MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 92454 bp
Accession: NZ_CP117471 Location: 2213016..2305469 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Accession: NZ_CP117471 Location: 2213016..2305469 Organism: Sphingobium sp. YC-XJ3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO876_RS10740 (PO876_10740) | 2208044..2208778 | - | 735 | WP_044660215.1 | methyltransferase domain-containing protein | - |
| PO876_RS10745 (PO876_10745) | 2208778..2209905 | - | 1128 | WP_044660216.1 | peptide chain release factor 2 | - |
| PO876_RS10750 (PO876_10750) | 2210088..2210981 | - | 894 | WP_044660217.1 | N-formylglutamate amidohydrolase | - |
| PO876_RS10755 (PO876_10755) | 2211131..2211508 | + | 378 | WP_025551641.1 | response regulator | - |
| PO876_RS10760 (PO876_10760) | 2211505..2212839 | - | 1335 | WP_044660218.1 | dicarboxylate/amino acid:cation symporter | - |
| PO876_RS10770 (PO876_10770) | 2213331..2213573 | - | 243 | WP_065846227.1 | hypothetical protein | - |
| PO876_RS10775 (PO876_10775) | 2213575..2214612 | + | 1038 | WP_013041065.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS10780 (PO876_10780) | 2214762..2214959 | + | 198 | WP_013041066.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PO876_RS10785 (PO876_10785) | 2214956..2215327 | + | 372 | WP_013041067.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PO876_RS10790 (PO876_10790) | 2215732..2217240 | - | 1509 | WP_274053730.1 | HipA domain-containing protein | - |
| PO876_RS10795 (PO876_10795) | 2217430..2217702 | + | 273 | WP_249902386.1 | hypothetical protein | - |
| PO876_RS10800 (PO876_10800) | 2217713..2217865 | - | 153 | WP_139111437.1 | IS110 family transposase | - |
| PO876_RS10805 (PO876_10805) | 2218198..2218440 | + | 243 | WP_013041071.1 | hypothetical protein ; Integrase | Integrase |
| PO876_RS10810 (PO876_10810) | 2218639..2219076 | - | 438 | WP_274053734.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| PO876_RS10815 (PO876_10815) | 2219207..2219842 | + | 636 | WP_274053736.1 | IS91 family transposase ISAzo26 | Transposase |
| PO876_RS10820 (PO876_10820) | 2220059..2221093 | - | 1035 | WP_013041075.1 | IS110 family transposase ISMmg1 | Transposase |
| PO876_RS10825 (PO876_10825) | 2221174..2222370 | - | 1197 | WP_274049552.1 | IS256 family transposase ISGdi8 | Transposase |
| PO876_RS10830 (PO876_10830) | 2222571..2222822 | + | 252 | WP_148225565.1 | hypothetical protein | - |
| PO876_RS10835 (PO876_10835) | 2222834..2223946 | + | 1113 | WP_013041078.1 | Fic family protein | - |
| PO876_RS10840 (PO876_10840) | 2224209..2224808 | + | 600 | WP_013041079.1 | HAD family hydrolase | - |
| PO876_RS10845 (PO876_10845) | 2224834..2225139 | - | 306 | WP_013041080.1 | type II toxin-antitoxin system VapC family toxin | - |
| PO876_RS10850 (PO876_10850) | 2225303..2225479 | + | 177 | Protein_2131 | IS21 family transposase | - |
| PO876_RS10855 (PO876_10855) | 2225479..2225710 | + | 232 | Protein_2132 | IS21 family transposase | - |
| PO876_RS10860 (PO876_10860) | 2225672..2225968 | - | 297 | WP_148225567.1 | hypothetical protein | - |
| PO876_RS10865 (PO876_10865) | 2226133..2227152 | + | 1020 | WP_013041083.1 | putative glycosyltransferase | VF |
| PO876_RS10870 (PO876_10870) | 2227145..2227834 | + | 690 | WP_013041084.1 | class I SAM-dependent methyltransferase | - |
| PO876_RS10875 (PO876_10875) | 2227851..2229773 | + | 1923 | WP_013041085.1 | GtrA family protein | - |
| PO876_RS10880 (PO876_10880) | 2229770..2231329 | + | 1560 | WP_161601888.1 | glycosyltransferase family 39 protein | - |
| PO876_RS10885 (PO876_10885) | 2231507..2231734 | - | 228 | WP_013041087.1 | DUF2274 domain-containing protein | - |
| PO876_RS10890 (PO876_10890) | 2231744..2233006 | - | 1263 | WP_013041088.1 | hypothetical protein | VF |
| PO876_RS10895 (PO876_10895) | 2233003..2233860 | - | 858 | WP_013041089.1 | P-type conjugative transfer protein TrbG | - |
| PO876_RS10900 (PO876_10900) | 2233857..2234633 | - | 777 | WP_274053747.1 | conjugal transfer protein TrbF | - |
| PO876_RS10905 (PO876_10905) | 2234635..2235930 | - | 1296 | WP_013041091.1 | P-type conjugative transfer protein TrbL | - |
| PO876_RS10910 (PO876_10910) | 2236056..2236805 | - | 750 | WP_013041092.1 | P-type conjugative transfer protein TrbJ | - |
| PO876_RS10915 (PO876_10915) | 2236807..2239257 | - | 2451 | WP_013041093.1 | conjugal transfer protein TrbE | - |
| PO876_RS10920 (PO876_10920) | 2239251..2239511 | - | 261 | WP_013041094.1 | VirB3 family type IV secretion system protein | - |
| PO876_RS10925 (PO876_10925) | 2239508..2239855 | - | 348 | WP_197532066.1 | TrbC/VirB2 family protein | - |
| PO876_RS10930 (PO876_10930) | 2239852..2240808 | - | 957 | WP_049775175.1 | hypothetical protein | VF |
| PO876_RS10935 (PO876_10935) | 2240871..2241287 | - | 417 | WP_013041097.1 | IS3 family transposase ISVa4 | Transposase |
| PO876_RS10940 (PO876_10940) | 2241284..2243305 | - | 2022 | WP_013041098.1 | Conjugal transfer protein TraG | VF |
| PO876_RS10945 (PO876_10945) | 2243451..2244371 | - | 921 | WP_041386066.1 | HEPN domain-containing protein | - |
| PO876_RS10950 (PO876_10950) | 2244654..2244821 | + | 168 | WP_274053762.1 | hypothetical protein | - |
| PO876_RS10955 (PO876_10955) | 2244947..2246959 | - | 2013 | WP_013041101.1 | relaxase/mobilization nuclease RlxS | - |
| PO876_RS10960 (PO876_10960) | 2247339..2247485 | - | 147 | WP_167532622.1 | hypothetical protein | - |
| PO876_RS10965 (PO876_10965) | 2247758..2248446 | - | 689 | Protein_2154 | hypothetical protein | VF |
| PO876_RS10970 (PO876_10970) | 2248540..2249190 | - | 651 | WP_013041105.1 | lytic transglycosylase domain-containing protein | - |
| PO876_RS10975 (PO876_10975) | 2249178..2249750 | - | 573 | WP_013041106.1 | signal peptidase I | - |
| PO876_RS10980 (PO876_10980) | 2249747..2250004 | - | 258 | WP_013041107.1 | helix-turn-helix domain-containing protein | - |
| PO876_RS10985 (PO876_10985) | 2250180..2250500 | - | 321 | WP_013041108.1 | DUF736 domain-containing protein | - |
| PO876_RS10990 (PO876_10990) | 2251374..2251709 | - | 336 | WP_013041111.1 | endoribonuclease MazF | Toxin Detail |
| PO876_RS10995 (PO876_10995) | 2251709..2251951 | - | 243 | WP_013041112.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| PO876_RS11000 (PO876_11000) | 2252076..2252285 | - | 210 | WP_013041113.1 | hypothetical protein | - |
| PO876_RS11005 (PO876_11005) | 2252466..2253506 | - | 1041 | WP_274053773.1 | chromosome partitioning protein ParB | - |
| PO876_RS11010 (PO876_11010) | 2253561..2253791 | + | 231 | WP_274053775.1 | hypothetical protein | - |
| PO876_RS11015 (PO876_11015) | 2253800..2254804 | - | 1005 | WP_274053778.1 | Tyrosine recombinase XerC | VF |
| PO876_RS11020 (PO876_11020) | 2254801..2255712 | - | 912 | WP_274053780.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS11025 (PO876_11025) | 2255706..2257232 | - | 1527 | WP_274053782.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS11030 (PO876_11030) | 2257309..2258070 | - | 762 | WP_274053784.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| PO876_RS11035 (PO876_11035) | 2258533..2259159 | - | 627 | WP_274053786.1 | DUF2285 domain-containing protein | - |
| PO876_RS11040 (PO876_11040) | 2259559..2260326 | + | 768 | WP_253720660.1 | LuxR family transcriptional regulator | - |
| PO876_RS11045 (PO876_11045) | 2260383..2260982 | + | 600 | WP_013041121.1 | acyl-homoserine-lactone synthase | - |
| PO876_RS11050 (PO876_11050) | 2260999..2261865 | + | 867 | WP_041386071.1 | phytanoyl-CoA dioxygenase family protein | - |
| PO876_RS11055 (PO876_11055) | 2261872..2262477 | + | 606 | WP_081440666.1 | GntR family transcriptional regulator | - |
| PO876_RS11060 (PO876_11060) | 2262643..2262762 | + | 120 | WP_126516753.1 | benenodin family lasso peptide | - |
| PO876_RS11065 (PO876_11065) | 2262816..2263472 | + | 657 | WP_013041124.1 | lasso peptide biosynthesis B2 protein | - |
| PO876_RS11070 (PO876_11070) | 2263472..2265223 | + | 1752 | WP_013041125.1 | asparagine synthetase B family protein | - |
| PO876_RS11075 (PO876_11075) | 2265220..2267325 | - | 2106 | WP_148225569.1 | Atxe2 family lasso peptide isopeptidase | - |
| PO876_RS11080 (PO876_11080) | 2267331..2269901 | - | 2571 | WP_013041127.1 | Vitamin B12 transporter BtuB | VF |
| PO876_RS11085 (PO876_11085) | 2269979..2270986 | - | 1008 | WP_013041128.1 | FecR domain-containing protein | - |
| PO876_RS11090 (PO876_11090) | 2270979..2271560 | - | 582 | WP_013041129.1 | sigma-70 family RNA polymerase sigma factor | - |
| PO876_RS11095 (PO876_11095) | 2272632..2273774 | + | 1143 | WP_253720661.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PO876_RS11100 (PO876_11100) | 2273837..2274700 | - | 864 | WP_013041133.1 | class I mannose-6-phosphate isomerase | - |
| PO876_RS11105 (PO876_11105) | 2275061..2276143 | + | 1083 | WP_041386589.1 | Alginate biosynthesis protein AlgA | VF |
| PO876_RS11110 (PO876_11110) | 2276173..2277666 | + | 1494 | WP_013041135.1 | Phosphoglucosamine mutase | VF |
| PO876_RS11115 (PO876_11115) | 2277681..2278922 | - | 1242 | WP_013041136.1 | glycosyltransferase family 1 protein | - |
| PO876_RS11120 (PO876_11120) | 2278955..2279890 | - | 936 | WP_274053810.1 | hypothetical protein | VF |
| PO876_RS11125 (PO876_11125) | 2279936..2280058 | + | 123 | WP_274053813.1 | hypothetical protein | VF |
| PO876_RS11130 (PO876_11130) | 2280063..2280212 | + | 150 | WP_274053817.1 | hypothetical protein | - |
| PO876_RS11135 (PO876_11135) | 2280205..2280342 | + | 138 | WP_013041138.1 | hypothetical protein | - |
| PO876_RS11140 (PO876_11140) | 2280431..2281621 | + | 1191 | WP_013041139.1 | hypothetical protein | VF |
| PO876_RS11145 (PO876_11145) | 2281629..2282429 | + | 801 | WP_013041140.1 | Polysialic acid transport protein KpsM | VF |
| PO876_RS11150 (PO876_11150) | 2282426..2283085 | + | 660 | WP_081440667.1 | Polysialic acid transport ATP-binding protein KpsT | VF |
| PO876_RS11155 (PO876_11155) | 2283088..2283224 | - | 137 | Protein_2192 | IS5 family transposase ISSsp126 | Transposase |
| PO876_RS11160 (PO876_11160) | 2283401..2285788 | + | 2388 | WP_081440668.1 | FkbM family methyltransferase | - |
| PO876_RS11165 (PO876_11165) | 2285796..2286440 | + | 645 | WP_049775112.1 | acetyltransferase | - |
| PO876_RS11170 (PO876_11170) | 2286491..2287474 | + | 984 | WP_197532068.1 | glycosyltransferase family 4 protein | - |
| PO876_RS11175 (PO876_11175) | 2287471..2288514 | + | 1044 | WP_013041146.1 | glycosyltransferase family 4 protein | - |
| PO876_RS11180 (PO876_11180) | 2288514..2289815 | + | 1302 | WP_013041147.1 | glycosyltransferase family 4 protein | - |
| PO876_RS11185 (PO876_11185) | 2289820..2290875 | + | 1056 | WP_274053827.1 | GDP-perosamine synthase | VF |
| PO876_RS11190 (PO876_11190) | 2290866..2291699 | - | 834 | WP_099185567.1 | IS5 family transposase ISGdi1 | Transposase |
| PO876_RS11195 (PO876_11195) | 2291741..2291899 | + | 159 | WP_274053829.1 | hypothetical protein | VF |
| PO876_RS11200 (PO876_11200) | 2291920..2292954 | + | 1035 | WP_274053832.1 | GDP-mannose 4,6-dehydratase | VF |
| PO876_RS11205 (PO876_11205) | 2293047..2293946 | + | 900 | WP_013041150.1 | GDP-mannose 4,6-dehydratase | - |
| PO876_RS11210 (PO876_11210) | 2294192..2295010 | + | 819 | WP_081440669.1 | sulfotransferase family 2 domain-containing protein | - |
| PO876_RS11215 (PO876_11215) | 2295194..2295358 | - | 165 | Protein_2204 | IS3 family transposase | - |
| PO876_RS11220 (PO876_11220) | 2295433..2295816 | + | 384 | Protein_2205 | IS5 family transposase ISSsp126 | Transposase |
| PO876_RS11225 (PO876_11225) | 2296075..2297538 | + | 1464 | WP_274054213.1 | IS21 family transposase ISAli13 | Transposase |
| PO876_RS11230 (PO876_11230) | 2297538..2298347 | + | 810 | WP_274049592.1 | IS21 family transposase ISAli13 | Transposase |
| PO876_RS11235 (PO876_11235) | 2298610..2299305 | + | 696 | Protein_2208 | IS5 family transposase ISSsp126 | Transposase |
| PO876_RS11240 (PO876_11240) | 2299485..2301218 | - | 1734 | WP_013041156.1 | glycosyltransferase family 1 protein | - |
| PO876_RS11245 (PO876_11245) | 2301215..2302336 | - | 1122 | WP_148225571.1 | glycosyltransferase | - |
| PO876_RS11250 (PO876_11250) | 2302457..2302873 | - | 417 | WP_081440671.1 | DUF4214 domain-containing protein | - |
| PO876_RS11255 (PO876_11255) | 2303301..2303687 | - | 387 | Protein_2212 | IS256 family transposase ISNha9 | Transposase |
| PO876_RS11260 (PO876_11260) | 2303745..2303987 | - | 243 | Protein_2213 | IS256 family transposase ISSpwi2 | Transposase |
| PO876_RS11265 (PO876_11265) | 2304175..2304312 | - | 138 | Protein_2214 | IS5/IS1182 family transposase | - |
| PO876_RS11270 (PO876_11270) | 2304388..2304561 | + | 174 | WP_013041162.1 | hypothetical protein | - |
| PO876_RS11275 (PO876_11275) | 2304694..2304837 | - | 144 | WP_013041163.1 | hypothetical protein | - |
| PO876_RS11280 (PO876_11280) | 2305138..2305446 | - | 309 | WP_274053841.1 | hypothetical protein | - |
| PO876_RS11285 (PO876_11285) | 2305470..2307800 | - | 2331 | WP_065846368.1 | GH92 family glycosyl hydrolase | - |
| PO876_RS11290 (PO876_11290) | 2308041..2308946 | + | 906 | WP_044662804.1 | ROK family protein | - |
| PO876_RS11295 (PO876_11295) | 2308939..2309211 | - | 273 | WP_229742347.1 | hypothetical protein | - |
| PO876_RS11300 (PO876_11300) | 2309565..2310383 | + | 819 | WP_044660301.1 | class I mannose-6-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|