MGE detailed information
MGE type: Genomic_island MGE length: 10413 bp
Accession: NZ_CP117388 Location: 990530..1000942 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Accession: NZ_CP117388 Location: 990530..1000942 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM010 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ04_RS04780 (986954) | 986954..987351 | + | 398 | Protein_935 | cytoplasmic protein | - |
| PQQ04_RS04785 (987542) | 987542..987730 | + | 189 | Protein_936 | hypothetical protein | - |
| PQQ04_RS04790 (987938) | 987938..988606 | + | 669 | WP_000445914.1 | hypothetical protein | - |
| PQQ04_RS04795 (988633) | 988633..989127 | + | 495 | WP_000424948.1 | hypothetical protein | - |
| PQQ04_RS04800 (989372) | 989372..990028 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| PQQ04_RS04805 (990261) | 990261..990670 | + | 410 | Protein_940 | IS5/IS1182 family transposase | - |
| PQQ04_RS04810 (990743) | 990743..991270 | - | 528 | WP_000971658.1 | GNAT family N-acetyltransferase | Toxin Detail |
| PQQ04_RS04815 (991267) | 991267..991557 | - | 291 | WP_000855694.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| PQQ04_RS04820 (991827) | 991827..992027 | - | 201 | Protein_943 | IS3 family transposase | - |
| PQQ04_RS04825 (992268) | 992268..992594 | + | 327 | WP_000393305.1 | hypothetical protein | - |
| PQQ04_RS04830 (992867) | 992867..993214 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| PQQ04_RS04835 (993199) | 993199..993648 | - | 450 | WP_000381612.1 | membrane protein | - |
| PQQ04_RS04840 (994080) | 994080..994523 | - | 444 | WP_079798511.1 | Type 3 secretion system pilotin | VF |
| PQQ04_RS04845 (994979) | 994979..995629 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| PQQ04_RS04850 (995626) | 995626..997314 | + | 1689 | WP_000848102.1 | Type 3 secretion system secretin | VF |
| PQQ04_RS04855 (997311) | 997311..998429 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| PQQ04_RS04860 (998454) | 998454..1000511 | + | 2058 | WP_000927220.1 | Invasion protein InvA | VF |
| PQQ04_RS04865 (1000535) | 1000535..1000942 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| PQQ04_RS04870 (1000939) | 1000939..1002233 | + | 1295 | Protein_953 | SctN family type III secretion system ATPase InvC | - |
| PQQ04_RS04875 (1002211) | 1002211..1002654 | + | 444 | WP_000555884.1 | SPI-1 type III secretion system protein SpaM | - |
| PQQ04_RS04880 (1002654) | 1002654..1003664 | + | 1011 | WP_000503111.1 | SPI-1 type III secretion system protein SpaN | - |
| PQQ04_RS04885 (1003664) | 1003664..1004575 | + | 912 | WP_000058741.1 | SPI-1 type III secretion system protein SpaO | - |
| PQQ04_RS04890 (1004565) | 1004565..1005239 | + | 675 | WP_000526014.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| PQQ04_RS04895 (1005265) | 1005265..1005525 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.01 |