MGE detailed information
MGE type: Conjugative plasmid MGE length: 87713 bp
Accession: NZ_CP117318 Location: 1..87713 Organism: Salmonella enterica subsp. enterica serovar Derby strain RM002 Replicon: plasmid pRM002_1
Accession: NZ_CP117318 Location: 1..87713 Organism: Salmonella enterica subsp. enterica serovar Derby strain RM002 Replicon: plasmid pRM002_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ14_RS23465 (1) | 1..1032 | + | 1032 | WP_000907861.1 | plasmid replication initiator RepA | - |
| PQQ14_RS23470 (1940) | 1940..2224 | + | 285 | WP_001178089.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| PQQ14_RS23475 (2224) | 2224..2499 | + | 276 | WP_001582571.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PQQ14_RS23480 (2605) | 2605..2883 | + | 279 | WP_001105069.1 | hypothetical protein | - |
| PQQ14_RS23485 (3078) | 3078..3344 | - | 267 | WP_000627829.1 | hypothetical protein | - |
| PQQ14_RS23490 (3344) | 3344..3838 | - | 495 | WP_001582574.1 | hypothetical protein | - |
| PQQ14_RS23495 (3894) | 3894..4496 | - | 603 | WP_000517695.1 | ProQ/FINO family protein | - |
| PQQ14_RS23500 (4850) | 4850..6196 | + | 1347 | WP_001132032.1 | protein YagA | - |
| PQQ14_RS23505 (6475) | 6475..8355 | + | 1881 | WP_274881801.1 | colicin Ia central receptor-binding domain-containing protein | - |
| PQQ14_RS23510 (8377) | 8377..8712 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| PQQ14_RS23515 (8841) | 8841..9188 | + | 348 | WP_052896763.1 | DUF6404 family protein | - |
| PQQ14_RS23520 (9208) | 9208..9798 | - | 591 | WP_000194572.1 | hypothetical protein | - |
| PQQ14_RS23525 (9798) | 9798..10052 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| PQQ14_RS23530 (10585) | 10585..10998 | + | 414 | WP_274881804.1 | hypothetical protein | - |
| PQQ14_RS23535 (11000) | 11000..11779 | + | 780 | WP_052896764.1 | site-specific integrase | - |
| PQQ14_RS23540 (11959) | 11959..12603 | + | 645 | WP_001144036.1 | ParA family protein | - |
| PQQ14_RS23545 (12690) | 12690..12998 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| PQQ14_RS23550 (13412) | 13412..14392 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| PQQ14_RS23555 (14385) | 14385..14801 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| PQQ14_RS23560 (14803) | 14803..16077 | - | 1275 | WP_000457524.1 | Y-family DNA polymerase | - |
| PQQ14_RS23565 (16077) | 16077..16514 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PQQ14_RS23570 (16511) | 16511..16759 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PQQ14_RS23575 (17177) | 17177..18079 | + | 903 | WP_188079681.1 | DUF1281 domain-containing protein | - |
| PQQ14_RS23580 (18076) | 18076..18387 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| PQQ14_RS23585 (18463) | 18463..19146 | + | 684 | WP_000086148.1 | DNA methylase | - |
| PQQ14_RS23590 (19147) | 19147..19368 | + | 222 | WP_001104879.1 | hypothetical protein | - |
| PQQ14_RS23595 (19349) | 19349..19816 | + | 468 | WP_014640312.1 | DUF1380 family protein | - |
| PQQ14_RS23600 (19862) | 19862..20638 | + | 777 | WP_015058197.1 | hypothetical protein | - |
| PQQ14_RS23605 (21054) | 21054..21479 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| PQQ14_RS23610 (21526) | 21526..21948 | + | 423 | WP_052896767.1 | DUF1380 family protein | - |
| PQQ14_RS23615 (21945) | 21945..22136 | + | 192 | WP_052896769.1 | hypothetical protein | - |
| PQQ14_RS23620 (22207) | 22207..22521 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| PQQ14_RS23625 (22905) | 22905..23432 | + | 528 | WP_274881812.1 | single-stranded DNA-binding protein | - |
| PQQ14_RS23630 (23490) | 23490..23723 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| PQQ14_RS23635 (23782) | 23782..25740 | + | 1959 | WP_274881813.1 | ParB/RepB/Spo0J family partition protein | - |
| PQQ14_RS23640 (25795) | 25795..26229 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| PQQ14_RS23645 (26226) | 26226..26945 | + | 720 | WP_001276263.1 | plasmid SOS inhibition protein A | - |
| PQQ14_RS23650 (26942) | 26942..27538 | + | 597 | Protein_37 | hypothetical protein | - |
| PQQ14_RS23655 (28001) | 28001..28501 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| PQQ14_RS23660 (29230) | 29230..29664 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| PQQ14_RS23665 (29758) | 29758..30024 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| PQQ14_RS23670 (30089) | 30089..30979 | + | 891 | WP_274881818.1 | ISNCY family transposase ISSen7 | VF |
| PQQ14_RS23675 (31041) | 31041..31259 | + | 219 | WP_274881819.1 | hypothetical protein | VF |
| PQQ14_RS23680 (31290) | 31290..31541 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PQQ14_RS23685 (32121) | 32121..32969 | + | 849 | WP_052896777.1 | DUF4942 domain-containing protein | - |
| PQQ14_RS23690 (33055) | 33055..33390 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PQQ14_RS23695 (33624) | 33624..33956 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PQQ14_RS23700 (33967) | 33967..36663 | + | 2697 | WP_274881822.1 | hypothetical protein | Relaxase |
| PQQ14_RS23705 (36700) | 36700..38991 | - | 2292 | WP_274881823.1 | F-type conjugative transfer protein TrbC | - |
| PQQ14_RS23710 (38984) | 38984..40054 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| PQQ14_RS23715 (40073) | 40073..41281 | - | 1209 | WP_039005623.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (41461) | 41461..41518 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (41461) | 41461..41518 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (41461) | 41461..41518 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| - (41461) | 41461..41518 | - | 58 | NuclAT_0 | - | Antitoxin Detail |
| PQQ14_RS23720 (41573) | 41573..41725 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| PQQ14_RS23725 (41797) | 41797..42048 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| PQQ14_RS23730 (42549) | 42549..42644 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PQQ14_RS23735 (42709) | 42709..42885 | - | 177 | WP_001054904.1 | hypothetical protein | - |
| PQQ14_RS23740 (43277) | 43277..43486 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| PQQ14_RS23745 (43558) | 43558..44220 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PQQ14_RS23750 (44291) | 44291..46459 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| PQQ14_RS23755 (46556) | 46556..47140 | - | 585 | WP_052896781.1 | IncI1-type conjugal transfer protein TraX | - |
| PQQ14_RS23760 (47169) | 47169..48371 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| PQQ14_RS23765 (48338) | 48338..48952 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| PQQ14_RS23770 (48952) | 48952..51996 | - | 3045 | WP_001024780.1 | IncI1-type conjugal transfer protein TraU | - |
| PQQ14_RS23775 (52086) | 52086..52886 | - | 801 | WP_274881765.1 | IncI1-type conjugal transfer protein TraT | - |
| PQQ14_RS23780 (52870) | 52870..53058 | - | 189 | WP_052896789.1 | putative conjugal transfer protein TraS | - |
| PQQ14_RS23785 (53122) | 53122..53526 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| PQQ14_RS23790 (53577) | 53577..54104 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PQQ14_RS23795 (54104) | 54104..54808 | - | 705 | WP_274881768.1 | IncI1-type conjugal transfer protein TraP | - |
| PQQ14_RS23800 (54808) | 54808..56097 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| PQQ14_RS23805 (56100) | 56100..57083 | - | 984 | WP_001191879.1 | hypothetical protein | VF |
| PQQ14_RS23810 (57094) | 57094..57786 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| PQQ14_RS23815 (57783) | 57783..58130 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PQQ14_RS23820 (58148) | 58148..61915 | - | 3768 | WP_052896792.1 | DUF5710 domain-containing protein | - |
| PQQ14_RS23825 (62005) | 62005..62556 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| PQQ14_RS23830 (62571) | 62571..62861 | - | 291 | WP_072107178.1 | conjugal transfer protein | - |
| PQQ14_RS23835 (62858) | 62858..64006 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| PQQ14_RS23840 (64003) | 64003..64821 | - | 819 | WP_000866663.1 | hypothetical protein | VF |
| PQQ14_RS23845 (64818) | 64818..65276 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PQQ14_RS23850 (65671) | 65671..66255 | - | 585 | WP_016231299.1 | histidine phosphatase family protein | - |
| PQQ14_RS23855 (66315) | 66315..67517 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PQQ14_RS23860 (67602) | 67602..68426 | - | 825 | WP_001582597.1 | conjugal transfer protein TraE | - |
| PQQ14_RS23865 (68577) | 68577..69731 | - | 1155 | WP_001139958.1 | site-specific integrase | - |
| PQQ14_RS23870 (72321) | 72321..73457 | - | 1137 | WP_274881789.1 | hypothetical protein | VF |
| PQQ14_RS23875 (73457) | 73457..74113 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| PQQ14_RS23880 (74098) | 74098..74658 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| PQQ14_RS23885 (74668) | 74668..75282 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| PQQ14_RS23890 (75299) | 75299..76384 | - | 1086 | WP_274881791.1 | hypothetical protein | VF |
| PQQ14_RS23895 (76397) | 76397..77950 | - | 1554 | WP_274881792.1 | hypothetical protein | VF |
| PQQ14_RS23900 (77961) | 77961..78413 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| PQQ14_RS23905 (78400) | 78400..79695 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| PQQ14_RS23910 (79688) | 79688..81370 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PQQ14_RS23915 (81384) | 81384..81821 | - | 438 | WP_274881793.1 | hypothetical protein | VF |
| PQQ14_RS23920 (81821) | 81821..82888 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| PQQ14_RS23925 (83935) | 83935..84189 | - | 255 | WP_274881796.1 | PilI type IV pilus biogenesis protein | - |
| PQQ14_RS23930 (84361) | 84361..85044 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| PQQ14_RS23935 (85298) | 85298..85831 | - | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| PQQ14_RS23940 (86273) | 86273..86560 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| PQQ14_RS23945 (86598) | 86598..86756 | - | 159 | Protein_96 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|