MGE detailed information
MGE type: Genomic_island MGE length: 11363 bp
Accession: NZ_CP117367 Location: 870910..882272 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: chromosome
Accession: NZ_CP117367 Location: 870910..882272 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM079 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ12_RS04230 (866356) | 866356..867454 | + | 1099 | WP_010989230.1 | peptide chain release factor 2 | - |
| PQQ12_RS04235 (867464) | 867464..868981 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQQ12_RS04240 (869057) | 869057..869602 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ12_RS04245 (869867) | 869867..870625 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| PQQ12_RS04255 (870910) | 870910..871716 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| PQQ12_RS04260 (871996) | 871996..872247 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| PQQ12_RS04265 (872456) | 872456..872683 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ12_RS04270 (872683) | 872683..873081 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ12_RS04275 (873890) | 873890..874426 | + | 537 | WP_001038502.1 | Cysteine--tRNA ligase | VF |
| PQQ12_RS04280 (874473) | 874473..875105 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ12_RS04285 (875824) | 875824..876405 | + | 582 | WP_001244651.1 | hypothetical protein | VF |
| PQQ12_RS04290 (876525) | 876525..879014 | + | 2490 | WP_000705504.1 | hypothetical protein | VF |
| PQQ12_RS04295 (879055) | 879055..879798 | + | 744 | WP_000798504.1 | UDP-2,3-diacylglucosamine hydrolase | VF |
| PQQ12_RS04300 (879795) | 879795..880871 | + | 1077 | WP_000141331.1 | hypothetical protein | - |
| PQQ12_RS04305 (881015) | 881015..881527 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ12_RS04310 (881514) | 881514..882272 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| PQQ12_RS04315 (882482) | 882482..883408 | - | 927 | WP_046338484.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ12_RS04320 (883529) | 883529..883801 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ12_RS04325 (883832) | 883832..885061 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| PQQ12_RS04330 (885203) | 885203..885658 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ12_RS04335 (885762) | 885762..886625 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |