MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 75130 bp
Accession: NZ_CP117342 Location: 1..75130 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: plasmid pRM111_2
Accession: NZ_CP117342 Location: 1..75130 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: plasmid pRM111_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ02_RS24260 (PQQ02_24260) | 1578..1972 | - | 395 | Protein_1 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| PQQ02_RS24265 (PQQ02_24265) | 2041..2175 | - | 135 | Protein_2 | IS66 family transposase ISEc8 | Transposase |
| PQQ02_RS24270 (PQQ02_24270) | 2330..2527 | - | 198 | WP_001675602.1 | transposase | - |
| PQQ02_RS24275 (PQQ02_24275) | 2822..3424 | - | 603 | WP_223151229.1 | hypothetical protein | - |
| PQQ02_RS24280 (PQQ02_24280) | 3652..4311 | - | 660 | WP_001575507.1 | hypothetical protein | - |
| PQQ02_RS24285 (PQQ02_24285) | 5770..6042 | + | 273 | WP_001178538.1 | hypothetical protein | - |
| PQQ02_RS24290 (PQQ02_24290) | 6278..7075 | + | 798 | WP_000704721.1 | hypothetical protein | VF |
| PQQ02_RS24295 (PQQ02_24295) | 7103..7867 | + | 765 | WP_000827659.1 | hypothetical protein | VF |
| PQQ02_RS24300 (PQQ02_24300) | 7854..8129 | + | 276 | WP_001020576.1 | hypothetical protein | - |
| PQQ02_RS24305 (PQQ02_24305) | 8129..8842 | + | 714 | WP_000801115.1 | hypothetical protein | VF |
| PQQ02_RS24310 (PQQ02_24310) | 8967..9551 | + | 585 | WP_001575501.1 | hypothetical protein | - |
| PQQ02_RS24315 (PQQ02_24315) | 9624..9836 | + | 213 | WP_000063794.1 | hypothetical protein | VF |
| PQQ02_RS24320 (PQQ02_24320) | 10097..10258 | + | 162 | WP_001816720.1 | hypothetical protein | - |
| PQQ02_RS24325 (PQQ02_24325) | 10284..11132 | + | 849 | WP_000175391.1 | SdiA-regulated domain-containing protein | - |
| PQQ02_RS24330 (PQQ02_24330) | 11702..12130 | - | 429 | WP_000812999.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ02_RS24335 (PQQ02_24335) | 12127..12357 | - | 231 | WP_001261283.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PQQ02_RS24340 (PQQ02_24340) | 13102..13320 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ02_RS24345 (PQQ02_24345) | 13322..13627 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ02_RS24350 (PQQ02_24350) | 13629..13919 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ02_RS24355 (PQQ02_24355) | 13916..14437 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ02_RS24360 (PQQ02_24360) | 14472..15254 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ02_RS24365 (PQQ02_24365) | 15263..15946 | + | 684 | WP_001751692.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ02_RS24370 (PQQ02_24370) | 16000..16488 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ02_RS24375 (PQQ02_24375) | 16482..16818 | + | 337 | Protein_24 | hypothetical protein | - |
| PQQ02_RS24380 (PQQ02_24380) | 16809..17150 | + | 342 | Protein_25 | LysM peptidoglycan-binding domain-containing protein | - |
| PQQ02_RS24385 (PQQ02_24385) | 17045..17590 | + | 546 | WP_071591236.1 | inverse autotransporter beta domain-containing protein | - |
| PQQ02_RS24390 (PQQ02_24390) | 17657..18016 | - | 360 | WP_001675600.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ02_RS24395 (PQQ02_24395) | 18073..18498 | + | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ02_RS24400 (PQQ02_24400) | 18625..19275 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ02_RS24405 (PQQ02_24405) | 19536..20261 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ02_RS24410 (PQQ02_24410) | 20542..22323 | - | 1782 | WP_001675599.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ02_RS24415 (PQQ02_24415) | 22375..22542 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ02_RS24420 (PQQ02_24420) | 22505..23272 | - | 768 | WP_001575487.1 | virulence protein SpvA | - |
| PQQ02_RS24425 (PQQ02_24425) | 23446..23610 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ02_RS24430 (PQQ02_24430) | 23784..24677 | - | 894 | WP_000346692.1 | virulence genes transcriptional activator SpvR | - |
| PQQ02_RS24435 (PQQ02_24435) | 25284..26321 | + | 1038 | WP_001121398.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ02_RS24440 (PQQ02_24440) | 26510..27535 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ02_RS24445 (PQQ02_24445) | 27468..29117 | - | 1650 | WP_274891644.1 | IS481 family transposase ISAzs36 | Transposase |
| PQQ02_RS24450 (PQQ02_24450) | 29147..29851 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PQQ02_RS24455 (PQQ02_24455) | 29912..30244 | - | 333 | Protein_40 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| PQQ02_RS24460 (PQQ02_24460) | 30451..31191 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ02_RS24465 (PQQ02_24465) | 31846..32334 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ02_RS24470 (PQQ02_24470) | 32593..33708 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ02_RS24475 (PQQ02_24475) | 33794..34210 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ02_RS24480 (PQQ02_24480) | 34313..34729 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ02_RS24485 (PQQ02_24485) | 34786..35387 | + | 602 | Protein_46 | DUF2913 family protein | - |
| PQQ02_RS24490 (PQQ02_24490) | 35384..36326 | - | 943 | Protein_47 | ISNCY family transposase ISSen7 | VF |
| PQQ02_RS24495 (PQQ02_24495) | 36719..37339 | + | 621 | WP_000864788.1 | ParA family protein | - |
| PQQ02_RS24500 (PQQ02_24500) | 37391..37621 | + | 231 | WP_274891643.1 | plasmid partition protein ParG | - |
| PQQ02_RS24505 (PQQ02_24505) | 38260..38613 | - | 354 | WP_001675596.1 | DNA distortion polypeptide 3 | - |
| PQQ02_RS24510 (PQQ02_24510) | 38750..39196 | - | 447 | WP_001074381.1 | hypothetical protein | - |
| PQQ02_RS24515 (PQQ02_24515) | 39236..40072 | - | 837 | WP_001575533.1 | replication initiation protein | - |
| PQQ02_RS24520 (PQQ02_24520) | 41308..41559 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| PQQ02_RS24525 (PQQ02_24525) | 41549..41830 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ02_RS24530 (PQQ02_24530) | 41976..42299 | + | 324 | WP_001181909.1 | hypothetical protein | - |
| PQQ02_RS24535 (PQQ02_24535) | 42344..42589 | + | 246 | WP_000356542.1 | hypothetical protein | - |
| PQQ02_RS24540 (PQQ02_24540) | 42579..42794 | + | 216 | WP_001180117.1 | hypothetical protein | - |
| PQQ02_RS24545 (PQQ02_24545) | 42887..43216 | + | 330 | WP_000866650.1 | hypothetical protein | - |
| PQQ02_RS24550 (PQQ02_24550) | 43259..43438 | + | 180 | WP_001575529.1 | hypothetical protein | - |
| PQQ02_RS24555 (PQQ02_24555) | 43508..43657 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| PQQ02_RS24560 (PQQ02_24560) | 43670..43942 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| PQQ02_RS24565 (PQQ02_24565) | 44268..44813 | + | 546 | WP_000757691.1 | DNA distortion polypeptide 1 | - |
| PQQ02_RS24570 (PQQ02_24570) | 44816..45997 | + | 1182 | WP_000539536.1 | hypothetical protein | Relaxase |
| PQQ02_RS24575 (PQQ02_24575) | 46343..46861 | + | 519 | WP_001675951.1 | transcription termination/antitermination NusG family protein | - |
| PQQ02_RS24580 (PQQ02_24580) | 46791..47003 | + | 213 | WP_000125172.1 | hypothetical protein | - |
| PQQ02_RS24585 (PQQ02_24585) | 47036..47683 | + | 648 | WP_000953526.1 | hypothetical protein | VF |
| PQQ02_RS24590 (PQQ02_24590) | 47661..47957 | + | 297 | WP_000916182.1 | TrbC/VirB2 family protein | - |
| PQQ02_RS24595 (PQQ02_24595) | 47976..50729 | + | 2754 | WP_001675613.1 | Type IV secretion system protein virB4 | VF |
| PQQ02_RS24600 (PQQ02_24600) | 50740..51498 | + | 759 | WP_000744198.1 | type IV secretion system protein | - |
| PQQ02_RS24605 (PQQ02_24605) | 51499..51726 | + | 228 | WP_000835348.1 | EexN family lipoprotein | - |
| PQQ02_RS24610 (PQQ02_24610) | 51736..52869 | + | 1134 | WP_000513456.1 | type IV secretion system protein | - |
| PQQ02_RS24615 (PQQ02_24615) | 52996..53124 | + | 129 | WP_001328099.1 | hypothetical protein | - |
| PQQ02_RS24620 (PQQ02_24620) | 53114..53827 | + | 714 | WP_274891642.1 | type IV secretion system protein | - |
| PQQ02_RS24625 (PQQ02_24625) | 53832..54761 | + | 930 | WP_000783377.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| PQQ02_RS24630 (PQQ02_24630) | 54758..55963 | + | 1206 | WP_000139139.1 | hypothetical protein | VF |
| PQQ02_RS24635 (PQQ02_24635) | 55965..56995 | + | 1031 | Protein_76 | Type IV secretion system protein VirB11 | VF |
| PQQ02_RS24640 (PQQ02_24640) | 56998..58833 | + | 1836 | WP_000053823.1 | type IV secretory system conjugative DNA transfer family protein | - |
| PQQ02_RS24645 (PQQ02_24645) | 58830..59243 | + | 414 | WP_001575522.1 | cag pathogenicity island Cag12 family protein | - |
| PQQ02_RS24650 (PQQ02_24650) | 59240..59542 | + | 303 | WP_015059377.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| PQQ02_RS24655 (PQQ02_24655) | 59655..59849 | + | 195 | Protein_80 | ATP-binding protein | - |
| PQQ02_RS24660 (PQQ02_24660) | 59853..60428 | + | 576 | WP_001198970.1 | hypothetical protein | - |
| PQQ02_RS24665 (PQQ02_24665) | 60433..62586 | + | 2154 | WP_001235753.1 | type IA DNA topoisomerase | - |
| PQQ02_RS24670 (PQQ02_24670) | 62583..62789 | + | 207 | WP_000850859.1 | hemolysin expression modulator Hha | - |
| PQQ02_RS24675 (PQQ02_24675) | 62805..63239 | + | 435 | WP_001293135.1 | H-NS family nucleoid-associated regulatory protein | - |
| PQQ02_RS24680 (PQQ02_24680) | 63902..64387 | + | 486 | WP_001281416.1 | Abi family protein | - |
| PQQ02_RS24685 (PQQ02_24685) | 64546..65673 | - | 1128 | WP_000156234.1 | hypothetical protein | - |
| PQQ02_RS24690 (PQQ02_24690) | 66499..66594 | + | 96 | WP_000609147.1 | DinQ-like type I toxin DqlB | - |
| PQQ02_RS24695 (PQQ02_24695) | 66751..67395 | - | 645 | WP_000203397.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PQQ02_RS24700 (PQQ02_24700) | 67469..71725 | + | 4257 | Protein_89 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ02_RS24705 (PQQ02_24705) | 71745..72485 | + | 741 | WP_000177628.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ02_RS24710 (PQQ02_24710) | 72540..73103 | + | 564 | WP_000129019.1 | fertility inhibition protein FinO | - |
| PQQ02_RS24715 (PQQ02_24715) | 73220..73501 | + | 282 | Protein_92 | disulfide bond formation protein DsbA | - |
| PQQ02_RS24720 (PQQ02_24720) | 73782..74349 | + | 568 | Protein_93 | phospholipase D family protein | - |
| PQQ02_RS24725 (PQQ02_24725) | 74460..74726 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| PQQ02_RS24730 (PQQ02_24730) | 74974..75051 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|