Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 835022..835647 Replicon chromosome
Accession NZ_CP117340
Organism Salmonella enterica subsp. enterica serovar Dublin strain RM111

Toxin (Protein)


Gene name vapC Uniprot ID M7SD17
Locus tag PQQ02_RS04040 Protein ID WP_000911336.1
Coordinates 835249..835647 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID M7S3S8
Locus tag PQQ02_RS04035 Protein ID WP_000557549.1
Coordinates 835022..835249 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQQ02_RS04005 (830030) 830030..831547 + 1518 WP_000003339.1 lysine--tRNA ligase -
PQQ02_RS04010 (831623) 831623..832168 - 546 WP_000133994.1 isopentenyl-diphosphate Delta-isomerase -
PQQ02_RS04015 (832433) 832433..833191 + 759 WP_000244328.1 amidase activator ActS -
PQQ02_RS04025 (833476) 833476..834282 - 807 WP_001574939.1 DUF1460 domain-containing protein -
PQQ02_RS04030 (834562) 834562..834813 - 252 WP_001576352.1 hypothetical protein -
PQQ02_RS04035 (835022) 835022..835249 + 228 WP_000557549.1 toxin-antitoxin system antitoxin VapB Antitoxin
PQQ02_RS04040 (835249) 835249..835647 + 399 WP_000911336.1 tRNA(fMet)-specific endonuclease VapC Toxin
PQQ02_RS04045 (836455) 836455..836991 + 537 WP_001038502.1 STM3031 family outer membrane protein -
PQQ02_RS04050 (837038) 837038..837670 + 633 WP_000835265.1 YfdX family protein -
PQQ02_RS04055 (838389) 838389..838970 + 582 WP_001244651.1 fimbrial protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 833476..844837 11361


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14938.30 Da        Isoelectric Point: 7.2155

>T270630 WP_000911336.1 NZ_CP117340:835249-835647 [Salmonella enterica subsp. enterica serovar Dublin]
MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELIYGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHT
GQIRAELARKGTPVGPYDQMIAGHAGSRGLVVVTNNLREFERIPGIRIEDWC

Download         Length: 399 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8514.51 Da        Isoelectric Point: 5.0210

>AT270630 WP_000557549.1 NZ_CP117340:835022-835249 [Salmonella enterica subsp. enterica serovar Dublin]
MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVGESWDSWFDGEGASTDFMSTREQPAVQEREGF

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6IFC
PDB 6IFM

Antitoxin

Source ID Structure
PDB 6IFM
AlphaFold DB A0A3V2Y5V5

References