | WP_027700662.1 | replicative DNA helicase | - |
| PT012_RS08670 (PT012_08670) | 1883568..1884392 | - | 825 | WP_027700661.1 | hypothetical protein | - |
| PT012_RS08675 (PT012_08675) | 1884394..1884654 | - | 261 | WP_248638125.1 | hypothetical protein | - |
| PT012_RS08680 (PT012_08680) | 1884651..1885439 | - | 789 | WP_128723964.1 | Bro-N domain-containing protein | - |
| PT012_RS08685 (PT012_08685) | 1885439..1886035 | - | 597 | WP_272819598.1 | Bro-N domain-containing protein | - |
| PT012_RS08690 (PT012_08690) | 1886293..1886658 | - | 366 | WP_038229950.1 | hypothetical protein | - |
| PT012_RS08695 (PT012_08695) | 1886655..1886870 | - | 216 | WP_230577619.1 | hypothetical protein | - |
| PT012_RS08700 (PT012_08700) | 1886900..1887088 | - | 189 | WP_020851634.1 | hypothetical protein | - |
| PT012_RS08705 (PT012_08705) | 1887149..1887646 | - | 498 | WP_169719191.1 | hypothetical protein | - |
| PT012_RS08710 (PT012_08710) | 1887636..1887881 | - | 246 | WP_027700625.1 | hypothetical protein | - |
| PT012_RS08715 (PT012_08715) | 1887966..1888640 | + | 675 | WP_027700624.1 | helix-turn-helix transcriptional regulator | - |
| PT012_RS08720 (PT012_08720) | 1888691..1889302 | - | 612 | WP_004087040.1 | Fic/DOC family protein | Toxin Detail |
| PT012_RS08725 (PT012_08725) | 1889299..1889487 | - | 189 | WP_004087046.1 | antitoxin VbhA family protein | Antitoxin Detail |
| PT012_RS08730 (PT012_08730) | 1889881..1890336 | + | 456 | WP_027700622.1 | hypothetical protein | - |
| PT012_RS08735 (PT012_08735) | 1890333..1890803 | + | 471 | WP_027700621.1 | DUF1566 domain-containing protein | - |
| PT012_RS08740 (PT012_08740) | 1890800..1891207 | + | 408 | WP_027700620.1 | hypothetical protein | - |
| PT012_RS08745 (PT012_08745) | 1891204..1891395 | + | 192 | WP_004086365.1 | hypothetical protein | - |
| PT012_RS08750 (PT012_08750) | 1891571..1891966 | + | 396 | WP_241557581.1 | hypothetical protein | - |
| PT012_RS08755 (PT012_08755) | 1891935..1892276 | + | 342 | WP_274169890.1 | hypothetical protein | - |
| PT012_RS08760 (PT012_08760) | 1892297..1892641 | + | 345 | WP_027700617.1 | hypothetical protein | - |
| PT012_RS08765 (PT012_08765) | 1892682..1893503 | + | 822 | WP_027700618.1 | DUF2303 family protein | - |
| PT012_RS08770 (PT012_08770) | 1893519..1894439 | + | 921 | WP_027700619.1 | phage recombination protein Bet | - |
| PT012_RS08775 (PT012_08775) | 1894436..1896097 | + | 1662 | WP_272819581.1 | YqaJ viral recombinase family protein | - |
| PT012_RS08780 (PT012_08780) | 1896157..1896894 | + | 738 | WP_211226389.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | VF |
| PT012_RS08785 (PT012_08785) | 1897185..1897979 | + | 795 | WP_234499765.1 | Bro-N domain-containing protein | - |
| PT012_RS08790 (PT012_08790) | 1898046..1898390 | + | 345 | Protein_1716 | single-stranded DNA-binding protein | - |
| PT012_RS08795 (PT012_08795) | 1898476..1898727 | + | 252 | WP_038283952.1 | DUF4224 domain-containing protein | - |
| PT012_RS08800 (PT012_08800) | 1898729..1899706 | + | 978 | WP_080654448.1 | hypothetical protein ; Integrase | Integrase |
| PT012_RS08810 (PT012_08810) | 1899974..1900429 | - | 456 | WP_004083563.1 | hypothetical protein | VF |
| PT012_RS08815 (PT012_08815) | 1900426..1904991 | - | 4566 | WP_027700210.1 | Type IV pilus biogenesis factor PilY1 | VF |
| PT012_RS08820 (PT012_08820) | 1904995..1905489 | - | 495 | WP_012382714.1 | PilX N-terminal domain-containing pilus assembly protein | - |
| PT012_RS08825 (PT012_08825) | 1905489..1906745 | - | 1257 | WP_027700209.1 | PilW family protein | - |
| PT012_RS08830 (PT012_08830) | 1906742..1907224 | - | 483 | WP_004083567.1 | hypothetical protein | VF |
| PT012_RS08835 (PT012_08835) | 1907221..1907733 | - | 513 | WP_027700208.1 | hypothetical protein | VF |
| PT012_RS08840 (PT012_08840) | 1907879..1909273 | - | 1395 | WP_011098185.1 | nucleotide 5'-monophosphate nucleosidase PpnN | - |
| PT012_RS08845 (PT012_08845) | 1909704..1911272 | - | 1569 | WP_027700206.1 | EAL domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|