MGE detailed information
MGE type: Prophage MGE length: 41591 bp
Accession: NZ_CP117357 Location: 2102635..2144225 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Accession: NZ_CP117357 Location: 2102635..2144225 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM096 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ15_RS10275 () | 2097693..2098145 | + | 453 | WP_000653693.1 | dihydroneopterin triphosphate diphosphatase | - |
| PQQ15_RS10280 () | 2098175..2098915 | + | 741 | WP_000907242.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| PQQ15_RS10285 () | 2098952..2099473 | + | 522 | WP_000022509.1 | crossover junction endodeoxyribonuclease RuvC | - |
| PQQ15_RS10290 () | 2099475..2100074 | - | 600 | WP_000716748.1 | YebB family permuted papain-like enzyme | - |
| PQQ15_RS10295 () | 2100700..2101595 | - | 896 | Protein_2012 | DUF4034 domain-containing protein | - |
| PQQ15_RS10300 () | 2102015..2102626 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| PQQ15_RS10305 () | 2102635..2103645 | + | 1011 | WP_000568508.1 | Holliday junction ATP-dependent DNA helicase RuvB | VF |
| PQQ15_RS10310 () | 2103724..2104509 | - | 786 | WP_000571508.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| PQQ15_RS10315 () | 2104506..2105261 | - | 756 | WP_000203014.1 | Zinc import ATP-binding protein ZnuC | VF |
| PQQ15_RS10320 () | 2105340..2106284 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| PQQ15_RS10325 () | 2106300..2107619 | + | 1320 | WP_001184028.1 | murein DD-endopeptidase MepM | - |
| PQQ15_RS10330 () | 2107736..2108707 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| PQQ15_RS10335 () | 2108780..2110222 | - | 1443 | WP_274882843.1 | pyruvate kinase | - |
| PQQ15_RS10340 () | 2110346..2111215 | - | 870 | WP_001056720.1 | MurR/RpiR family transcriptional regulator | - |
| PQQ15_RS10345 () | 2111557..2113032 | + | 1476 | WP_000301711.1 | glucose-6-phosphate dehydrogenase | - |
| PQQ15_RS10350 () | 2113267..2115078 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| PQQ15_RS10355 () | 2115116..2115757 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ15_RS10360 () | 2115857..2117035 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ15_RS10365 () | 2117166..2117456 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ15_RS10370 () | 2117524..2117877 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQQ15_RS10375 () | 2117971..2118630 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ15_RS10380 () | 2118843..2120894 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ15_RS10385 () | 2120929..2121627 | - | 699 | WP_274882848.1 | exodeoxyribonuclease X | - |
| PQQ15_RS10390 () | 2121678..2122307 | - | 630 | WP_054175300.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ15_RS10395 () | 2122415..2122645 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ15_RS10400 () | 2122783..2123157 | + | 375 | WP_274882852.1 | CopC domain-containing protein YobA | - |
| PQQ15_RS10405 () | 2123158..2124033 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQQ15_RS10410 () | 2124050..2124403 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2124503..2124648 | - | 146 | - | - | Antitoxin Detail |
| - | 2124543..2124646 | + | 104 | - | - | Toxin Detail |
| PQQ15_RS10415 () | 2124777..2125700 | - | 924 | Protein_2036 | hypothetical protein ; Integrase | Integrase |
| PQQ15_RS10420 () | 2125964..2126425 | - | 462 | Protein_2037 | DNA breaking-rejoining protein | - |
| PQQ15_RS10425 () | 2126414..2126605 | + | 192 | Protein_2038 | glycoside hydrolase family 19 protein | - |
| PQQ15_RS10430 () | 2126659..2127192 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQQ15_RS10435 () | 2127449..2127616 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ15_RS10440 () | 2127681..2127869 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ15_RS10445 () | 2127924..2128184 | + | 261 | Protein_2042 | DUF1441 family protein | - |
| PQQ15_RS10450 () | 2128399..2128743 | + | 345 | Protein_2043 | macro domain-containing protein | - |
| PQQ15_RS10455 () | 2128753..2129223 | + | 471 | Protein_2044 | tail fiber assembly protein | - |
| PQQ15_RS10460 () | 2129320..2129520 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ15_RS10465 () | 2129910..2130090 | - | 181 | Protein_2046 | IS3 family transposase | - |
| PQQ15_RS10470 () | 2130090..2130215 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ15_RS10475 () | 2130729..2130875 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQQ15_RS10480 () | 2130869..2131030 | + | 162 | WP_274882853.1 | helix-turn-helix domain-containing protein | - |
| PQQ15_RS10485 () | 2131362..2131976 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ15_RS10490 () | 2131986..2132144 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ15_RS10495 () | 2132277..2133191 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQQ15_RS10500 () | 2134495..2134917 | - | 423 | Protein_2053 | hypothetical protein ; Integrase | Integrase |
| PQQ15_RS10505 () | 2134987..2136181 | + | 1195 | Protein_2054 | IS256 family transposase IS285 | Transposase |
| PQQ15_RS10510 () | 2136327..2136467 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ15_RS10515 () | 2136633..2136902 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ15_RS10520 () | 2137272..2137691 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQQ15_RS10525 () | 2138079..2138555 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQQ15_RS10530 () | 2138885..2139280 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQQ15_RS10535 () | 2139964..2140686 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ15_RS10540 () | 2140971..2141135 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ15_RS10545 () | 2141359..2142009 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQQ15_RS10550 () | 2142028..2142219 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ15_RS10555 () | 2142330..2142566 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ15_RS10560 () | 2142684..2144123 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ15_RS10565 () | 2144201..2146834 | - | 2634 | WP_001535256.1 | PqiB family protein | - |
| PQQ15_RS10570 () | 2146803..2148086 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ15_RS10575 () | 2148215..2148712 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 | Prophage | TA25947 | NC_016810 | 1910986..1947632 | 0.003 |