MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 74562 bp
Accession: NZ_CP117345 Location: 1..74562 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM105 Replicon: plasmid pRM105_2
Accession: NZ_CP117345 Location: 1..74562 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM105 Replicon: plasmid pRM105_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQP76_RS24270 (PQP76_24270) | 1..882 | + | 882 | WP_001675606.1 | incFII family plasmid replication initiator RepA | - |
| PQP76_RS24275 (PQP76_24275) | 1677..2071 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQP76_RS24280 (PQP76_24280) | 2140..2274 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQP76_RS24285 (PQP76_24285) | 2429..2626 | - | 198 | WP_001675602.1 | transposase | - |
| PQP76_RS24290 (PQP76_24290) | 2921..3523 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQP76_RS24295 (PQP76_24295) | 3751..4410 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQP76_RS24300 (PQP76_24300) | 5869..6141 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQP76_RS24305 (PQP76_24305) | 6377..7174 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQP76_RS24310 (PQP76_24310) | 7202..7966 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQP76_RS24315 (PQP76_24315) | 7953..8228 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQP76_RS24320 (PQP76_24320) | 8228..8941 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQP76_RS24325 (PQP76_24325) | 9066..9650 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQP76_RS24330 (PQP76_24330) | 9723..9935 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQP76_RS24335 (PQP76_24335) | 10196..10357 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQP76_RS24340 (PQP76_24340) | 10383..11231 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQP76_RS24345 (PQP76_24345) | 11801..12229 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQP76_RS24350 (PQP76_24350) | 12226..12456 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQP76_RS24355 (PQP76_24355) | 13201..13419 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQP76_RS24360 (PQP76_24360) | 13421..13726 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQP76_RS24365 (PQP76_24365) | 13728..14018 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQP76_RS24370 (PQP76_24370) | 14015..14536 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQP76_RS24375 (PQP76_24375) | 14571..15353 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQP76_RS24380 (PQP76_24380) | 15362..16045 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQP76_RS24385 (PQP76_24385) | 16099..16587 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQP76_RS24390 (PQP76_24390) | 16581..16917 | + | 337 | Protein_24 | hypothetical protein | - |
| PQP76_RS24395 (PQP76_24395) | 16908..17249 | + | 342 | Protein_25 | LysM peptidoglycan-binding domain-containing protein | - |
| PQP76_RS24400 (PQP76_24400) | 17144..17689 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQP76_RS24405 (PQP76_24405) | 17756..18115 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP76_RS24410 (PQP76_24410) | 18172..18597 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQP76_RS24415 (PQP76_24415) | 18724..19374 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQP76_RS24420 (PQP76_24420) | 19635..20360 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQP76_RS24425 (PQP76_24425) | 20641..22422 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQP76_RS24430 (PQP76_24430) | 22474..22641 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQP76_RS24435 (PQP76_24435) | 22604..23371 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQP76_RS24440 (PQP76_24440) | 23545..23709 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQP76_RS24445 (PQP76_24445) | 23883..24776 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQP76_RS24450 (PQP76_24450) | 25383..26420 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQP76_RS24455 (PQP76_24455) | 26609..27634 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQP76_RS24460 (PQP76_24460) | 27567..29231 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQP76_RS24465 (PQP76_24465) | 29215..29775 | - | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| PQP76_RS24470 (PQP76_24470) | 29982..30722 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQP76_RS24475 (PQP76_24475) | 31377..31865 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQP76_RS24480 (PQP76_24480) | 32124..33239 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQP76_RS24485 (PQP76_24485) | 33325..33741 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQP76_RS24490 (PQP76_24490) | 33844..34260 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQP76_RS24495 (PQP76_24495) | 34317..34918 | + | 602 | Protein_45 | DUF2913 family protein | - |
| PQP76_RS24500 (PQP76_24500) | 34915..35857 | - | 943 | Protein_46 | ISNCY family transposase ISSen7 | VF |
| PQP76_RS24505 (PQP76_24505) | 36250..36870 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQP76_RS24510 (PQP76_24510) | 36922..37152 | + | 231 | WP_000051066.1 | plasmid partition protein ParG | - |
| PQP76_RS24515 (PQP76_24515) | 37791..38144 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQP76_RS24520 (PQP76_24520) | 38281..38727 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQP76_RS24525 (PQP76_24525) | 38767..39603 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQP76_RS24530 (PQP76_24530) | 40839..41090 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQP76_RS24535 (PQP76_24535) | 41080..41361 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQP76_RS24540 (PQP76_24540) | 41507..41830 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQP76_RS24545 (PQP76_24545) | 41875..42120 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQP76_RS24550 (PQP76_24550) | 42110..42325 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQP76_RS24555 (PQP76_24555) | 42418..42747 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQP76_RS24560 (PQP76_24560) | 42790..42969 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQP76_RS24565 (PQP76_24565) | 42991..43188 | + | 198 | WP_001675595.1 | hypothetical protein | - |
| PQP76_RS24570 (PQP76_24570) | 43201..43473 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQP76_RS24575 (PQP76_24575) | 43799..44344 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQP76_RS24580 (PQP76_24580) | 44347..45528 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQP76_RS24585 (PQP76_24585) | 45874..46392 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQP76_RS24590 (PQP76_24590) | 46322..46534 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQP76_RS24595 (PQP76_24595) | 46567..47214 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQP76_RS24600 (PQP76_24600) | 47192..47488 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQP76_RS24605 (PQP76_24605) | 47507..50260 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQP76_RS24610 (PQP76_24610) | 50271..51029 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQP76_RS24615 (PQP76_24615) | 51030..51257 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQP76_RS24620 (PQP76_24620) | 51267..52400 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQP76_RS24625 (PQP76_24625) | 52527..52655 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQP76_RS24630 (PQP76_24630) | 52645..53358 | + | 714 | WP_000394613.1 | type IV secretion system protein | - |
| PQP76_RS24635 (PQP76_24635) | 53363..54292 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQP76_RS24640 (PQP76_24640) | 54289..55494 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQP76_RS24645 (PQP76_24645) | 55496..56526 | + | 1031 | Protein_75 | Type IV secretion system protein VirB11 | VF |
| PQP76_RS24650 (PQP76_24650) | 56529..58364 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQP76_RS24655 (PQP76_24655) | 58361..58774 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQP76_RS24660 (PQP76_24660) | 58771..59073 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQP76_RS24665 (PQP76_24665) | 59186..59380 | + | 195 | Protein_79 | ATP-binding protein | - |
| PQP76_RS24670 (PQP76_24670) | 59384..59959 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQP76_RS24675 (PQP76_24675) | 59964..62117 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQP76_RS24680 (PQP76_24680) | 62114..62320 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQP76_RS24685 (PQP76_24685) | 62336..62770 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQP76_RS24690 (PQP76_24690) | 63433..63918 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQP76_RS24695 (PQP76_24695) | 64077..65204 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQP76_RS24700 (PQP76_24700) | 66030..66125 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQP76_RS24705 (PQP76_24705) | 66282..66926 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQP76_RS24710 (PQP76_24710) | 67000..71256 | + | 4257 | Protein_88 | Multifunctional conjugation protein TraI | Relaxase |
| PQP76_RS24715 (PQP76_24715) | 71276..72016 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQP76_RS24720 (PQP76_24720) | 72071..72634 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQP76_RS24725 (PQP76_24725) | 72751..73032 | + | 282 | Protein_91 | disulfide bond formation protein DsbA | - |
| PQP76_RS24730 (PQP76_24730) | 73313..73880 | + | 568 | Protein_92 | phospholipase D family protein | - |
| PQP76_RS24735 (PQP76_24735) | 73991..74257 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|