MGE detailed information
MGE type: Conjugative plasmid MGE length: 93832 bp
Accession: NZ_CP117245 Location: 1..93832 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: plasmid pATCC14028_1
Accession: NZ_CP117245 Location: 1..93832 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Replicon: plasmid pATCC14028_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ30_RS23680 (PQQ30_23680) | 1..882 | + | 882 | WP_001738692.1 | incFII family plasmid replication initiator RepA | - |
| PQQ30_RS23685 (PQQ30_23685) | 1769..1963 | + | 195 | Protein_1 | SdiA-regulated domain-containing protein | - |
| PQQ30_RS23690 (PQQ30_23690) | 2060..2818 | - | 759 | WP_000417898.1 | AraC family transcriptional regulator | - |
| PQQ30_RS23695 (PQQ30_23695) | 3085..3642 | - | 558 | WP_000725062.1 | Attachment invasion locus protein | VF |
| PQQ30_RS23700 (PQQ30_23700) | 3732..4631 | - | 900 | WP_010999938.1 | YjiK family protein | - |
| PQQ30_RS23705 (PQQ30_23705) | 4628..4774 | - | 147 | WP_001192557.1 | hypothetical protein | - |
| PQQ30_RS23710 (PQQ30_23710) | 4764..5417 | - | 654 | WP_000178592.1 | DsbA family protein | - |
| PQQ30_RS23715 (PQQ30_23715) | 5662..6012 | - | 351 | WP_001526811.1 | Transcriptional regulatory protein RcsB | VF |
| PQQ30_RS23720 (PQQ30_23720) | 5997..6209 | - | 213 | WP_000004313.1 | hypothetical protein | VF |
| PQQ30_RS23725 (PQQ30_23725) | 6641..7516 | - | 876 | WP_014343944.1 | hypothetical protein | - |
| PQQ30_RS23730 (PQQ30_23730) | 7769..8326 | - | 558 | WP_010999940.1 | membrane protein | - |
| PQQ30_RS23735 (PQQ30_23735) | 8341..9033 | - | 693 | WP_001038510.1 | Chaperone protein FaeE | VF |
| PQQ30_RS23740 (PQQ30_23740) | 9026..11434 | - | 2409 | WP_000007893.1 | Outer membrane usher protein FimD | VF |
| PQQ30_RS23745 (PQQ30_23745) | 11662..12180 | - | 519 | WP_000748205.1 | hypothetical protein | VF |
| PQQ30_RS23750 (PQQ30_23750) | 12455..12757 | - | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| PQQ30_RS23755 (PQQ30_23755) | 13476..13857 | + | 382 | Protein_15 | YgiW/YdeI family stress tolerance OB fold protein | - |
| PQQ30_RS23760 (PQQ30_23760) | 14026..14470 | + | 445 | Protein_16 | tyrosine-type recombinase/integrase | - |
| PQQ30_RS23765 (PQQ30_23765) | 14729..15718 | - | 990 | WP_001527061.1 | RepB family plasmid replication initiator protein | - |
| PQQ30_RS23770 (PQQ30_23770) | 16212..16508 | - | 297 | WP_001687482.1 | hypothetical protein | - |
| PQQ30_RS23775 (PQQ30_23775) | 16520..16948 | + | 429 | Protein_19 | hypothetical protein | - |
| PQQ30_RS23780 (PQQ30_23780) | 16992..17513 | - | 522 | WP_010999942.1 | hypothetical protein | - |
| PQQ30_RS23785 (PQQ30_23785) | 18189..18407 | + | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PQQ30_RS23790 (PQQ30_23790) | 18409..18714 | + | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PQQ30_RS23795 (PQQ30_23795) | 18716..19006 | + | 291 | WP_001266176.1 | hypothetical protein | - |
| PQQ30_RS23800 (PQQ30_23800) | 19003..19524 | + | 522 | WP_000198608.1 | hypothetical protein | - |
| PQQ30_RS23805 (PQQ30_23805) | 19559..20341 | + | 783 | WP_000082169.1 | site-specific integrase | - |
| PQQ30_RS23810 (PQQ30_23810) | 20350..20901 | + | 552 | WP_000545754.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| PQQ30_RS23815 (PQQ30_23815) | 21088..21576 | + | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| PQQ30_RS23820 (PQQ30_23820) | 21570..22055 | + | 486 | WP_000905606.1 | membrane protein | - |
| PQQ30_RS23825 (PQQ30_23825) | 22332..22619 | - | 288 | WP_071530243.1 | hypothetical protein | - |
| PQQ30_RS23830 (PQQ30_23830) | 22775..23335 | + | 561 | WP_000900095.1 | Invasin | VF |
| PQQ30_RS23835 (PQQ30_23835) | 23402..23752 | - | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| PQQ30_RS23840 (PQQ30_23840) | 23809..24233 | + | 425 | Protein_32 | IS200/IS605 family transposase | - |
| PQQ30_RS23845 (PQQ30_23845) | 24360..25010 | - | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| PQQ30_RS23850 (PQQ30_23850) | 25271..25996 | - | 726 | WP_001122242.1 | MAPK phosphothreonine lyase | VF |
| PQQ30_RS23855 (PQQ30_23855) | 26277..28052 | - | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| PQQ30_RS23860 (PQQ30_23860) | 28104..28271 | - | 168 | WP_001526987.1 | hypothetical protein | - |
| PQQ30_RS23865 (PQQ30_23865) | 28234..29001 | - | 768 | WP_001526990.1 | virulence protein SpvA | - |
| PQQ30_RS23870 (PQQ30_23870) | 29175..29339 | - | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| PQQ30_RS23875 (PQQ30_23875) | 29513..30406 | - | 894 | WP_000346691.1 | virulence genes transcriptional activator SpvR | - |
| PQQ30_RS23880 (PQQ30_23880) | 31015..32052 | + | 1038 | WP_001121399.1 | IS630 family transposase ISEc33 | Transposase |
| PQQ30_RS23885 (PQQ30_23885) | 32241..33266 | - | 1026 | WP_001576625.1 | ExeA family protein | - |
| PQQ30_RS23890 (PQQ30_23890) | 33199..34863 | - | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| PQQ30_RS23895 (PQQ30_23895) | 34847..35407 | - | 561 | WP_001240331.1 | Tn3 family transposase ISPsy42 | Transposase |
| PQQ30_RS23900 (PQQ30_23900) | 35614..36354 | - | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| PQQ30_RS23905 (PQQ30_23905) | 37009..37497 | - | 489 | WP_001135407.1 | hypothetical protein | - |
| PQQ30_RS23910 (PQQ30_23910) | 37756..38871 | + | 1116 | WP_001247118.1 | DNA-binding protein | - |
| PQQ30_RS23915 (PQQ30_23915) | 38957..39373 | + | 417 | WP_001541564.1 | hypothetical protein | - |
| PQQ30_RS23920 (PQQ30_23920) | 39476..39892 | + | 417 | WP_000988946.1 | hypothetical protein | - |
| PQQ30_RS23925 (PQQ30_23925) | 39949..40550 | + | 602 | Protein_49 | DUF2913 family protein | - |
| PQQ30_RS23930 (PQQ30_23930) | 40547..41488 | - | 942 | WP_000728917.1 | ISNCY family transposase ISSen7 | VF |
| PQQ30_RS23935 (PQQ30_23935) | 41903..43108 | + | 1206 | WP_000427676.1 | AAA family ATPase | - |
| PQQ30_RS23940 (PQQ30_23940) | 43108..44082 | + | 975 | WP_000064274.1 | ParB family protein | - |
| PQQ30_RS23945 (PQQ30_23945) | 44164..45438 | - | 1275 | WP_000457541.1 | Y-family DNA polymerase | - |
| PQQ30_RS23950 (PQQ30_23950) | 45438..45860 | - | 423 | WP_000925627.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PQQ30_RS23955 (PQQ30_23955) | 46371..46841 | + | 471 | WP_000490265.1 | hypothetical protein | - |
| PQQ30_RS23960 (PQQ30_23960) | 46834..47190 | + | 357 | WP_000369839.1 | hypothetical protein | - |
| PQQ30_RS23965 (PQQ30_23965) | 47128..47409 | - | 282 | WP_146671468.1 | hypothetical protein | - |
| PQQ30_RS23970 (PQQ30_23970) | 47572..48252 | + | 681 | WP_000088645.1 | DNA methylase | - |
| PQQ30_RS23975 (PQQ30_23975) | 48252..48473 | + | 222 | WP_001109588.1 | hypothetical protein | - |
| PQQ30_RS23980 (PQQ30_23980) | 48529..48942 | + | 414 | WP_000990114.1 | DUF1380 family protein | - |
| PQQ30_RS23985 (PQQ30_23985) | 49014..49778 | + | 765 | WP_001246548.1 | membrane protein | - |
| PQQ30_RS23990 (PQQ30_23990) | 50274..50708 | + | 435 | WP_001200150.1 | antirestriction protein | - |
| PQQ30_RS23995 (PQQ30_23995) | 50775..51209 | + | 435 | WP_000274533.1 | DUF1380 family protein | - |
| PQQ30_RS24000 (PQQ30_24000) | 51445..51768 | + | 324 | WP_000015983.1 | DNA polymerase III subunit theta | - |
| PQQ30_RS24005 (PQQ30_24005) | 52469..52987 | + | 519 | WP_000741240.1 | single-stranded DNA-binding protein SSB2 | - |
| PQQ30_RS24010 (PQQ30_24010) | 53042..53284 | + | 243 | WP_000131520.1 | DUF905 domain-containing protein | - |
| PQQ30_RS24015 (PQQ30_24015) | 53353..55350 | + | 1998 | WP_000117513.1 | ParB/RepB/Spo0J family partition protein | - |
| PQQ30_RS24020 (PQQ30_24020) | 55390..55824 | + | 435 | WP_010999943.1 | conjugation system SOS inhibitor PsiB | - |
| PQQ30_RS24025 (PQQ30_24025) | 55821..56558 | + | 738 | WP_000581933.1 | plasmid SOS inhibition protein A | - |
| PQQ30_RS24030 (PQQ30_24030) | 56593..56721 | + | 129 | WP_000372429.1 | hypothetical protein | - |
| PQQ30_RS24035 (PQQ30_24035) | 56807..56965 | + | 159 | WP_001704449.1 | hypothetical protein | - |
| PQQ30_RS24040 (PQQ30_24040) | 57068..57886 | + | 819 | Protein_72 | DUF932 domain-containing protein | - |
| PQQ30_RS24045 (PQQ30_24045) | 58197..58667 | - | 471 | WP_001526856.1 | hypothetical protein | VF |
| PQQ30_RS24050 (PQQ30_24050) | 59082..59462 | + | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PQQ30_RS24055 (PQQ30_24055) | 59655..60341 | + | 687 | WP_000336297.1 | PAS domain-containing protein | - |
| PQQ30_RS24060 (PQQ30_24060) | 60435..60662 | + | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| PQQ30_RS24065 (PQQ30_24065) | 60704..61066 | + | 363 | WP_001274201.1 | type IV conjugative transfer system pilin TraA | - |
| PQQ30_RS24070 (PQQ30_24070) | 61081..61392 | + | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| PQQ30_RS24075 (PQQ30_24075) | 61414..61980 | + | 567 | WP_000399768.1 | type IV conjugative transfer system protein TraE | - |
| PQQ30_RS24080 (PQQ30_24080) | 61967..62707 | + | 741 | WP_001230719.1 | type-F conjugative transfer system secretin TraK | - |
| PQQ30_RS24085 (PQQ30_24085) | 62707..64128 | + | 1422 | WP_000146700.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PQQ30_RS24090 (PQQ30_24090) | 64118..64714 | + | 597 | WP_000527896.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PQQ30_RS24095 (PQQ30_24095) | 64692..64937 | + | 246 | WP_010999944.1 | DUF2689 domain-containing protein | - |
| PQQ30_RS24100 (PQQ30_24100) | 64934..65449 | + | 516 | WP_001079995.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PQQ30_RS24105 (PQQ30_24105) | 65584..65805 | + | 222 | WP_001278699.1 | conjugal transfer protein TraR | - |
| PQQ30_RS24110 (PQQ30_24110) | 65798..66265 | + | 468 | WP_000549562.1 | hypothetical protein | - |
| PQQ30_RS24115 (PQQ30_24115) | 66382..66645 | + | 264 | WP_001239255.1 | hypothetical protein | - |
| PQQ30_RS24120 (PQQ30_24120) | 66661..69309 | + | 2649 | WP_000793310.1 | type IV secretion system protein TraC | - |
| PQQ30_RS24125 (PQQ30_24125) | 69284..69670 | + | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| PQQ30_RS24130 (PQQ30_24130) | 69667..70299 | + | 633 | WP_000871995.1 | type-F conjugative transfer system protein TraW | - |
| PQQ30_RS24135 (PQQ30_24135) | 70296..71288 | + | 993 | WP_000833320.1 | conjugal transfer pilus assembly protein TraU | - |
| PQQ30_RS24140 (PQQ30_24140) | 71307..71615 | + | 309 | WP_010999945.1 | hypothetical protein | - |
| PQQ30_RS24145 (PQQ30_24145) | 71600..72238 | + | 639 | WP_000554823.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PQQ30_RS24150 (PQQ30_24150) | 72275..72694 | + | 420 | WP_001229397.1 | HNH endonuclease signature motif containing protein | - |
| PQQ30_RS24155 (PQQ30_24155) | 72691..74517 | + | 1827 | WP_000827528.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PQQ30_RS24160 (PQQ30_24160) | 74528..74743 | + | 216 | WP_000700023.1 | conjugal transfer protein TrbE | - |
| PQQ30_RS24165 (PQQ30_24165) | 74755..75504 | + | 750 | WP_001226854.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PQQ30_RS24170 (PQQ30_24170) | 75718..76011 | + | 294 | WP_001233881.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PQQ30_RS24175 (PQQ30_24175) | 75998..76546 | + | 549 | WP_000055840.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PQQ30_RS24180 (PQQ30_24180) | 76536..77918 | + | 1383 | WP_001161719.1 | conjugal transfer pilus assembly protein TraH | - |
| PQQ30_RS24185 (PQQ30_24185) | 77915..80737 | + | 2823 | WP_001007086.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PQQ30_RS24190 (PQQ30_24190) | 80753..81247 | + | 495 | WP_010999946.1 | entry exclusion protein | - |
| PQQ30_RS24195 (PQQ30_24195) | 81283..82014 | + | 732 | WP_000782438.1 | conjugal transfer complement resistance protein TraT | - |
| PQQ30_RS24200 (PQQ30_24200) | 82391..84553 | + | 2163 | WP_000009318.1 | type IV conjugative transfer system coupling protein TraD | - |
| PQQ30_RS24205 (PQQ30_24205) | 84562..84960 | - | 399 | WP_000911322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PQQ30_RS24210 (PQQ30_24210) | 84960..85187 | - | 228 | WP_000450265.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PQQ30_RS24215 (PQQ30_24215) | 85269..90527 | + | 5259 | WP_000986921.1 | Multifunctional conjugation protein TraI | Relaxase |
| PQQ30_RS24220 (PQQ30_24220) | 90547..91287 | + | 741 | WP_000177629.1 | conjugal transfer pilus acetylase TraX | - |
| PQQ30_RS24225 (PQQ30_24225) | 91342..91905 | + | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| PQQ30_RS24230 (PQQ30_24230) | 92020..92304 | + | 285 | WP_000477658.1 | hypothetical protein | - |
| PQQ30_RS24235 (PQQ30_24235) | 92356..92472 | + | 117 | WP_001526822.1 | hypothetical protein | - |
| PQQ30_RS24240 (PQQ30_24240) | 92582..93148 | + | 567 | Protein_112 | phospholipase D family protein | - |
| PQQ30_RS24245 (PQQ30_24245) | 93259..93525 | + | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|