MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74850 bp
Accession: NZ_CP117353 Location: 1..74850 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM100 Replicon: plasmid pRM100_2
Accession: NZ_CP117353 Location: 1..74850 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM100 Replicon: plasmid pRM100_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ10_RS24385 (PQQ10_24385) | 1578..1972 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQQ10_RS24390 (PQQ10_24390) | 2041..2175 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQQ10_RS24395 (PQQ10_24395) | 2330..2527 | - | 198 | WP_001675602.1 | transposase | - |
| PQQ10_RS24400 (PQQ10_24400) | 2822..3424 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQQ10_RS24405 (PQQ10_24405) | 3652..4311 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQQ10_RS24410 (PQQ10_24410) | 5769..6041 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQQ10_RS24415 (PQQ10_24415) | 6277..7074 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQQ10_RS24420 (PQQ10_24420) | 7102..7866 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQQ10_RS24425 (PQQ10_24425) | 7853..8128 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQQ10_RS24430 (PQQ10_24430) | 8128..8841 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQQ10_RS24435 (PQQ10_24435) | 8966..9550 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQQ10_RS24440 (PQQ10_24440) | 9623..9835 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQQ10_RS24445 (PQQ10_24445) | 10096..10257 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQQ10_RS24450 (PQQ10_24450) | 10283..11131 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQQ10_RS24455 (PQQ10_24455) | 11701..12129 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ10_RS24460 (PQQ10_24460) | 12126..12356 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQQ10_RS24465 (PQQ10_24465) | 13101..13319 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ10_RS24470 (PQQ10_24470) | 13321..13626 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ10_RS24475 (PQQ10_24475) | 13628..13918 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ10_RS24480 (PQQ10_24480) | 13915..14436 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ10_RS24485 (PQQ10_24485) | 14471..15253 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ10_RS24490 (PQQ10_24490) | 15262..15945 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ10_RS24495 (PQQ10_24495) | 15999..16487 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ10_RS24500 (PQQ10_24500) | 16481..16817 | + | 337 | Protein_24 | hypothetical protein | - |
| PQQ10_RS24505 (PQQ10_24505) | 16727..17149 | + | 423 | WP_274896079.1 | LysM peptidoglycan-binding domain-containing protein | - |
| PQQ10_RS24510 (PQQ10_24510) | 17044..17589 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQQ10_RS24515 (PQQ10_24515) | 17656..18015 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ10_RS24520 (PQQ10_24520) | 18072..18497 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ10_RS24525 (PQQ10_24525) | 18624..19274 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ10_RS24530 (PQQ10_24530) | 19535..20260 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ10_RS24535 (PQQ10_24535) | 20541..22322 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ10_RS24540 (PQQ10_24540) | 22374..22541 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ10_RS24545 (PQQ10_24545) | 22504..23271 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQQ10_RS24550 (PQQ10_24550) | 23445..23609 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ10_RS24555 (PQQ10_24555) | 23783..24676 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQQ10_RS24560 (PQQ10_24560) | 25283..26320 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ10_RS24565 (PQQ10_24565) | 26509..27534 | - | 1026 | WP_274896078.1 | ExeA family protein | - |
| PQQ10_RS24570 (PQQ10_24570) | 27467..28852 | - | 1386 | Protein_38 | IS481 family transposase ISAzs36 | Transposase |
| PQQ10_RS24575 (PQQ10_24575) | 28904..29608 | - | 705 | WP_117051158.1 | IS6 family transposase IS26 | Transposase |
| PQQ10_RS24580 (PQQ10_24580) | 29672..29965 | - | 294 | Protein_40 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQQ10_RS24585 (PQQ10_24585) | 30172..30912 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ10_RS24590 (PQQ10_24590) | 31567..32055 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ10_RS24595 (PQQ10_24595) | 32314..33429 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ10_RS24600 (PQQ10_24600) | 33515..33931 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ10_RS24605 (PQQ10_24605) | 34034..34450 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ10_RS24610 (PQQ10_24610) | 34507..35108 | + | 602 | Protein_46 | DUF2913 family protein | - |
| PQQ10_RS24615 (PQQ10_24615) | 35105..36047 | - | 943 | Protein_47 | ISNCY family transposase ISSen7 | VF |
| PQQ10_RS24620 (PQQ10_24620) | 36440..37059 | + | 620 | Protein_48 | ParA family protein | - |
| PQQ10_RS24625 (PQQ10_24625) | 37111..37341 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQQ10_RS24630 (PQQ10_24630) | 37980..38333 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQQ10_RS24635 (PQQ10_24635) | 38470..38916 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQQ10_RS24640 (PQQ10_24640) | 38956..39792 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQQ10_RS24645 (PQQ10_24645) | 41028..41279 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQQ10_RS24650 (PQQ10_24650) | 41269..41550 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ10_RS24655 (PQQ10_24655) | 41696..42019 | + | 324 | WP_274896077.1 | hypothetical protein | - |
| PQQ10_RS24660 (PQQ10_24660) | 42064..42309 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQQ10_RS24665 (PQQ10_24665) | 42299..42514 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQQ10_RS24670 (PQQ10_24670) | 42607..42936 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQQ10_RS24675 (PQQ10_24675) | 42979..43158 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQQ10_RS24680 (PQQ10_24680) | 43180..43377 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| PQQ10_RS24685 (PQQ10_24685) | 43390..43662 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQQ10_RS24690 (PQQ10_24690) | 43988..44533 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQQ10_RS24695 (PQQ10_24695) | 44536..45717 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQQ10_RS24700 (PQQ10_24700) | 46063..46581 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQQ10_RS24705 (PQQ10_24705) | 46511..46723 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQQ10_RS24710 (PQQ10_24710) | 46756..47403 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQQ10_RS24715 (PQQ10_24715) | 47381..47677 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQQ10_RS24720 (PQQ10_24720) | 47696..50449 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQQ10_RS24725 (PQQ10_24725) | 50460..51218 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQQ10_RS24730 (PQQ10_24730) | 51219..51446 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQQ10_RS24735 (PQQ10_24735) | 51456..52589 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQQ10_RS24740 (PQQ10_24740) | 52716..52844 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQQ10_RS24745 (PQQ10_24745) | 52834..53547 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQQ10_RS24750 (PQQ10_24750) | 53552..54481 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQQ10_RS24755 (PQQ10_24755) | 54478..55683 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQQ10_RS24760 (PQQ10_24760) | 55685..56715 | + | 1031 | Protein_76 | Type IV secretion system protein VirB11 | VF |
| PQQ10_RS24765 (PQQ10_24765) | 56718..58553 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ10_RS24770 (PQQ10_24770) | 58550..58963 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQQ10_RS24775 (PQQ10_24775) | 58960..59262 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQQ10_RS24780 (PQQ10_24780) | 59375..59569 | + | 195 | Protein_80 | ATP-binding protein | - |
| PQQ10_RS24785 (PQQ10_24785) | 59573..60148 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQQ10_RS24790 (PQQ10_24790) | 60153..62306 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQQ10_RS24795 (PQQ10_24795) | 62303..62509 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQQ10_RS24800 (PQQ10_24800) | 62525..62959 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ10_RS24805 (PQQ10_24805) | 63622..64107 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQQ10_RS24810 (PQQ10_24810) | 64266..65393 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQQ10_RS24815 (PQQ10_24815) | 66219..66314 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQQ10_RS24820 (PQQ10_24820) | 66471..67115 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ10_RS24825 (PQQ10_24825) | 67189..71445 | + | 4257 | Protein_89 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ10_RS24830 (PQQ10_24830) | 71465..72205 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ10_RS24835 (PQQ10_24835) | 72260..72823 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQQ10_RS24840 (PQQ10_24840) | 72940..73221 | + | 282 | Protein_92 | disulfide bond formation protein DsbA | - |
| PQQ10_RS24845 (PQQ10_24845) | 73502..74069 | + | 568 | Protein_93 | phospholipase D family protein | - |
| PQQ10_RS24850 (PQQ10_24850) | 74180..74446 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| PQQ10_RS24855 (PQQ10_24855) | 74694..74771 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|