MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75389 bp
Accession: NZ_CP117375 Location: 1..75389 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: plasmid pRM043_2
Accession: NZ_CP117375 Location: 1..75389 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM043 Replicon: plasmid pRM043_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ08_RS24480 (PQQ08_24480) | 1578..1972 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQQ08_RS24485 (PQQ08_24485) | 2041..2175 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQQ08_RS24490 (PQQ08_24490) | 2330..2527 | - | 198 | WP_001675602.1 | transposase | - |
| PQQ08_RS24495 (PQQ08_24495) | 2822..3424 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQQ08_RS24500 (PQQ08_24500) | 3652..4311 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQQ08_RS24505 (PQQ08_24505) | 5769..6041 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQQ08_RS24510 (PQQ08_24510) | 6277..7074 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQQ08_RS24515 (PQQ08_24515) | 7102..7866 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQQ08_RS24520 (PQQ08_24520) | 7853..8128 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQQ08_RS24525 (PQQ08_24525) | 8128..8841 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQQ08_RS24530 (PQQ08_24530) | 8966..9550 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQQ08_RS24535 (PQQ08_24535) | 9623..9835 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQQ08_RS24540 (PQQ08_24540) | 10096..10257 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQQ08_RS24545 (PQQ08_24545) | 10283..11131 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQQ08_RS24550 (PQQ08_24550) | 11701..12129 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ08_RS24555 (PQQ08_24555) | 12126..12356 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQQ08_RS24560 (PQQ08_24560) | 13101..13319 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ08_RS24565 (PQQ08_24565) | 13321..13626 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ08_RS24570 (PQQ08_24570) | 13628..13918 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ08_RS24575 (PQQ08_24575) | 13915..14436 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ08_RS24580 (PQQ08_24580) | 14471..15253 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ08_RS24585 (PQQ08_24585) | 15262..15945 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ08_RS24590 (PQQ08_24590) | 15999..16487 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ08_RS24595 (PQQ08_24595) | 16481..16817 | + | 337 | Protein_24 | hypothetical protein | - |
| PQQ08_RS24600 (PQQ08_24600) | 17030..17590 | + | 561 | WP_000900095.1 | Invasin | VF |
| PQQ08_RS24605 (PQQ08_24605) | 17657..18016 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ08_RS24610 (PQQ08_24610) | 18073..18498 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ08_RS24615 (PQQ08_24615) | 18625..19275 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ08_RS24620 (PQQ08_24620) | 19536..20261 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ08_RS24625 (PQQ08_24625) | 20540..22321 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ08_RS24630 (PQQ08_24630) | 22373..22540 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ08_RS24635 (PQQ08_24635) | 22503..23270 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQQ08_RS24640 (PQQ08_24640) | 23444..23608 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ08_RS24645 (PQQ08_24645) | 23782..24675 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQQ08_RS24650 (PQQ08_24650) | 25282..26319 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ08_RS24655 (PQQ08_24655) | 26508..27533 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ08_RS24660 (PQQ08_24660) | 27466..29130 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQQ08_RS24665 (PQQ08_24665) | 29114..29674 | - | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| PQQ08_RS24670 (PQQ08_24670) | 29748..30452 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ08_RS24675 (PQQ08_24675) | 30709..31449 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ08_RS24680 (PQQ08_24680) | 32104..32592 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ08_RS24685 (PQQ08_24685) | 32851..33966 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ08_RS24690 (PQQ08_24690) | 34052..34469 | + | 418 | Protein_43 | hypothetical protein | - |
| PQQ08_RS24695 (PQQ08_24695) | 34572..34988 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ08_RS24700 (PQQ08_24700) | 35045..35646 | + | 602 | Protein_45 | DUF2913 family protein | - |
| PQQ08_RS24705 (PQQ08_24705) | 35643..36585 | - | 943 | Protein_46 | ISNCY family transposase ISSen7 | VF |
| PQQ08_RS24710 (PQQ08_24710) | 36978..37598 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQQ08_RS24715 (PQQ08_24715) | 37650..37880 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQQ08_RS24720 (PQQ08_24720) | 38519..38872 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQQ08_RS24725 (PQQ08_24725) | 39009..39455 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQQ08_RS24730 (PQQ08_24730) | 39495..40331 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQQ08_RS24735 (PQQ08_24735) | 41567..41818 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQQ08_RS24740 (PQQ08_24740) | 41808..42089 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ08_RS24745 (PQQ08_24745) | 42235..42558 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQQ08_RS24750 (PQQ08_24750) | 42603..42848 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQQ08_RS24755 (PQQ08_24755) | 42838..43053 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQQ08_RS24760 (PQQ08_24760) | 43146..43475 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQQ08_RS24765 (PQQ08_24765) | 43518..43697 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQQ08_RS24770 (PQQ08_24770) | 43767..43916 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| PQQ08_RS24775 (PQQ08_24775) | 43929..44201 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQQ08_RS24780 (PQQ08_24780) | 44527..45072 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQQ08_RS24785 (PQQ08_24785) | 45075..46256 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQQ08_RS24790 (PQQ08_24790) | 46602..47120 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQQ08_RS24795 (PQQ08_24795) | 47050..47262 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQQ08_RS24800 (PQQ08_24800) | 47295..47942 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQQ08_RS24805 (PQQ08_24805) | 47920..48216 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQQ08_RS24810 (PQQ08_24810) | 48235..50988 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQQ08_RS24815 (PQQ08_24815) | 50999..51757 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQQ08_RS24820 (PQQ08_24820) | 51758..51985 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQQ08_RS24825 (PQQ08_24825) | 51995..53128 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQQ08_RS24830 (PQQ08_24830) | 53255..53383 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQQ08_RS24835 (PQQ08_24835) | 53373..54086 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQQ08_RS24840 (PQQ08_24840) | 54091..55020 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQQ08_RS24845 (PQQ08_24845) | 55017..56222 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQQ08_RS24850 (PQQ08_24850) | 56224..57254 | + | 1031 | Protein_75 | Type IV secretion system protein VirB11 | VF |
| PQQ08_RS24855 (PQQ08_24855) | 57257..59092 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ08_RS24860 (PQQ08_24860) | 59089..59502 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQQ08_RS24865 (PQQ08_24865) | 59499..59801 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQQ08_RS24870 (PQQ08_24870) | 59914..60108 | + | 195 | Protein_79 | ATP-binding protein | - |
| PQQ08_RS24875 (PQQ08_24875) | 60112..60687 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQQ08_RS24880 (PQQ08_24880) | 60692..62845 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQQ08_RS24885 (PQQ08_24885) | 62842..63048 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQQ08_RS24890 (PQQ08_24890) | 63064..63498 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ08_RS24895 (PQQ08_24895) | 64161..64646 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQQ08_RS24900 (PQQ08_24900) | 64805..65932 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQQ08_RS24905 (PQQ08_24905) | 66758..66853 | + | 96 | WP_274891769.1 | DinQ-like type I toxin DqlB | - |
| PQQ08_RS24910 (PQQ08_24910) | 67010..67654 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ08_RS24915 (PQQ08_24915) | 67728..71984 | + | 4257 | Protein_88 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ08_RS24920 (PQQ08_24920) | 72004..72744 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ08_RS24925 (PQQ08_24925) | 72799..73362 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQQ08_RS24930 (PQQ08_24930) | 73479..73760 | + | 282 | Protein_91 | disulfide bond formation protein DsbA | - |
| PQQ08_RS24935 (PQQ08_24935) | 74041..74608 | + | 568 | Protein_92 | phospholipase D family protein | - |
| PQQ08_RS24940 (PQQ08_24940) | 74719..74985 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| PQQ08_RS24945 (PQQ08_24945) | 75233..75310 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|