MGE detailed information
MGE type: Genomic_island MGE length: 10413 bp
Accession: NZ_CP117384 Location: 990660..1001072 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM013 Replicon: chromosome
Accession: NZ_CP117384 Location: 990660..1001072 Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM013 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP89_RS04780 (987084) | 987084..987481 | + | 398 | Protein_935 | cytoplasmic protein | - |
| PQP89_RS04785 (987672) | 987672..987860 | + | 189 | Protein_936 | hypothetical protein | - |
| PQP89_RS04790 (988068) | 988068..988736 | + | 669 | WP_000445914.1 | hypothetical protein | - |
| PQP89_RS04795 (988763) | 988763..989257 | + | 495 | WP_000424948.1 | hypothetical protein | - |
| PQP89_RS04800 (989502) | 989502..990158 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| PQP89_RS04805 (990391) | 990391..990800 | + | 410 | Protein_940 | IS5/IS1182 family transposase | - |
| PQP89_RS04810 (990873) | 990873..991400 | - | 528 | WP_000971658.1 | GNAT family N-acetyltransferase | Toxin Detail |
| PQP89_RS04815 (991397) | 991397..991687 | - | 291 | WP_000855694.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| PQP89_RS04820 (991957) | 991957..992157 | - | 201 | Protein_943 | IS3 family transposase | - |
| PQP89_RS04825 (992398) | 992398..992724 | + | 327 | WP_000393305.1 | hypothetical protein | - |
| PQP89_RS04830 (992997) | 992997..993344 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| PQP89_RS04835 (993329) | 993329..993778 | - | 450 | WP_000381612.1 | membrane protein | - |
| PQP89_RS04840 (994210) | 994210..994653 | - | 444 | WP_079798511.1 | Type 3 secretion system pilotin | VF |
| PQP89_RS04845 (995109) | 995109..995759 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| PQP89_RS04850 (995756) | 995756..997444 | + | 1689 | WP_000848102.1 | Type 3 secretion system secretin | VF |
| PQP89_RS04855 (997441) | 997441..998559 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| PQP89_RS04860 (998584) | 998584..1000641 | + | 2058 | WP_000927220.1 | Invasion protein InvA | VF |
| PQP89_RS04865 (1000665) | 1000665..1001072 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| PQP89_RS04870 (1001069) | 1001069..1002364 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| PQP89_RS04875 (1002342) | 1002342..1002785 | + | 444 | WP_000555884.1 | SPI-1 type III secretion system protein SpaM | - |
| PQP89_RS04880 (1002785) | 1002785..1003795 | + | 1011 | WP_000503111.1 | SPI-1 type III secretion system protein SpaN | - |
| PQP89_RS04885 (1003795) | 1003795..1004706 | + | 912 | WP_000058741.1 | SPI-1 type III secretion system protein SpaO | - |
| PQP89_RS04890 (1004696) | 1004696..1005370 | + | 675 | WP_000526014.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| PQP89_RS04895 (1005396) | 1005396..1005656 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0.01 |