MGE detailed information
MGE type: Genomic_island MGE length: 11362 bp
Accession: NZ_CP117340 Location: 833476..844837 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: chromosome
Accession: NZ_CP117340 Location: 833476..844837 Organism: Salmonella enterica subsp. enterica serovar Dublin strain RM111 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ02_RS04000 (828922) | 828922..830020 | + | 1099 | WP_274891596.1 | peptide chain release factor 2 | - |
| PQQ02_RS04005 (830030) | 830030..831547 | + | 1518 | WP_000003339.1 | lysine--tRNA ligase | - |
| PQQ02_RS04010 (831623) | 831623..832168 | - | 546 | WP_000133994.1 | isopentenyl-diphosphate Delta-isomerase | - |
| PQQ02_RS04015 (832433) | 832433..833191 | + | 759 | WP_000244328.1 | amidase activator ActS | - |
| PQQ02_RS04025 (833476) | 833476..834282 | - | 807 | WP_001574939.1 | DUF1460 domain-containing protein | - |
| PQQ02_RS04030 (834562) | 834562..834813 | - | 252 | WP_001576352.1 | hypothetical protein | - |
| PQQ02_RS04035 (835022) | 835022..835249 | + | 228 | WP_000557549.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ02_RS04040 (835249) | 835249..835647 | + | 399 | WP_000911336.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PQQ02_RS04045 (836455) | 836455..836991 | + | 537 | WP_001038502.1 | Attachment invasion locus protein | VF |
| PQQ02_RS04050 (837038) | 837038..837670 | + | 633 | WP_000835265.1 | YfdX family protein | - |
| PQQ02_RS04055 (838389) | 838389..838970 | + | 582 | WP_001244651.1 | putative fimbrial-like protein YbgD | VF |
| PQQ02_RS04060 (839090) | 839090..841579 | + | 2490 | WP_000705504.1 | Outer membrane usher protein PapC | VF |
| PQQ02_RS04065 (841620) | 841620..842363 | + | 744 | WP_000798504.1 | Chaperone protein PapD | VF |
| PQQ02_RS04070 (842360) | 842360..843436 | + | 1077 | WP_000141331.1 | hypothetical protein | - |
| PQQ02_RS04075 (843580) | 843580..844092 | + | 513 | WP_000336258.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ02_RS04080 (844079) | 844079..844837 | + | 759 | WP_000134794.1 | transcriptional regulator | - |
| PQQ02_RS04085 (845047) | 845047..845937 | - | 891 | WP_001747399.1 | nickel/cobalt efflux protein RcnA | - |
| PQQ02_RS04090 (846058) | 846058..846330 | + | 273 | WP_000019953.1 | Ni(II)/Co(II)-binding transcriptional repressor RcnR | - |
| PQQ02_RS04095 (846361) | 846361..847590 | - | 1230 | WP_000036836.1 | amino acid permease | - |
| PQQ02_RS04100 (847732) | 847732..848187 | - | 456 | WP_001574932.1 | multidrug/biocide efflux PACE transporter | - |
| PQQ02_RS04105 (848291) | 848291..849154 | + | 864 | WP_001270781.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA297244 | UFRD01000002 | 4451871..4463194 | 0.008 |