NZ_CP1173421..75130

MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 75130 bp
Accession: NZ_CP117342        Location: 1..75130         Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111       Replicon: plasmid pRM111_2


Gene structure


The 5 kb flanking regions of this MGE are displayed.

PQQ02_RS24285PQQ02_RS24290PQQ02_RS24295PQQ02_RS24300PQQ02_RS24305PQQ02_RS24310PQQ02_RS24315PQQ02_RS24320PQQ02_RS24325PQQ02_RS24340PQQ02_RS24345PQQ02_RS24350PQQ02_RS24355PQQ02_RS24360PQQ02_RS24365PQQ02_RS24370PQQ02_RS24375PQQ02_RS24380PQQ02_RS24385PQQ02_RS24395PQQ02_RS24435PQQ02_RS24470PQQ02_RS24475PQQ02_RS24480PQQ02_RS24485PQQ02_RS24495PQQ02_RS24500PQQ02_RS24520PQQ02_RS24525PQQ02_RS24530PQQ02_RS24535PQQ02_RS24540PQQ02_RS24545PQQ02_RS24550PQQ02_RS24555PQQ02_RS24560PQQ02_RS24565PQQ02_RS24570PQQ02_RS24575PQQ02_RS24580PQQ02_RS24585PQQ02_RS24590PQQ02_RS24595PQQ02_RS24600PQQ02_RS24605PQQ02_RS24610PQQ02_RS24615PQQ02_RS24620PQQ02_RS24625PQQ02_RS24630PQQ02_RS24635PQQ02_RS24640PQQ02_RS24645PQQ02_RS24650PQQ02_RS24655PQQ02_RS24660PQQ02_RS24665PQQ02_RS24670PQQ02_RS24675PQQ02_RS24680PQQ02_RS24690PQQ02_RS24700PQQ02_RS24705PQQ02_RS24710PQQ02_RS24715PQQ02_RS24720PQQ02_RS24725PQQ02_RS24730PQQ02_RS24260PQQ02_RS24265PQQ02_RS24270PQQ02_RS24275PQQ02_RS24280PQQ02_RS24330PQQ02_RS24335PQQ02_RS24390PQQ02_RS24400PQQ02_RS24405PQQ02_RS24410PQQ02_RS24415PQQ02_RS24420PQQ02_RS24425PQQ02_RS24430PQQ02_RS24440PQQ02_RS24445PQQ02_RS24450PQQ02_RS24455PQQ02_RS24460PQQ02_RS24465PQQ02_RS24490PQQ02_RS24505PQQ02_RS24510PQQ02_RS24515PQQ02_RS24685PQQ02_RS24695
Location: 5770..6042 (273 bp)
Type: Others
Protein ID: WP_001178538.1
Location: 6278..7075 (798 bp)
Type: VF
Protein ID: WP_000704721.1
Location: 7103..7867 (765 bp)
Type: VF
Protein ID: WP_000827659.1
Location: 7854..8129 (276 bp)
Type: Others
Protein ID: WP_001020576.1
Location: 8129..8842 (714 bp)
Type: VF
Protein ID: WP_000801115.1
Location: 8967..9551 (585 bp)
Type: Others
Protein ID: WP_001575501.1
Location: 9624..9836 (213 bp)
Type: VF
Protein ID: WP_000063794.1
Location: 10097..10258 (162 bp)
Type: Others
Protein ID: WP_001816720.1
Location: 10284..11132 (849 bp)
Type: Others
Protein ID: WP_000175391.1
Location: 13102..13320 (219 bp)
Type: Antitoxin
Protein ID: WP_000813641.1
Location: 13322..13627 (306 bp)
Type: Toxin
Protein ID: WP_001159863.1
Location: 13629..13919 (291 bp)
Type: Others
Protein ID: WP_001266176.1
Location: 13916..14437 (522 bp)
Type: Others
Protein ID: WP_000198608.1
Location: 14472..15254 (783 bp)
Type: Others
Protein ID: WP_000082169.1
Location: 15263..15946 (684 bp)
Type: VF
Protein ID: WP_001751692.1
Location: 16000..16488 (489 bp)
Type: Others
Protein ID: WP_001075507.1
Location: 16482..16818 (337 bp)
Type: Others
Protein ID: Protein_24
Location: 16809..17150 (342 bp)
Type: Others
Protein ID: Protein_25
Location: 17045..17590 (546 bp)
Type: Others
Protein ID: WP_071591236.1
Location: 18073..18498 (426 bp)
Type: Transposase
Protein ID: WP_000064919.1
Location: 25284..26321 (1038 bp)
Type: Transposase
Protein ID: WP_001121398.1
Location: 32593..33708 (1116 bp)
Type: Others
Protein ID: WP_001247118.1
Location: 33794..34210 (417 bp)
Type: Others
Protein ID: WP_001541564.1
Location: 34313..34729 (417 bp)
Type: Others
Protein ID: WP_000988946.1
Location: 34786..35387 (602 bp)
Type: Others
Protein ID: Protein_46
Location: 36719..37339 (621 bp)
Type: Others
Protein ID: WP_000864788.1
Location: 37391..37621 (231 bp)
Type: Others
Protein ID: WP_274891643.1
Location: 41308..41559 (252 bp)
Type: Antitoxin
Protein ID: WP_000121743.1
Location: 41549..41830 (282 bp)
Type: Toxin
Protein ID: WP_000220560.1
Location: 41976..42299 (324 bp)
Type: Others
Protein ID: WP_001181909.1
Location: 42344..42589 (246 bp)
Type: Others
Protein ID: WP_000356542.1
Location: 42579..42794 (216 bp)
Type: Others
Protein ID: WP_001180117.1
Location: 42887..43216 (330 bp)
Type: Others
Protein ID: WP_000866650.1
Location: 43259..43438 (180 bp)
Type: Others
Protein ID: WP_001575529.1
Location: 43508..43657 (150 bp)
Type: Others
Protein ID: WP_000003880.1
Location: 43670..43942 (273 bp)
Type: Others
Protein ID: WP_000160399.1
Location: 44268..44813 (546 bp)
Type: Others
Protein ID: WP_000757691.1
Location: 44816..45997 (1182 bp)
Type: Relaxase
Protein ID: WP_000539536.1
Location: 46343..46861 (519 bp)
Type: Others
Protein ID: WP_001675951.1
Location: 46791..47003 (213 bp)
Type: Others
Protein ID: WP_000125172.1
Location: 47036..47683 (648 bp)
Type: VF
Protein ID: WP_000953526.1
Location: 47661..47957 (297 bp)
Type: Others
Protein ID: WP_000916182.1
Location: 47976..50729 (2754 bp)
Type: VF
Protein ID: WP_001675613.1
Location: 50740..51498 (759 bp)
Type: Others
Protein ID: WP_000744198.1
Location: 51499..51726 (228 bp)
Type: Others
Protein ID: WP_000835348.1
Location: 51736..52869 (1134 bp)
Type: Others
Protein ID: WP_000513456.1
Location: 52996..53124 (129 bp)
Type: Others
Protein ID: WP_001328099.1
Location: 53114..53827 (714 bp)
Type: Others
Protein ID: WP_274891642.1
Location: 53832..54761 (930 bp)
Type: Others
Protein ID: WP_000783377.1
Location: 54758..55963 (1206 bp)
Type: VF
Protein ID: WP_000139139.1
Location: 55965..56995 (1031 bp)
Type: VF
Protein ID: Protein_76
Location: 56998..58833 (1836 bp)
Type: Others
Protein ID: WP_000053823.1
Location: 58830..59243 (414 bp)
Type: Others
Protein ID: WP_001575522.1
Location: 59240..59542 (303 bp)
Type: Others
Protein ID: WP_015059377.1
Location: 59655..59849 (195 bp)
Type: Others
Protein ID: Protein_80
Location: 59853..60428 (576 bp)
Type: Others
Protein ID: WP_001198970.1
Location: 60433..62586 (2154 bp)
Type: Others
Protein ID: WP_001235753.1
Location: 62583..62789 (207 bp)
Type: Others
Protein ID: WP_000850859.1
Location: 62805..63239 (435 bp)
Type: Others
Protein ID: WP_001293135.1
Location: 63902..64387 (486 bp)
Type: Others
Protein ID: WP_001281416.1
Location: 66499..66594 (96 bp)
Type: Others
Protein ID: WP_000609147.1
Location: 67469..71725 (4257 bp)
Type: Relaxase
Protein ID: Protein_89
Location: 71745..72485 (741 bp)
Type: Others
Protein ID: WP_000177628.1
Location: 72540..73103 (564 bp)
Type: Others
Protein ID: WP_000129019.1
Location: 73220..73501 (282 bp)
Type: Others
Protein ID: Protein_92
Location: 73782..74349 (568 bp)
Type: Others
Protein ID: Protein_93
Location: 74460..74726 (267 bp)
Type: Others
Protein ID: WP_001576653.1
Location: 74974..75051 (78 bp)
Type: Others
Protein ID: WP_001541552.1
Location: 1578..1972 (395 bp)
Type: Others
Protein ID: Protein_1
Location: 2041..2175 (135 bp)
Type: Transposase
Protein ID: Protein_2
Location: 2330..2527 (198 bp)
Type: Others
Protein ID: WP_001675602.1
Location: 2822..3424 (603 bp)
Type: Others
Protein ID: WP_223151229.1
Location: 3652..4311 (660 bp)
Type: Others
Protein ID: WP_001575507.1
Location: 11702..12130 (429 bp)
Type: Toxin
Protein ID: WP_000812999.1
Location: 12127..12357 (231 bp)
Type: Antitoxin
Protein ID: WP_001261283.1
Location: 17657..18016 (360 bp)
Type: Transposase
Protein ID: WP_001675600.1
Location: 18625..19275 (651 bp)
Type: Others
Protein ID: WP_001575489.1
Location: 19536..20261 (726 bp)
Type: VF
Protein ID: WP_001122242.1
Location: 20542..22323 (1782 bp)
Type: VF
Protein ID: WP_001675599.1
Location: 22375..22542 (168 bp)
Type: Others
Protein ID: WP_001526987.1
Location: 22505..23272 (768 bp)
Type: Others
Protein ID: WP_001575487.1
Location: 23446..23610 (165 bp)
Type: Others
Protein ID: WP_001576629.1
Location: 23784..24677 (894 bp)
Type: Others
Protein ID: WP_000346692.1
Location: 26510..27535 (1026 bp)
Type: Others
Protein ID: WP_001576625.1
Location: 27468..29117 (1650 bp)
Type: Transposase
Protein ID: WP_274891644.1
Location: 29147..29851 (705 bp)
Type: Transposase
Protein ID: WP_001067855.1
Location: 29912..30244 (333 bp)
Type: Transposase
Protein ID: Protein_40
Location: 30451..31191 (741 bp)
Type: Others
Protein ID: WP_001541566.1
Location: 31846..32334 (489 bp)
Type: Others
Protein ID: WP_001135407.1
Location: 35384..36326 (943 bp)
Type: VF
Protein ID: Protein_47
Location: 38260..38613 (354 bp)
Type: Others
Protein ID: WP_001675596.1
Location: 38750..39196 (447 bp)
Type: Others
Protein ID: WP_001074381.1
Location: 39236..40072 (837 bp)
Type: Others
Protein ID: WP_001575533.1
Location: 64546..65673 (1128 bp)
Type: Others
Protein ID: WP_000156234.1
Location: 66751..67395 (645 bp)
Type: Transposase
Protein ID: WP_000203397.1
ToxinAntibiotic ResistanceTransposaseIntegraseOthersAntitoxinVirulence FactorRelaxaseoriT
Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQQ02_RS24260 (PQQ02_24260) 1578..1972 - 395 Protein_1 IS66 family transposase zinc-finger binding domain-containing protein -
PQQ02_RS24265 (PQQ02_24265) 2041..2175 - 135 Protein_2 IS66 family transposase ISEc8 Transposase
PQQ02_RS24270 (PQQ02_24270) 2330..2527 - 198 WP_001675602.1 transposase -
PQQ02_RS24275 (PQQ02_24275) 2822..3424 - 603 WP_223151229.1 hypothetical protein -
PQQ02_RS24280 (PQQ02_24280) 3652..4311 - 660 WP_001575507.1 hypothetical protein -
PQQ02_RS24285 (PQQ02_24285) 5770..6042 + 273 WP_001178538.1 hypothetical protein -
PQQ02_RS24290 (PQQ02_24290) 6278..7075 + 798 WP_000704721.1 hypothetical protein VF
PQQ02_RS24295 (PQQ02_24295) 7103..7867 + 765 WP_000827659.1 hypothetical protein VF
PQQ02_RS24300 (PQQ02_24300) 7854..8129 + 276 WP_001020576.1 hypothetical protein -
PQQ02_RS24305 (PQQ02_24305) 8129..8842 + 714 WP_000801115.1 hypothetical protein VF
PQQ02_RS24310 (PQQ02_24310) 8967..9551 + 585 WP_001575501.1 hypothetical protein -
PQQ02_RS24315 (PQQ02_24315) 9624..9836 + 213 WP_000063794.1 hypothetical protein VF
PQQ02_RS24320 (PQQ02_24320) 10097..10258 + 162 WP_001816720.1 hypothetical protein -
PQQ02_RS24325 (PQQ02_24325) 10284..11132 + 849 WP_000175391.1 SdiA-regulated domain-containing protein -
PQQ02_RS24330 (PQQ02_24330) 11702..12130 - 429 WP_000812999.1 type II toxin-antitoxin system VapC family toxin Toxin Detail
PQQ02_RS24335 (PQQ02_24335) 12127..12357 - 231 WP_001261283.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin Detail
PQQ02_RS24340 (PQQ02_24340) 13102..13320 + 219 WP_000813641.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin Detail
PQQ02_RS24345 (PQQ02_24345) 13322..13627 + 306 WP_001159863.1 type II toxin-antitoxin system toxin CcdB Toxin Detail
PQQ02_RS24350 (PQQ02_24350) 13629..13919 + 291 WP_001266176.1 hypothetical protein -
PQQ02_RS24355 (PQQ02_24355) 13916..14437 + 522 WP_000198608.1 hypothetical protein -
PQQ02_RS24360 (PQQ02_24360) 14472..15254 + 783 WP_000082169.1 site-specific integrase -
PQQ02_RS24365 (PQQ02_24365) 15263..15946 + 684 WP_001751692.1 Cyclic di-GMP phosphodiesterase PdeL VF
PQQ02_RS24370 (PQQ02_24370) 16000..16488 + 489 WP_001075507.1 CaiF/GrlA family transcriptional regulator -
PQQ02_RS24375 (PQQ02_24375) 16482..16818 + 337 Protein_24 hypothetical protein -
PQQ02_RS24380 (PQQ02_24380) 16809..17150 + 342 Protein_25 LysM peptidoglycan-binding domain-containing protein -
PQQ02_RS24385 (PQQ02_24385) 17045..17590 + 546 WP_071591236.1 inverse autotransporter beta domain-containing protein -
PQQ02_RS24390 (PQQ02_24390) 17657..18016 - 360 WP_001675600.1 IS200-IS605 family transposase ISEc46 Transposase
PQQ02_RS24395 (PQQ02_24395) 18073..18498 + 426 WP_000064919.1 IS200-IS605 family transposase ISEc46 Transposase
PQQ02_RS24400 (PQQ02_24400) 18625..19275 - 651 WP_001575489.1 SPI-2 type III secretion system effector cysteine hydrolase SpvD -
PQQ02_RS24405 (PQQ02_24405) 19536..20261 - 726 WP_001122242.1 MAPK phosphothreonine lyase VF
PQQ02_RS24410 (PQQ02_24410) 20542..22323 - 1782 WP_001675599.1 Mono(ADP-ribosyl)transferase SpvB VF
PQQ02_RS24415 (PQQ02_24415) 22375..22542 - 168 WP_001526987.1 hypothetical protein -
PQQ02_RS24420 (PQQ02_24420) 22505..23272 - 768 WP_001575487.1 virulence protein SpvA -
PQQ02_RS24425 (PQQ02_24425) 23446..23610 - 165 WP_001576629.1 glycoside hydrolase family protein -
PQQ02_RS24430 (PQQ02_24430) 23784..24677 - 894 WP_000346692.1 virulence genes transcriptional activator SpvR -
PQQ02_RS24435 (PQQ02_24435) 25284..26321 + 1038 WP_001121398.1 IS630 family transposase ISEc33 Transposase
PQQ02_RS24440 (PQQ02_24440) 26510..27535 - 1026 WP_001576625.1 ExeA family protein -
PQQ02_RS24445 (PQQ02_24445) 27468..29117 - 1650 WP_274891644.1 IS481 family transposase ISAzs36 Transposase
PQQ02_RS24450 (PQQ02_24450) 29147..29851 - 705 WP_001067855.1 IS6 family transposase IS26 Transposase
PQQ02_RS24455 (PQQ02_24455) 29912..30244 - 333 Protein_40 Tn3 family transposase TnpR_ISPa38 Transposase
PQQ02_RS24460 (PQQ02_24460) 30451..31191 - 741 WP_001541566.1 carbonic anhydrase family protein -
PQQ02_RS24465 (PQQ02_24465) 31846..32334 - 489 WP_001135407.1 hypothetical protein -
PQQ02_RS24470 (PQQ02_24470) 32593..33708 + 1116 WP_001247118.1 DNA-binding protein -
PQQ02_RS24475 (PQQ02_24475) 33794..34210 + 417 WP_001541564.1 hypothetical protein -
PQQ02_RS24480 (PQQ02_24480) 34313..34729 + 417 WP_000988946.1 hypothetical protein -
PQQ02_RS24485 (PQQ02_24485) 34786..35387 + 602 Protein_46 DUF2913 family protein -
PQQ02_RS24490 (PQQ02_24490) 35384..36326 - 943 Protein_47 ISNCY family transposase ISSen7 VF
PQQ02_RS24495 (PQQ02_24495) 36719..37339 + 621 WP_000864788.1 ParA family protein -
PQQ02_RS24500 (PQQ02_24500) 37391..37621 + 231 WP_274891643.1 plasmid partition protein ParG -
PQQ02_RS24505 (PQQ02_24505) 38260..38613 - 354 WP_001675596.1 DNA distortion polypeptide 3 -
PQQ02_RS24510 (PQQ02_24510) 38750..39196 - 447 WP_001074381.1 hypothetical protein -
PQQ02_RS24515 (PQQ02_24515) 39236..40072 - 837 WP_001575533.1 replication initiation protein -
PQQ02_RS24520 (PQQ02_24520) 41308..41559 + 252 WP_000121743.1 plasmid stabilization protein Antitoxin Detail
PQQ02_RS24525 (PQQ02_24525) 41549..41830 + 282 WP_000220560.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
PQQ02_RS24530 (PQQ02_24530) 41976..42299 + 324 WP_001181909.1 hypothetical protein -
PQQ02_RS24535 (PQQ02_24535) 42344..42589 + 246 WP_000356542.1 hypothetical protein -
PQQ02_RS24540 (PQQ02_24540) 42579..42794 + 216 WP_001180117.1 hypothetical protein -
PQQ02_RS24545 (PQQ02_24545) 42887..43216 + 330 WP_000866650.1 hypothetical protein -
PQQ02_RS24550 (PQQ02_24550) 43259..43438 + 180 WP_001575529.1 hypothetical protein -
PQQ02_RS24555 (PQQ02_24555) 43508..43657 + 150 WP_000003880.1 hypothetical protein -
PQQ02_RS24560 (PQQ02_24560) 43670..43942 + 273 WP_000160399.1 hypothetical protein -
PQQ02_RS24565 (PQQ02_24565) 44268..44813 + 546 WP_000757691.1 DNA distortion polypeptide 1 -
PQQ02_RS24570 (PQQ02_24570) 44816..45997 + 1182 WP_000539536.1 hypothetical protein Relaxase
PQQ02_RS24575 (PQQ02_24575) 46343..46861 + 519 WP_001675951.1 transcription termination/antitermination NusG family protein -
PQQ02_RS24580 (PQQ02_24580) 46791..47003 + 213 WP_000125172.1 hypothetical protein -
PQQ02_RS24585 (PQQ02_24585) 47036..47683 + 648 WP_000953526.1 hypothetical protein VF
PQQ02_RS24590 (PQQ02_24590) 47661..47957 + 297 WP_000916182.1 TrbC/VirB2 family protein -
PQQ02_RS24595 (PQQ02_24595) 47976..50729 + 2754 WP_001675613.1 Type IV secretion system protein virB4 VF
PQQ02_RS24600 (PQQ02_24600) 50740..51498 + 759 WP_000744198.1 type IV secretion system protein -
PQQ02_RS24605 (PQQ02_24605) 51499..51726 + 228 WP_000835348.1 EexN family lipoprotein -
PQQ02_RS24610 (PQQ02_24610) 51736..52869 + 1134 WP_000513456.1 type IV secretion system protein -
PQQ02_RS24615 (PQQ02_24615) 52996..53124 + 129 WP_001328099.1 hypothetical protein -
PQQ02_RS24620 (PQQ02_24620) 53114..53827 + 714 WP_274891642.1 type IV secretion system protein -
PQQ02_RS24625 (PQQ02_24625) 53832..54761 + 930 WP_000783377.1 TrbG/VirB9 family P-type conjugative transfer protein -
PQQ02_RS24630 (PQQ02_24630) 54758..55963 + 1206 WP_000139139.1 hypothetical protein VF
PQQ02_RS24635 (PQQ02_24635) 55965..56995 + 1031 Protein_76 Type IV secretion system protein VirB11 VF
PQQ02_RS24640 (PQQ02_24640) 56998..58833 + 1836 WP_000053823.1 type IV secretory system conjugative DNA transfer family protein -
PQQ02_RS24645 (PQQ02_24645) 58830..59243 + 414 WP_001575522.1 cag pathogenicity island Cag12 family protein -
PQQ02_RS24650 (PQQ02_24650) 59240..59542 + 303 WP_015059377.1 TrbM/KikA/MpfK family conjugal transfer protein -
PQQ02_RS24655 (PQQ02_24655) 59655..59849 + 195 Protein_80 ATP-binding protein -
PQQ02_RS24660 (PQQ02_24660) 59853..60428 + 576 WP_001198970.1 hypothetical protein -
PQQ02_RS24665 (PQQ02_24665) 60433..62586 + 2154 WP_001235753.1 type IA DNA topoisomerase -
PQQ02_RS24670 (PQQ02_24670) 62583..62789 + 207 WP_000850859.1 hemolysin expression modulator Hha -
PQQ02_RS24675 (PQQ02_24675) 62805..63239 + 435 WP_001293135.1 H-NS family nucleoid-associated regulatory protein -
PQQ02_RS24680 (PQQ02_24680) 63902..64387 + 486 WP_001281416.1 Abi family protein -
PQQ02_RS24685 (PQQ02_24685) 64546..65673 - 1128 WP_000156234.1 hypothetical protein -
PQQ02_RS24690 (PQQ02_24690) 66499..66594 + 96 WP_000609147.1 DinQ-like type I toxin DqlB -
PQQ02_RS24695 (PQQ02_24695) 66751..67395 - 645 WP_000203397.1 Tn3 family transposase TnpR_TnEc1 Transposase
PQQ02_RS24700 (PQQ02_24700) 67469..71725 + 4257 Protein_89 Multifunctional conjugation protein TraI Relaxase
PQQ02_RS24705 (PQQ02_24705) 71745..72485 + 741 WP_000177628.1 conjugal transfer pilus acetylase TraX -
PQQ02_RS24710 (PQQ02_24710) 72540..73103 + 564 WP_000129019.1 fertility inhibition protein FinO -
PQQ02_RS24715 (PQQ02_24715) 73220..73501 + 282 Protein_92 disulfide bond formation protein DsbA -
PQQ02_RS24720 (PQQ02_24720) 73782..74349 + 568 Protein_93 phospholipase D family protein -
PQQ02_RS24725 (PQQ02_24725) 74460..74726 + 267 WP_001576653.1 replication regulatory protein RepA -
PQQ02_RS24730 (PQQ02_24730) 74974..75051 + 78 WP_001541552.1 RepA leader peptide Tap -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance