MGE detailed information
MGE type: Prophage MGE length: 43928 bp
Accession: NZ_CP117820 Location: 1351620..1395547 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Accession: NZ_CP117820 Location: 1351620..1395547 Organism: Xylella fastidiosa strain ICMP 8740 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT012_RS05980 (PT012_05980) | 1347516..1348559 | - | 1044 | WP_004083920.1 | rod shape-determining protein | - |
| PT012_RS05985 (PT012_05985) | 1350251..1350454 | - | 204 | WP_021358596.1 | hypothetical protein | - |
| PT012_RS05990 (PT012_05990) | 1350460..1350642 | - | 183 | WP_021358597.1 | hypothetical protein | - |
| PT012_RS05995 (PT012_05995) | 1350754..1351095 | + | 342 | WP_004084103.1 | helix-turn-helix transcriptional regulator | - |
| PT012_RS06000 (PT012_06000) | 1351373..1351549 | + | 177 | WP_234499908.1 | BrnT family toxin | - |
| PT012_RS06005 (PT012_06005) | 1351620..1351937 | + | 318 | WP_004084245.1 | BrnA antitoxin family protein | - |
| PT012_RS06010 (PT012_06010) | 1352343..1352585 | + | 243 | WP_020851762.1 | hypothetical protein | - |
| PT012_RS06015 (PT012_06015) | 1352680..1352811 | + | 132 | WP_256704532.1 | hypothetical protein | - |
| PT012_RS06020 (PT012_06020) | 1352945..1353244 | + | 300 | WP_004084250.1 | hypothetical protein | - |
| PT012_RS06025 (PT012_06025) | 1353301..1353699 | + | 399 | WP_027700038.1 | hypothetical protein | - |
| PT012_RS06030 (PT012_06030) | 1353956..1354747 | - | 792 | WP_027700039.1 | DNA adenine methylase | - |
| PT012_RS06035 (PT012_06035) | 1354795..1354923 | + | 129 | WP_256704593.1 | hypothetical protein | - |
| PT012_RS06040 (PT012_06040) | 1354983..1355645 | - | 663 | WP_258057525.1 | hypothetical protein | - |
| PT012_RS06045 (PT012_06045) | 1355754..1356173 | - | 420 | WP_004083636.1 | hypothetical protein | - |
| PT012_RS06050 (PT012_06050) | 1356177..1356689 | - | 513 | WP_027700050.1 | hypothetical protein | VF |
| PT012_RS06055 (PT012_06055) | 1356682..1359507 | - | 2826 | WP_272819562.1 | phage tail protein | - |
| PT012_RS06060 (PT012_06060) | 1359497..1359733 | - | 237 | WP_027700652.1 | hypothetical protein | - |
| PT012_RS06065 (PT012_06065) | 1359730..1360158 | - | 429 | WP_004086822.1 | hypothetical protein | - |
| PT012_RS06070 (PT012_06070) | 1360285..1360575 | - | 291 | WP_076613257.1 | hypothetical protein | - |
| PT012_RS06075 (PT012_06075) | 1360692..1361207 | - | 516 | WP_027700653.1 | phage portal protein | - |
| PT012_RS06080 (PT012_06080) | 1361204..1361440 | - | 237 | WP_012337727.1 | hypothetical protein | - |
| PT012_RS06085 (PT012_06085) | 1361517..1362161 | - | 645 | WP_248638120.1 | phage terminase large subunit family protein | - |
| PT012_RS06090 (PT012_06090) | 1362097..1362444 | - | 348 | WP_248638121.1 | CHC2 zinc finger domain-containing protein | - |
| PT012_RS06095 (PT012_06095) | 1362431..1363708 | - | 1278 | WP_234499902.1 | IS607 family transposase ISCARN56 | Transposase |
| PT012_RS06100 (PT012_06100) | 1363702..1364328 | - | 627 | WP_140160998.1 | IS607 family transposase ISCfe1 | Transposase |
| PT012_RS06105 (PT012_06105) | 1364520..1364861 | + | 342 | WP_228762220.1 | hypothetical protein | - |
| PT012_RS06110 (PT012_06110) | 1364858..1365316 | + | 459 | WP_027700592.1 | DUF1566 domain-containing protein | - |
| PT012_RS06115 (PT012_06115) | 1365316..1365765 | + | 450 | WP_027700593.1 | hypothetical protein | - |
| PT012_RS06120 (PT012_06120) | 1365762..1365983 | + | 222 | WP_027700594.1 | hypothetical protein | - |
| PT012_RS06125 (PT012_06125) | 1365980..1366258 | + | 279 | WP_027700595.1 | hypothetical protein | - |
| PT012_RS06130 (PT012_06130) | 1366255..1366521 | + | 267 | WP_027700596.1 | hypothetical protein | - |
| PT012_RS06135 (PT012_06135) | 1366654..1367187 | + | 534 | WP_004086585.1 | pilin | - |
| PT012_RS06140 (PT012_06140) | 1367280..1367873 | + | 594 | WP_027700597.1 | DapH/DapD/GlmU-related protein | - |
| PT012_RS06145 (PT012_06145) | 1367870..1368403 | + | 534 | WP_004083962.1 | hypothetical protein | - |
| PT012_RS06150 (PT012_06150) | 1368403..1368633 | + | 231 | WP_021358635.1 | hypothetical protein | - |
| PT012_RS06155 (PT012_06155) | 1368626..1369096 | + | 471 | WP_076613218.1 | DUF5131 family protein | - |
| PT012_RS06160 (PT012_06160) | 1369080..1369526 | + | 447 | WP_021358633.1 | single-stranded DNA-binding protein | - |
| PT012_RS06165 (PT012_06165) | 1369548..1369820 | + | 273 | WP_004083966.1 | hypothetical protein | - |
| PT012_RS06170 (PT012_06170) | 1369820..1370992 | + | 1173 | WP_004083967.1 | hypothetical protein ; Integrase | Integrase |
| PT012_RS06175 (PT012_06175) | 1371878..1372696 | + | 819 | WP_027700598.1 | BglII/BstYI family type II restriction endonuclease | - |
| PT012_RS06180 (PT012_06180) | 1372693..1373385 | + | 693 | WP_027700599.1 | MT-A70 family methyltransferase | - |
| PT012_RS06185 (PT012_06185) | 1373541..1373723 | - | 183 | WP_038284140.1 | hypothetical protein | - |
| PT012_RS06190 (PT012_06190) | 1374077..1375081 | - | 1005 | WP_027700600.1 | peptidase | - |
| PT012_RS06195 (PT012_06195) | 1375586..1376749 | - | 1164 | WP_274169883.1 | phage tail protein | - |
| PT012_RS06200 (PT012_06200) | 1376753..1377313 | - | 561 | WP_027700634.1 | DUF2612 domain-containing protein | - |
| PT012_RS06205 (PT012_06205) | 1377310..1378455 | - | 1146 | WP_027700633.1 | baseplate J/gp47 family protein | - |
| PT012_RS06210 (PT012_06210) | 1378558..1378854 | + | 297 | WP_004085590.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PT012_RS06215 (PT012_06215) | 1378857..1379150 | + | 294 | WP_004085592.1 | putative addiction module antidote protein | Antitoxin Detail |
| PT012_RS06220 (PT012_06220) | 1379206..1379559 | - | 354 | WP_027700632.1 | hypothetical protein | - |
| PT012_RS06225 (PT012_06225) | 1379556..1380197 | - | 642 | WP_012382583.1 | Gp138 family membrane-puncturing spike protein | - |
| PT012_RS06230 (PT012_06230) | 1380194..1381024 | - | 831 | WP_027700631.1 | hypothetical protein | - |
| PT012_RS06235 (PT012_06235) | 1381021..1381338 | - | 318 | WP_012382585.1 | hypothetical protein | - |
| PT012_RS06240 (PT012_06240) | 1381338..1382108 | - | 771 | WP_274169884.1 | hypothetical protein | - |
| PT012_RS06245 (PT012_06245) | 1382219..1382446 | + | 228 | WP_004091377.1 | DUF6290 family protein | Antitoxin Detail |
| PT012_RS06250 (PT012_06250) | 1382430..1382696 | + | 267 | WP_004087087.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PT012_RS06255 (PT012_06255) | 1382707..1384596 | - | 1890 | WP_274169885.1 | hypothetical protein | - |
| PT012_RS06260 (PT012_06260) | 1384744..1384986 | - | 243 | WP_234499994.1 | putative phage tail assembly chaperone | - |
| PT012_RS06265 (PT012_06265) | 1385004..1385342 | - | 339 | WP_274169886.1 | hypothetical protein | - |
| PT012_RS06270 (PT012_06270) | 1385352..1385834 | - | 483 | WP_004090290.1 | hypothetical protein | - |
| PT012_RS06275 (PT012_06275) | 1385844..1387142 | - | 1299 | WP_272819578.1 | DUF2213 domain-containing protein | - |
| PT012_RS06280 (PT012_06280) | 1387052..1387897 | - | 846 | WP_274169887.1 | phage minor head protein | - |
| PT012_RS06285 (PT012_06285) | 1387970..1388308 | + | 339 | WP_128723885.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PT012_RS06290 (PT012_06290) | 1388305..1388586 | + | 282 | WP_004085017.1 | helix-turn-helix domain-containing protein | - |
| PT012_RS06295 (PT012_06295) | 1388635..1390023 | - | 1389 | WP_274169888.1 | DUF1073 domain-containing protein | - |
| PT012_RS06300 (PT012_06300) | 1390020..1391570 | - | 1551 | WP_027700655.1 | phage terminase large subunit | - |
| PT012_RS06305 (PT012_06305) | 1391521..1391919 | - | 399 | WP_004086920.1 | hypothetical protein | - |
| PT012_RS06310 (PT012_06310) | 1392011..1392223 | - | 213 | WP_040123254.1 | hypothetical protein | - |
| PT012_RS06315 (PT012_06315) | 1392225..1392686 | - | 462 | WP_140162026.1 | hypothetical protein | - |
| PT012_RS06320 (PT012_06320) | 1392676..1393005 | - | 330 | WP_004085022.1 | phage holin family protein | - |
| PT012_RS06325 (PT012_06325) | 1392998..1393498 | - | 501 | WP_234499714.1 | lysozyme | - |
| PT012_RS06330 (PT012_06330) | 1393598..1394329 | - | 732 | WP_234499874.1 | site-specific DNA-methyltransferase | - |
| PT012_RS06335 (PT012_06335) | 1394418..1395116 | - | 699 | WP_258057571.1 | hypothetical protein | - |
| PT012_RS06340 (PT012_06340) | 1395245..1395655 | - | 411 | WP_140161920.1 | hypothetical protein | - |
| PT012_RS06345 (PT012_06345) | 1396020..1397885 | + | 1866 | WP_027700577.1 | excinuclease ABC subunit UvrC | - |
| PT012_RS06350 (PT012_06350) | 1397882..1398517 | + | 636 | WP_004085711.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| PT012_RS06360 (PT012_06360) | 1399267..1399725 | - | 459 | WP_004085709.1 | hypothetical protein | - |
| PT012_RS06365 (PT012_06365) | 1399933..1400430 | - | 498 | WP_004085707.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|